LOC122362670 (LOC107691836,LOC107758058,LOC107578181,LOC107572720,LOC107670622,LOC107714531)


Basic Information

Item Value
gene id LOC122362670
gene name LOC107691836,LOC107758058,LOC107578181,LOC107572720,LOC107670622,LOC107714531
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 12592067 ~ 12595389 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264215.1
GTGCTTGACTGATTGATGGTGATGTTTGTGATTTAAAGCAGTCTGACATTAATTTGGATGCCTACAAAcgtaccttttttttattattattgttacttatTTCATAGGAGTTGAAGAGGTTTGGTGTGCACAAAGTAGGAATCGGTTGATAGAGACACCTGTAGGGTTCAGAGATAGTTAATTAATTGCCTTAAGTAGTTAAATGACTCTTACTTATCAATTAGACTGATGTGTATTTACACAATGAACTGACTTTGGGTTTTAACTTCACATGACAAGCTATTGGAaaattaatagtattttatagtTTGATCGTACCTAAAAGCTACATTATTAGCAGAAATCAAGATTGTTTTTTCCTAGATGGTAAACTGGAGACACTCCAACAAGCTTCAAGCTCTCCTAAAGTGTTCGTGGTTGTagcagtaattttttttttacagctaggttttaataataaaaaaataataaaaaaaaaaacaggtgcaTTGCTTGTCGGTGCTAAACTTGCAGTGTTGTAGGTGGTTATTGAGGTTTATATGTTGAAGTGCAACATATAAGGTACAGCTAAGACTCAAATATGAGTAATAGTGAAAGTAATACTTGCCTCAGATACCTATAGCCTACTTATCAGATGTTATGTAGAGTCcagatttataatatttatttaataatttgaattggGAACCATACACATCCCACTTTTTCAGATGTCAAtgctatattaaaaataaccaacATAGCGTTAACTTCCATATTTATTAACTTcccatatttattttgtaattttttatttaataattttagaagACGTCTGGATAATGATGAagttacaaaacaaatatgtgaATTATGGATCGGACAACGTGCAATAATGTTTCACACACacgataaaaataataataataaaataaaactaaaactaatataatttaGTTGTAAATTAATTCTAGGTTTCTGTAACCAAGCCTGACTGCCGAGAAATCAGAGGTGCTAAGATTTTGTCAGCCAGGTGTTAAACTACTGCAGCCTcgaaaacaaagaaacaaagaccAGCTCTATTAAGATCAAGAGTTTAATGCAAATGTTCAAATTAGCGGTTTATAAATCTGAACTGCAGGAGGGgaatgtttttgttctgtaaagGAAATGCGTGGGTTTCTctcattgtttttgtaaagaattCAAATATGGTAAGTGCGTGTCCTTGAGgaggtatattttaaaaaaggcgTGTCTTGAGATTTCAGTCTTGAGCGTAAATTATGGGTTGGTTGTTCAGAGGGGTTTTATCATTGAGACACTGCATTCCTTTTAGCCCGGAGTGGAGGGCATAATACTTCTAAGACAATAGCATCGTTATCAACACAAATATGAGTGATTTATCAGAAAACTTCGTTATTGAAGATTTTTCAGGTTACGATTTTGAAGACTTGAAGAATGTAACAGACGGGCCTACCAATGAAATAACGTACACCTGCAAAAATGACAGTAGCCAACTGCATCTGTTTCACACCGTGTTTCAGCCTCTTGTATACGGTGTGGTTTTTCTGGTTGGCCTAACAGGAAATGGTCTACTCTTGACCGTTCTGCTTAAACGGCGGAGGAACCTGCGCATCACAGAAATCTACCTGCTACATCTGGCACTGGCTGATCTGCTCCTGCTCTTCACCTTACCGTTTGCGGTTACCGAAGGGGTAGCCGGATGGTTTTTCGGAAACTTCCTGTGCAAGATTTTGGGCCTTCTGAATCGCCTAAATCTGGTGTGTGGGAGTCTGCTTTTGGCATGCATCGGCTTCGATCGCTACCTCGCCATCGTGCACGCTATCCCCAGTCTCCAAACCCGTCGGCCTAAGACCGTTCACCTCACCTGTGCAGTGCTCTGGCtcctgtgtttatttgtgaCCATTCCAAACACGGTGTTCCTGTCTgtggagaaagagaagaacaaCACTTCCAGATTATTATGTTCCTATAACATCCATGCCATCCATGCGAACAACTGGATGCTGACCAGTCGCTTCATCACACACCTGCTATGCTTCTTCCTGCCTCTGGCGATTATGGGGTACTGCTACACTTCTGTAATCATCACCCTTTGCCAAAGCCAGAGGAGTCTGGAGAAACAGGGAGCAATTCGACTGGCCCTACTGGTTACACTGGTTTTCTGCCTGTGCTGGTTACCGTATAACATCACCATTTTTATGGATACCCTGGTGGTGTTTGGTGCTGTGTCGGAGGAGAACTGTCATGCTCGTGACACACTGAAACAAGTGATAATAGTCACAGAGAGCATTGGCTTTTCCCATTGTTGTCTGAATCCAATCTTGTATGCCTTCATTGGGGTTCGTTTCCGAAGAGACCTCATGCAGTTGCTCGCAAAGATAAAGTGTCTGCGTGTATGCCTGTCAGGTGGGCGCACAAAGACTTTTCACAGGGTATCGGTCTCAGAGGCTGTTACTACTACAACAAGTAACCAATACATCTAATAGCAGCTAGacatttttgtacatattttttgtttttcatctttatttcgcTAACGATCTGTGATTTACAGCTTTACCTGCATCCTGAGCCAATCGCTGCAAATGACTGAATGCACATAATGTAAGCACTTGAAATCATATACATTTCGACAATCTGTTAGTCCAACAATGAATTTCATTAATAAGCAAAACTAGGCACAGTAAACGAAATGTTGTAGTGCTTTGCATGTAAAAAGTGAttcaatttacaataaaaaagtgatataaTCTTA

