col9a2 (col9a2,LOC107722164,LOC107669993,LOC107698977,LOC107712764)


Basic Information

Item Value
gene id col9a2
gene name col9a2,LOC107722164,LOC107669993,LOC107698977,LOC107712764
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 688221 ~ 705673 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218160.1
CTATAACAAAGATACACAATGCTGACTTTGGAAATGTTCTCGTTATTAGACCTTGCGGACCACTACAGTGGAGAACTGATTTCACACATCCATTAAAAATCAACCTTGAGTTCAGCTAGTGAAAAGTCATATGCAAAAATTGCCTAGGAAAAGTTGCTTGCGTTGTACATTTTGAGGCAAAATGCAGATCGGAGAATCTGTTTACGAAgcctcaaaaacaaacattccaGTGTCCTGAAGCTCCACGGGCCGCGCGCTAAGTCAACGCCTGGATGTGCAACGTTTATATTCAACAATCAATTGAGGTATTCAGTAATGTGGGCCCGAGCAACACacaaatgcagctgtgtccagTCAGCTTCCTAGAGCTCCGCAGGATGCACGGACAGTCCCCAGGAGTCTCCGCCTCCCTCGCGTGCGATGGCTTCTCAGGTCCCTGCCGCTGTGTTTTTCTTCCCTGTCCTGGGCAGCGCGCAcagtcacacatacacacagcttTCTTTTCCCTGGATCCACCATCCTGGGCTGAGAAGCCAGGAGAGAGGGTGGCGAGGTTTGGAGGAACCGCTGGGACGACTGGATTTTGAGTAGCGATTCTTCACCATGGACAGATTCTTCATCGTCTTTAGAAGCCTGGTCCTGTTGCAGGTGCTCTGCTTGGCCTTATCGCAAGTGacCGGTCCGCCTGGAGCGCAGGGCCCCCCTGGTCTCCCCGGCCCCGCTGGAACTCCCGGCGCCGACGGCATTGATGGTGAAAAGGGTCCTCCTGGACCTCCTGGACCAGCAGGTCAAAAGGGAGAGTCAGGTGAGCCCGGTCCTGATGGATCTCCAGGGGAGGATGGCATCGATGGTTTGATTGGGGCTAAGGGTGAGAGGGGCCCTCGTGGTAATCCTGGACCAAAGGGTCAGCCAGGGCCTGGTGGGTCACCAGGGCGTCCTgGACCTGGACTGGCTGGACTTcctGGAGCAGCAGGACCCATTGGGCTTCCTGGACAAATTGGGCCTACTGGGCCAAAGGGGGACATGGGAAGTCCTGGAGCTCCAGGTTTACCCGGACCTCCAGGAAAGCCGGGTCCGCCAGGAAAGTTTTTGGGTGTAGAGGAAGGCAGTGCTGACTTTCAGTGTCCAACCAACTGTCCACCTGGACCAAAAGGTCCTCAGGGCCTACAGGGAGTGAAGGGACATAAAGGTCGCTCTGGGGTACTGGGAGATCCAGGAAGCATTGGAAAATtgGGCATAAAGGGCGAATTCGGCATCTCCGGTGAACAAGGAATACCAGGCCCtccaGGTCCACAGGGTCTGAGAGGGTATCCAGGAATGGTGGGGCCCAAAGGCGAGTCGGGACCACGTGGTTATAAAGGGATTTTAGGACCAATCGGCATCCCTGGACGCCCTGGTGAAGAGGGACCCCAAGGACCACCTGGAGAGCCTGGTGACAAAGGCGAAATtGGAGAGCGTGGAGTTCGAGGGCCTCAGGGGGTGGTCGGAAAGAAGGGAgagaatGGTCTTCCAGGAATTGATGGAAAAGATGGCACTCCTGGTATCCCAGGAATAAAGgGAGCTGCAGGACAAAATGGAAGACCTGGAGCCCCTGGGCATCAGGGAGATGCTgGTTTGCCTGGTATGCCTGGAGCCAAGGGTGAAATTGGAGTTAAGGGTGAGACCGGACCCAGAGGCTCGATGGGAATGCAGGGTTCTCCGGGACCTCAAGGAGAGCCTGGTCCTCCAGGGGAAGCTGGCATGGAGGGAGTACCAGGACCAAAGGGTGACAGGGGCGAAAGAGGAGCAGTTGGGCCTTCTGGTATTGTTGGCTTGCCTGGCAGTAAGGGAGAGAGGGGACCCATGGGCGTCCCAGGTGCTCAGGGTCTAACTGGAACTAAGGGTGACAAGGGATTCCAAGGCAAAGTGGGATCAAAGGGAGACGTTGGTGATCCTGGAGTAGAGGGATTGGCTGGGGAGAAAGGAGAGAAGGGACAATCTGGGGAGCCTGGACCCAAGGGACAGCAAGGTGTGACCGGCGATCAAGGGCACAACGGTCCTACCGGAGACCCCGGTAAACCAGGAGACCAGGGTCCTTCAGGCTTACCCGGTCCACGTGGCCTGCACGGAGAAAGAGGAGTTCCAGGGATGCCAGGAATACAAGGAGCACCTGGTCGTGATGCTACAGATCAGCACATCATTGACGTGGTCCTGAAGATGCTTCAAGAGAAGTTAGCGGCATTAGCGGTGAGCTCTAAGAGAGCCGTGCTGGGTGGAGCTGGTGTGATGGGACCTCCAGGTCCTCCAGGACCACCTGGACCTCCAGGACCTCAGGGACCTCATGGACTGACAGGCGGCCGTGGCATTCCTGGCATAATCGGGGGCTCAGGCCAGATAGGAAACACCGGCCTTAAAGGGAAGAGGGGTGcaaagggagagagaggagatccTGGACGTCCACATCCTGGCCAACCGGGACCACCTGGACTGCCAGGTCCTCCAGGTCTTGACGGTGTTGCACGTGACGGTAGGCCAGGCGAGCGAGGACCCCAGGGTGCAGTGGGTGAGCCAGGCCGTTCTGGAAAAGCTGGTCCTTCTGGTCTTCCTGGATATTGTGAAGCAGCTGCATGTTTGGCAGCGTCCGCCTACACTTCTCCCAGATTACAAGAGGCGGGAACAGTAAAGGGCCCATCCACTTAAATCAAGCCCTCTACTGGGGCATAAGAACAtctgggagagaaagagagagtcagaaagaaacaaagaaagggGGAGAAGCATGGAAAGAGGGGCGCACAGGCCTACTCTTCAATGGACACATTGTGAGGGGGGAGGGAACAGCTGCTGCTTGATATTGTGAACTTTTTGTATGTATTAGGATTGTTAATATATGATTTGACATCTGCGGAAAGGAAGTGATAAGTTGGCAATGTCAGCCGCTGCTGCTCTGTCCAACCTCACAGTACAGAGAGATGTGAGAACATTGCCAGTGACATcactgatgacatcatcatcgtGCACCCAGGACTAGAAGAACTATGAGAATGACAT

