LOC122362504 (LOC107742935,LOC107564259,LOC107702176)


Basic Information

Item Value
gene id LOC122362504
gene name LOC107742935,LOC107564259,LOC107702176
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 5533775 ~ 5537144 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043263977.1
ATGCTGATGCTTCTGCTGCTTTTGATGGTCCTGAAAACCCAGGCAGAAAAGCCTGACTGCACACCACAGGGGCACAGGGTGCTGCCTGAGATGGAGAAAGATGGAGACCTGATAATCGGGGGTGTATTTTCCTTCCGCACCGGACAAAATGGCTACACAGATTCCTTTACAAAACTGCCGGAAATACGTCCATGCAAAGATTTCAGTTTCAGGGAATTCAAGTTTGCTCACACGTTGATGTTTGCAATAGATGAAATAAACAGGCGCACAGACATTCTCCCCGGAATTAAACTGGGCTACAAAATTTACAATGACTGTGGGTCCACAGATATACTAAGAGCTGTGATGGCATTAGTAAATGGCCTAGATCGGTCAGAAACAGGAGCAAACTGCACTAAACCTCGAACAGTCCAAGCCATCATTGGACATTCTGGCTCAACACCAACCATGAGCTTTGCGAAGATTGTTGGACGATTCCATATACCAGTGATTAGTCACTTTGCAACATGTGCTTGTTTGAGCAACAGAAAGGAGTACCCCTCCTTTTTCCGAACTATTCCCAGCGATTACTATCAAAGCAGAGCACTGGCCCAGCTGGTCAGACATTTTGGCTGGATGTGGGTGGGGGCATtaagcaataaaaatgattatggaATAAATGGAATAACTACATTTATCAAGGCTGCTAATGAGGAAGGAGTGTGTATTGAATACTCAGAGGCCTTCGAAAGTACCGGTCCATACCAGGAAATAATTAGAATTGTTAATGTTATCAGAACCTCCACATCTAAGGTAATAATGGCTTTCATGTCACACAGAGAGATTAAGATACTGGTGGATGAGATATACAGGCAGAACATTACAGGACTGCAGTGGATCGGAAGTGATGCCTGGATCACAGATGACTCTCTAGCAGATATCAGCGGTCATACTTTGCTCATTGGATCCATCGGATTCACTGTCCGCAATGCTCAAATACCCGGACTAGATCTTTTTCTACATGAAGTGAATCCCTCTCAATTTCCTAACAGCATATTTCTCAAAGACTTTTGGGAGTATGTCTTTGACTGTTCTTTGAACCCGagtgaaaaaagaaatacatgcaATGGCTCTGAGAACTTGAGGGATGTGCAAAACTCTTTCACCGACTTGACTGACTTAAGGTTCTcgaacaatatatataaagctgTTTATGCAGTAGCTCACGCAATTAATAATCTCCTTTCGtgtgaacaaaacaaaagcttcaATTCTAATTCCACCTGTCTAAAACTTGTTGAAATAAAGGCTTGGCAGGTCTTAAATTCCTTGCAGTCGATAAATTTCACCACACCTGGgggtgaaaatgtattttttgataaCAACGGAGACTCACCAGCAAGATATGAGCTGATCAATCTACAAAGTGTTAATAGAGGCAAAATGAAGGTGGAAACTATTGGCTATTACGATGCCTCTTTGCCTAAAGGTCAGCACTTCTCTATGAATAACGTTCAGGTAGTCTGGAGAGAAGGAAGGCATCTGGTGCCTGTGTCCGTGTGCAGTGAGAGCTGTCCCCCGGGCACAAGGAAAGCTGTACAGAAAGGAAAACCTGTCTGCTGTTATGACTGTATTCCATGCCCTCCAGGAGAGATTAGTAACAGCACAGATTCTATTAATTGCCTCAAATGCCCTGTTGCTCAGTGGTCAAATACAAGAGGAGATGCCTGCATCCCAAAAGAAATTGAATTCTTCTCCTACGATGAAATAATGGGGATACTTTTGGCATTATTTTCTTTAGTTGGGGTCTTTTTCACATTATTAATCATGCTCATTTTCTACATGTACAGAAACACACCTATAGTTAGAGCCAACAACTCAGAGCTGAGCTTCCTGTTGCTTTTCTCACTGACTCTGTGTTTCCTCTGTTCTCTTACTTTCATTGGTCAACCCACTGAGTGGTCCTGTATGTTACGTCACACAGCATTTGGGATCACTTTTGTTCTCTGTATCTCATGTGTTTTGGGGAAAACTATTGTAGTGTTAATGGCCTTCAAGGCTACACTTCCAGGAAGTAAtgtcatgaaatggtttggCCCTGTACAACAACGACTCTGTGTTCTTACCTTTGCACTTATACAGGTGCTTATATGTGCAATTTGGTTAATATTATCTCCACCATTTCCATTTATGAACATGGTTCTTTATCAGGAAAAAATAATTCTAGAATGTAGCTTAGGTTCAGCTATTGGTTTCTGGACTGTTCTAGGTTATATTGGTCTCCTGGCTgtcctttgctttgttttagcTTTTCTTGCTCGTAAGCTGCCAGACAACTTCAATGAAGCTAAGTTCATCACATTCAGTATGCTCATATTCTGTGCTGTATGGATCACATTTATACCAGCTTATGTCAGTTCTCCTGGAAAATTTATTGTTGCTGTGgaaatatttgccattttggGATCTAGCTTTGGTTTGCTGTTCTGCATTTTCCTGCCAAAATGCTATGTAATCTTACTGAGACctgaaatgaacactaaaaAGCATGTTACGGCGAAGCTGTCAAATGATAGCCATTAG

