CI01000001_04395469_04399381 (FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A)


Basic Information

Item Value
gene id CI01000001_04395469_04399381
gene name FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4392314 ~ 4399804 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_04395469_04399381.mRNA
ACTATTTGTCCTATTACTATATTTTTTCATGTGGGACTGGCCACAGTAGTCATCAGCAGGGTTTATGTTAAATCAGTGCGATGCCATTGGACCCTCTCCCCTCTTTTGAGTTTCCAGCAGACGCACAACGCGTCTTCTCGCTGCGGTCATGTGACCCGACAGCATATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCGCAAACAGCTGTGAGTGAAACAGTGTGCAGGAGGGCTCTTCAGAAACACACACGAGCGGGACAAAATGGGAGTGGAGATCGAGACCATAACCCCCGGCGATGGGAGGACTTTTCCCAAAAAAGGACAGACATGTGTGGTGCATTATGTTGGCTCTCTGACAGATGGACGAAAGTTTGACTCTTCCCGTGACCGTGACAAGCCATTTAAGTTCAAGATTGGTAAACAGGAAGTGATCCGTGGCTGGGAGGAAGGTATTGCGCAGATGAGTGTGGGCCAACGCGCAAAGCTGACCTGTTCACCTGATTTTGCCTATGGTAATAAAGGCCATCCTGGGATTATTCCCCCAAACGCCACCCTCATCTTTGATGTGGAGCTTCTTAGTTTGGAGTGATTTAATGCTCTTCACTGCCTTTTTATTCATTTTTCATTGTTTTATAAATGTTTCAAGTGTCAAAAGTTTAGTCTTAACTTTAGAAACTTAATTAAA
>TU17347
NNNCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCGCAAACAGCTGTGAGTGAAACAGTGTGCAGGAGGGCTCTTCAGAAACACACACGAGCGGGACAAAATGGGAGTGGAGATCGAGACCATAACCCCCGGCGATGGGAGGACTTTTCCCAAAAAAGGACAGACATGTGTGGTGCATTATGTTGGCTCTCTGACAGATGGACGAAAGTTTGACTCTTCCCGTGACCGTGACAAGCCATTTAAGTTCAAGATTGGTAAACAGGAAGTGATCCGTGGCTGGGAGGAAGGTATTGCGCAGATGAGTGTGGGCCAACGCGCAAAGCTGACCTGTTCACCTGATTTTGCCTATGGTAATAAAGGCCATCCTGGGATTATTCCCCCAAACGCCACCCTCATCTTTGATGTGGAGCTTCTTAGTTTGGAGTGATTTAATGCTCTTCACTGCCTTTTTATTCATTTTTCATTGTTTTATAAATGTTTCAAGTGTCAAAAGTTTAGTCTTAACTTTAGAAACTTAATTAAATCAATATCTCTTTCTGTCAGGCTGTATTTTTAGTCATTCTTCTCAGAACCACCTTTATTCAGCATCCCACTCGTACAGTTTTAGGCACATTATATAAAGATCTGTGCTTCATTTTATCAAACTTTTGCTTTGGTCTCGTTACATCTGAACTAATTCTTAAACTCTTTTAATTTCAATCCAAGATTCTTCCTGTGTAATTGATATGATATCACCAAATCACCAAAAACCTTGCAATGTCCTTAATCTTGAACTTGAACCCGACAAACTCCGATTCAACATGTTAATTTGGCGACCAACGGCAACAGACGCTGACAGGGTAATACGACAAAACCCAACAAAGTGTCATTGTCGTTGGTCGCCGTCTGTTGGTGCAGTGTAAATTGGCCTTTAGACTTGTATTCTCTTTTGTGACTTTTTCTCGCACTGTGATTGTTGTTGGCTTGAAACCAAGTACAAATGTGACTGTAGACAAATTTGTTACAAAAATCTGCGATTTTATCCCTGAATTGACATAAATTTATCTTAAAGATGTTATGTTTGTGATATAAAAATTTAAATATTTGTTGCATTGTTACTTTTCACATTGAATAAATTAATAAATTACATTTAATATTTTTTACATTTAGAAAATACTTTTTTTTTTTTTTGATTGTCCACTTTAGACATTCTACTAACTATAAGTAAGTTTGCAACTACATGTCAAATAACTCTCAATAATTTGCTACTACATGTCAAATAACTCTCACTGGAGTATTAGTAGACTGTATTAGGTTAGGTTTAGGTGTTAGGGTTCGGGTTAGTAGAATAAGTTGACATGTAGTTGCAAAGTTACTTATAGTCAGTAGAATGTCTGTTGGCAAGCATCAAAATAAAGTTTTATCAGATATTAAACAGACTACTAATTCTCTAACGACATGTCATGCAGATGCAAAGATACTTAGTTAGCAGAAATACAACCCCAAATCAAGAAAAATTGGGACATTTTGTAAAACGCAATAAAATCAAGAATCTGTGATTTGTTAATTCTCTTGAACCTTTATTTAACTGACAAAAGTACAAAGAAAATGTTTCCAAATGAATTGTATTTTGTAAGTATAAAAAAATTATGATTTTGATGGCTGCAACCCACTCCAAAAAAGTTGGGACAGAGGCACAATAATAGTGAAAAGATTACAGAATATTCAAGTTGAACAGTTTTTAAACAGTCCACAATTAGCAGGCGAATTGGAAATAGCCAGGTGAGGGTATCGTGTTTGGGTATAAAAGGAACATCCATCAAAGACTCTGTTTTGCAAGCAAAGATGGGTCATGGCTCACCACTTTGCTCCAAATTTCATGAGAGAACTGTCAAACAATTCTAAAATCACATTTCTCAATGCAAGATTGCAAAGTATTTAGGTCTTTCACCATCTACCAAACATAATACTGTGAAAAGATTCAGAGAAATCTCAGTCAGCGTAGGGCAAGGCAGGAAACATCTGTTGAATGGGCGTGACTTTTGAGCCCTTAGATGGCACTGCATGAGAAACCTCAGGGATCATCCAGACTTTCATCAGCGACAGGTGCAAAAGCAAACATCTGTCATGGTATGGAGGTGCATCAGTGCAAACGGCATGGGTGACTTGTAGGTACCATTGACGTGGAAGTGTATATTGGGATTGTACAGAGACATCAAGATCTTTCCTGGGAAACAAGACAATGCTAGGCCTCATTATGCACATACATCAGTGTGGTTTCGAGACACTCTGCACTGTAGAAGGGATGTGTCTGACTGCCTGCCTGCAGTCCAGAACTGTCTCTTATTGAAAATATATGGCCCATCATGAAAAGAAGAATCGGATTGACCACAGACTGTTGAGCAGCTGTCTTGTATCAGGCGAGATTGGGCAAAAATTCCACTTGCAAAACTGCAACAATTAGAATCCTCAATTCCCAAGTGAATAAAAAGTGTAATTAAAAGGAAAGCTGATGTGACAGTGGTAAACATGCCTCTGTCCCAACTTTTTTTAAGTGTGTTGCAGCCATCAAAAATTCATATTTGTTTATATTTAAAAAAAAAAATACAATCAGGTTTGTCATTGAAAACACTGAACATCTTTTCTTTGTACTTTTATCAGTTAAATAACGGTTCAAGAGAATTAACAAATCACACATTCTTGACTTTATAGTGTTTTACAAAATGTTTCTTGATTTGGGGATGTAAAATGTTACCTAATTTTCAGCCAGTTTTGAATTGTTAGGTTTGAACAATCCTTGTGCCTCTTTGTGTGTTTTACACCTGCCAGAATTCCACAGGTTTTGTATATTTACAAAGCGATCAGAAGTGATCAGCTGATAAAGTGCTGTCCTGTAATCACACTTTACAGTAGACCAGGCTGATAATTATACAACGATGACGTATTATAGTACTGCAATTTCTGTCAATTTGGTGAGCAACATTTTTTTTTCTTGCATTAATAACATGCAGCTATTTGGAAATGTTATTTGAAGTGTTTACTTTGTTCTGTGTATGATTAGGTTGTGTAGTTGAGTAGGTGGCACATTTGGCACCATAGCAATGGATGCATGCCATATTTAGTACTTAAGGATTTTGTGATCATGTTTCACTCTTCATTTAAAAACAGTCAATTAGCTTGCTAATAAATATAATAGATGGGCACTTTGTGTTCTCATTGAGCTGGAACTATTTGTTTTCAATGATGGACAATGTCTGAAAAGCACATTGTGACCTACCCTATTTTCATCACACTACTTGCCATTAATATATACATTTTGATGCTAAATTATTTGCAGCCATCTGTTGTTGTTAATGTAGACCGTGCTGCCTATAGATAATTGATGTGATTATATTGGATGCAGATACAGTGACAGTACTTTTTGTATTGACATGATAATAATTTTTAATTCAAATGAAATCTGCAGACGCATAAATACTTGAGTCGATGCTGTTGATTTCTGTGATCAAGCATCAAATATATGGCTTTAATATTTCTGTAATGCTCTGTATATTTATGTATTGTCATACAGACAAAAAAACAATAAAATAATTAAAATGTGCT