Function

symbol description
col9a2 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization and skeletal system development. Predicted to be part of collagen trimer. Predicted to be active in cytoplasm; extracellular matrix; and extracellular space. Is expressed in several structures, including axis; head; hypochord; nervous system; and pectoral fin. Human ortholog(s) of this gene implicated in Stickler syndrome; multiple epiphyseal dysplasia 2; and osteochondrodysplasia. Orthologous to human COL9A2 (collagen type IX alpha 2 chain).

NR:

description
PREDICTED: collagen alpha-2(IX) chain

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG:

id description
K08131 COL9A; collagen type IX alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218160.1 True 3030 mRNA 0.55 33 688221 705673

Neighbor

gene id symbol gene type direction distance location
phf14 phf14,LOC107722156,LOC107670007,LOC107712766,LOC107698992 coding upstream 31349 737022 ~ 810882 (-)
nxph1 nxph1,LOC107670023,LOC107566937,LOC107555956,LOC107712631,LOC107722163,LOC108410782,LOC108272426,LOC107698976 coding upstream 217213 922886 ~ 955788 (-)
LOC122323800 thsd7aa,LOC107670038,LOC107722152,LOC107698991,LOC108410784 coding upstream 253770 959443 ~ 993648 (-)
LOC122323802 LOC107664710 coding upstream 389317 1094990 ~ 1112229 (-)
dlgap3 dlgap3,LOC107664711,LOC107563279,LOC107698989,LOC107712634,LOC107722119 coding upstream 411298 1116971 ~ 1248823 (-)
G129618 adgrb2,LOC107722142,LOC107669951,LOC107712761 non-coding downstream 150418 521875 ~ 537803 (-)
G129635 NA non-coding upstream 13647 719320 ~ 722311 (-)
LOC122324168 NA non-coding upstream 157616 863289 ~ 894898 (-)
G129714 cx39.4,LOC107563282,LOC107664709,LOC107726142,LOC107712627,LOC107698984,LOC107555947 non-coding upstream 550872 1256545 ~ 1258314 (-)
G129717 NA non-coding upstream 566551 1272224 ~ 1272429 (-)
G129728 NA non-coding upstream 586958 1292631 ~ 1293279 (-)
thsd7aa NA other upstream 311482 1017155 ~ 1052124 (-)
LOC122323272 NA other upstream 366478 1072151 ~ 1094903 (-)
smim12 smim12,LOC107664707,LOC107726140,LOC107563281,LOC107712635,LOC107555952,LOC107698988 other upstream 573239 1278912 ~ 1280509 (-)
pef1 pef1,LOC107664714,LOC107726139,LOC107698987,LOC107712637 other upstream 575866 1281539 ~ 1287206 (-)
G129738 NA other upstream 793015 1498688 ~ 1499406 (-)

Expression


Co-expression Network