Function

NR:

description
PREDICTED: extracellular calcium-sensing receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043263977.1 True 2562 mRNA 0.41 6 5533775 5537144

Neighbor

gene id symbol gene type direction distance location
LOC122362505 LOC107564267,LOC107702191,LOC107742931,LOC793043 coding upstream 2258 5528283 ~ 5531517 (+)
LOC122363164 LOC107748627,LOC107557162,LOC107671076,LOC107702192,LOC107742943,LOC107564270,LOC107742944,LOC107702193,LOC107564269,LOC107557163 coding upstream 26912 5503770 ~ 5506863 (+)
LOC122322930 LOC107742941,LOC107564271,LOC107557161,LOC107748628,LOC107557163,LOC107702193,LOC107742944,LOC107748627 coding upstream 57222 5473233 ~ 5476553 (+)
LOC122322890 LOC107748625,LOC107557160,LOC107748628,LOC107557163,LOC107702193,LOC107742944,LOC107557161,LOC107564269,LOC107671077 coding upstream 72541 5457833 ~ 5461234 (+)
LOC122363145 LOC107702194,LOC107564272,LOC107742940,LOC107748628,LOC107557162,LOC107557161,LOC107702193,LOC107748627,LOC107742944,LOC107671077 coding upstream 80036 5450373 ~ 5453739 (+)
LOC122362507 LOC107557173,LOC107741611 coding downstream 1691 5538835 ~ 5541886 (+)
LOC122322911 NA coding downstream 5785 5542929 ~ 5546422 (+)
LOC122322998 si:ch73-125k17.2,LOC107564266,LOC107695204,LOC107742945 coding downstream 20307 5557451 ~ 5560911 (+)
LOC122323002 si:ch211-229c8.4,v2rc1,v2rc2,LOC107742946,LOC107695205,LOC107568358,LOC107732718 coding downstream 30030 5567174 ~ 5572169 (+)
LOC122323192 LOC107557164,LOC107707879,LOC107730034,LOC107695200,LOC107671059 coding downstream 47460 5584604 ~ 5588006 (+)
G124595 NA non-coding upstream 178795 5354713 ~ 5354980 (+)
G124544 NA non-coding upstream 350238 5011405 ~ 5183537 (+)
G124547 NA non-coding upstream 475937 5056750 ~ 5057838 (+)
G124533 NA non-coding upstream 625606 4903768 ~ 4908169 (+)
G124506 NA non-coding upstream 777156 4756230 ~ 4756619 (+)
G124622 v2rx1,LOC107703364,LOC107568274,LOC107716020 non-coding downstream 122762 5659906 ~ 5660233 (+)
G124672 NA non-coding downstream 484097 6021241 ~ 6021636 (+)
G124673 NA non-coding downstream 486515 6023659 ~ 6023991 (+)
G124703 NA non-coding downstream 690337 6227481 ~ 6230584 (+)
LOC122362614 NA non-coding downstream 753378 6290522 ~ 6290901 (+)
LOC122363125 LOC107702192,LOC107742943,LOC107564270,LOC107557162,LOC107702193,LOC107742944,LOC107748627,LOC107671076,LOC107748628,LOC107564269,LOC107702194,LOC107671077,LOC107557163 other upstream 37982 5492237 ~ 5495793 (+)
G124598 NA other upstream 138463 5394895 ~ 5395312 (+)
G124580 NA other upstream 303829 5228563 ~ 5229946 (+)
G124577 NA other upstream 307718 5225808 ~ 5226057 (+)
G124553 NA other upstream 393104 5139490 ~ 5140671 (+)
LOC122323196 v2ra17,v2ra16,LOC107695207,LOC107568277,LOC107716837,LOC107695208,LOC107568268,LOC107568349 other downstream 82326 5619470 ~ 5624977 (+)
G124612 v2ra17,LOC107568349,LOC107568268,LOC107703349,LOC107695207,LOC107722082,LOC105904790,LOC107695201 other downstream 86309 5623453 ~ 5629653 (+)
G124661 NA other downstream 439066 5976210 ~ 5979282 (+)
LOC122362599 LOC107557170,LOC107748085,LOC107741383,LOC107569151,LOC107741381,LOC107697634,LOC107697635,LOC107568278,LOC107712093,LOC107671063,LOC107569152 other downstream 483405 6020549 ~ 6029121 (+)
G124707 NA other downstream 754347 6291491 ~ 6291925 (+)

Expression


Co-expression Network