Function

symbol description
fkbp1aa Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in chaperone-mediated protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in Graves' disease. Orthologous to human FKBP1A (FKBP prolyl isomerase 1A) and FKBP1B (FKBP prolyl isomerase 1B).
fkbp1ab Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in chaperone-mediated protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm. Is expressed in basal plate midbrain region; brain; optic vesicle; and retina. Orthologous to human FKBP1A (FKBP prolyl isomerase 1A).
fkbp1b Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in chaperone-mediated protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm. Is expressed in basal plate midbrain region; brain; cranial ganglion; and myotome. Human ortholog(s) of this gene implicated in Graves' disease. Orthologous to several human genes including FKBP1B (FKBP prolyl isomerase 1B).
fkbp1a Enables several functions, including FK506 binding activity; activin binding activity; and peptidyl-prolyl cis-trans isomerase activity. Involved in several processes, including SMAD protein complex assembly; regulation of protein metabolic process; and regulation of transmembrane receptor protein serine/threonine kinase signaling pathway. Located in Z disc; cytosol; and membrane.

GO:

id name namespace
GO:0060347 heart trabecula formation biological_process

KEGG:

id description
K01802 E5.2.1.8; peptidylprolyl isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_04395469_04399381.mRNA False 846 mRNA 0.44 4 4395373 4399804
TU17347 True 3616 TUCP 0.40 4 4392314 4399515

Neighbor

gene id symbol gene type direction distance location
CI01000001_04378975_04384527 SDCBP2, SDCB1, SDCBP coding downstream 10787 4378885 ~ 4384586 (-)
CI01000001_04343042_04345953 NA coding downstream 48789 4342041 ~ 4346641 (-)
CI01000001_04334653_04338081 NA coding downstream 56604 4334163 ~ 4338769 (-)
CI01000001_04060101_04062122 NA coding downstream 332580 4059510 ~ 4062793 (-)
CI01000001_03853690_03853904 NA coding downstream 541469 3853670 ~ 3853904 (-)
CI01000001_04402985_04419845 NA coding upstream 2976 4402780 ~ 4419877 (-)
CI01000001_04465168_04466295 CDC42.L, CDC42L2, CDC42P6, CDC42 coding upstream 65008 4463257 ~ 4466918 (-)
CI01000001_04468566_04523431 DNMT3BB.1 coding upstream 68405 4468209 ~ 4523431 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF coding upstream 326600 4725927 ~ 4728210 (-)
CI01000001_04732844_04744038 NA coding upstream 333040 4732844 ~ 4744038 (-)
G15609 NA non-coding downstream 42046 4353081 ~ 4353327 (-)
G15608 NA non-coding downstream 43518 4349922 ~ 4351855 (-)
G15605 NA non-coding downstream 54155 4339284 ~ 4341218 (-)
G15529 NA non-coding downstream 83772 4299568 ~ 4311601 (-)
G15625 NA non-coding upstream 49061 4448865 ~ 4449419 (-)
G15539 NA non-coding upstream 50405 4450209 ~ 4450461 (-)
G15546 NA non-coding upstream 56393 4456197 ~ 4458758 (-)
G15544 NA non-coding upstream 61171 4460975 ~ 4461433 (-)
G15537 NA non-coding upstream 61853 4461657 ~ 4461912 (-)
CI01000001_02258523_02262621 NA other downstream 2098161 2258442 ~ 2263103 (-)
G14228 NA other downstream 2338895 2055974 ~ 2056478 (-)
G14219 NA other downstream 2400475 1994210 ~ 1994898 (-)
G14104 NA other downstream 2627915 1763669 ~ 1771468 (-)
CI01000001_00362143_00378213 NA other downstream 3998240 361614 ~ 378213 (-)
G15736 NA other upstream 401097 4800901 ~ 4801395 (-)
G16332 NA other upstream 550885 4950689 ~ 4957842 (-)
G16462 NA other upstream 822973 5222777 ~ 5229585 (-)
G15533 NA non-coding downstream 75246 4270132 ~ 4317068 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022230 fkbp1ab coding NC_007134.7 CM002907.2 16688420 ~ 16692312 (-)