Function

NR:

description
PREDICTED: C-X-C chemokine receptor type 5-like

GO: NA

KEGG:

id description
K04190 CXCR5, BLR1, CD185; C-X-C chemokine receptor type 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264215.1 True 2761 mRNA 0.39 2 12592067 12595389

Neighbor

gene id symbol gene type direction distance location
nectin1b nectin1,pvrl1b,LOC107670612,LOC107691861,LOC107563312,LOC107758086,LOC107561861 coding upstream 212815 12189464 ~ 12379252 (+)
LOC122323085 LOC107691900,LOC107574923,LOC107715548 coding upstream 690111 11898259 ~ 11901956 (+)
pgr LOC107563516,LOC107691935,LOC107732778,LOC107709819,LOC107684613 coding upstream 1231262 11351812 ~ 11360805 (+)
baz1b baz1b,LOC107684612,LOC107709818,LOC107714438 coding upstream 1329997 11245321 ~ 11262070 (+)
bcl7bb bcl7bb,LOC107557834,LOC107692047,LOC107711066,LOC107709815,LOC108429883 coding upstream 1347375 11240627 ~ 11244692 (+)
st14a LOC107758079,LOC107668533,LOC107554966,LOC107714535,LOC107670627 coding downstream 258771 12854160 ~ 12867723 (+)
dhx34 dhx34 coding downstream 272652 12868041 ~ 12875690 (+)
bicra gltscr1,LOC107758076,LOC107565091,LOC107554986,LOC107670631,LOC107668814,LOC107714538 coding downstream 296595 12891984 ~ 12904583 (+)
ehd2b ehd2,ehd2b,LOC107565090,LOC107668886,LOC107670629,LOC107554987 coding downstream 309953 12905342 ~ 12914313 (+)
b3gnt2l LOC107758074,LOC107669052,LOC107554988,LOC107670608,LOC107753015,LOC107565088 coding downstream 331296 12926685 ~ 12931168 (+)
G125760 NA non-coding upstream 2123 12579725 ~ 12589944 (+)
G125753 NA non-coding upstream 179822 12411865 ~ 12412245 (+)
G125750 NA non-coding upstream 197335 12393511 ~ 12394732 (+)
G125714 LOC107568232,LOC107671620 non-coding upstream 552623 12038945 ~ 12039444 (+)
G125709 NA non-coding upstream 688075 11903459 ~ 11903992 (+)
G125783 NA non-coding downstream 40767 12636156 ~ 12636383 (+)
G125784 NA non-coding downstream 45803 12641192 ~ 12641436 (+)
G125855 si:ch211-71n6.4,LOC107758068,LOC107753016,LOC107670624,LOC107578946,LOC105902995 non-coding downstream 414485 13009874 ~ 13012900 (+)
G125877 NA non-coding downstream 742365 13337754 ~ 13339066 (+)
G125879 NA non-coding downstream 751289 13346678 ~ 13346937 (+)
trpc6b trpc6b,trpc6a,LOC107713306,LOC107691992,LOC108429885,LOC108264040 other upstream 1246270 11330221 ~ 11345797 (+)
selenot1b selt1b,LOC107710848,LOC107684611,LOC107557827,LOC108429894 other upstream 1354920 11234331 ~ 11237147 (+)
ccnl1a ccnl1a,LOC107710830,LOC107563513,LOC107684610,LOC107691967,LOC107557837 other upstream 1358253 11226113 ~ 11233814 (+)
G125496 snrpd2,LOC106612977 other upstream 1622300 10968085 ~ 10969767 (+)
G125461 ugt5c1,LOC107692742,LOC107738533 other upstream 1754791 10824974 ~ 10837276 (+)
G125830 NA other downstream 214061 12809450 ~ 12822781 (+)
G125836 NA other downstream 285199 12880588 ~ 12884612 (+)
napab napab,LOC107668964,LOC107758075,LOC107670630,LOC107714540,LOC107565089,LOC108413256 other downstream 321837 12917226 ~ 12925468 (+)
glb1l2 glb1l2,si:dkey-224e22.2,LOC107554970 other downstream 351452 12946841 ~ 12955945 (+)
LOC122362547 LOC107672480,LOC107758042,LOC107554971 other downstream 621095 13216484 ~ 13222148 (+)

Expression


Co-expression Network