sprtn (sprtn,LOC107685751,LOC107727344,LOC107679685,LOC107742220,LOC107548399,LOC107733995)


Basic Information

Item Value
gene id sprtn
gene name sprtn,LOC107685751,LOC107727344,LOC107679685,LOC107742220,LOC107548399,LOC107733995
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 5066615 ~ 5072155 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219356.1
tgtagtgttattttaaactgtttgcaTATTGTAACACCAACACGTTGTAACATGAACATGTTGCTCTGCACGTAACGTAACATTATAACAATTAGacttacaaatgcatttaacagCATTTCCAACACTGTGCGACTTCACGATTGGCCAGCAATTTGGGTCTCGTAGGGCTCTGATGGAAACACActgacagttttcttttaaaaattcgAGACGTTAATCTTCATCGTCAAAGTGACGAAACCCCGCGATTagactataaatataaaactcttCGATCTAATAGGAAGAGTGTCGTTTGTCGCGATTAATGGTTTTGTGAGGAGTTTTTGTGCTGGTTGACGGCGTTGACCTGCTTTTGCTAAAGCAGACCGAAGATGGAGAATGATGACTTTTTACTCGCGCTTCGTTTACAAGAGCAGTTTGATCAAGAGACAGCGACTGCTGGATGGACGGATGAAGACTGCCCGTCCAGTAAAAAGCGGAGGATCGACTCCTCGGAGTCTGGTCTCATGGATGTGATTCCGTACTCCCAGCCCAGTCCAGAGAGACCGCTGTCCATCGTAGATGAGTCGTGGGAGACCCTGGACCCCAGTCCGGACGTGAGAGCCATGTTCCTGCAGTTTAACGACAAGTTCTTCTGGGGGAAACTCAGCGGTGTGGAGGTCAAGTGGAGTCCACGGATGACACTATGTGCCGGTGTTTGCTCTTACGAAGGAAGAGGAGGCTTGTGCTCCATTCGGCTCAGTGAACCACTCCTGAAGCTCAGACCCCGCAAAGATCTTGTACAGACTCTTCTTCATGAGATGATCCACGCTCTTCTCTTTGTGACTCAAAACAACAGAGATCGAGATGGCCATGGTCCAGAGTTCTGCAAACACATGAACAGAATCAACCAAGCAAGTGGCACCAACATCACTATATATCACTCGTTTCACGATGAGGTGGATGTGTACAGGCAGCACTGGTGGCGCTGTAACGGACCCTGTCAGAATCGCAGACCGTTCTTTGGATACGTAAAGCGTGCGATGAACAGACCTCCCTCGGCCAGAGACCCCTGGTGGGCTGAGCACCAGAGGACCTGCGGTGGAACATACACCAAAATCAAGGAGCCAGAGAATTACGGGAAAACTGGCAAAAGTGATCAAAAGAAAGACAAGAATCCTTCCGAGGGGACCTCTAAGAATTCAAAGCCTCCATGCAGTACAACAGGTTCTGGCTCACAAGACATCAGAAATGTCATTCCATTCAGTGGGAGAGGTTTTGTTCTTGGAGGGAACACACAGATATCCACAAACAAGCAGAATCAGAGTCCTCCTAAAGCTCAACCCGAACCTCTTGCCTCTCCACCTGACTCACCGCTCCTTCCAGGTCTGCGACTCATCGAGGCGAACTTGCTCAAAAGAGTCAGCACAGGTGCATCGAATGTTCAGCGCAAAAAGTCTGTTGGTAACACCAATGCCTTCGCCAACGTCAACGGTTCGCCTGTGAGAATTTCCAAAGTCAATGACTTTAAAGGCAAGCAGAGGTCAGTGCGAGATCTCTTCCAGGCCATAGTCCTTAAATCTCCAGAGAGAGCGGTCAGTGCTGCTGGTTCCTCCAAACCTGCCGCAGACGCCTCCTCAACAAACCCTACTAAAGGCAATGGACCATCTTCATCTAGTGCCTTAGACGGGCAAACTAGCCTGATCAGTAACCATCACTCATTCGGTGCCACAAAGTCAGAGTCGCATCTCTCCAAATATTTCGGCAACAGTGCTCAGACTTTGAAATTCCAAGATTCACAGTCGAAAACATCAGGAAGCCCCCAAAAGTCTGCAACTGGAACACTGGGTTACTTTTCTAAGCTCTTTGGAAGCAACCAAAAACTAAGATCAGATGCTTCAAGCTCAGGAAACACTGGCGGTCCCCAAAATTCACATACTTTAGTTAATTCAGGGTCCAGTTCCAAGCACTTTGGAGGCTCTAAAAAGCCTGATTCCAACATTCCGAGCCCTAGAAGCACCGGCAGCCCCCGGACATCAGGGACGACGCCTTCGGGAGCCAAGAAGAGATCATGGGACGACCATAAATCTGAACATAGCTTTGATTACTTCCAGCAGACAAACGCCAAGTCCTCCACGTCCACAGCGCAGCAGAGAGAGGAGGTGAAAGACATCGTCCTGCAAGCAAACGATCCTCCTCCAGTCCTGATCACCGTCCATTGCCCAGTGTGCTGCATCAAAGTCCCAGAGTCCACAATTAATGAGCATCTGGATTCCTGTCTCTCATAATTTCTGAGAGAAAGTACAGGCTGTAGGGCTTTAATAATGCTAGGAGAGGTGTTTACTGTGCTATTCCAGTGCTCAGGTATATAATAGAATtctattcaaatagaaagaTTTTATGAGATATTTTAATTCCAACGCAATAAGCGAGTTTTGGTATTGAAATCTGCAAAGCACGCCATATATTCTTTTTGCGCTTATTGACTTATTCTACCTCGTTTGTGCGTCACGGGAAAATCTTTTTCGTCATTCACAGATTAGTTGAAAACGAGTGAGTGGTTTGAAGAGGCGCCACTCGCTGTCCTTGTGCAAGTTGATATCCGCGGTTCGTGTCGAATCAGCAGTACTGAATTTCACTGTCCGCTGTGGGATTTAGATGCGCTTAGCTTTCTGCCGGATCAGGCTTTGCAAGGTCTCTTTCGTTCGGTGTCATCAATAACAGCTCTGGCAGGTCGGCCCGTGAGTGAAGGGGCGGAGCTTGTGCCGCCTACTGCATGATCATTTCACACCTACTTTCCGTCCTGGAGGAATTAACCCCACCCAGAAATGAATATTGGGTGCGCAGGTTAAAACTTTCTGGTGTAATAATAGTCAAGATGTATTGTTAAGTCACGAGTATTGTTGTTTCAAAACCAGCGACCCACCTTTAAAGGTAAACAATGGCTGATGACGAGTTCACGCTGCTCGGGTTACACGTAGATCACGCAGATGTTACTTTAGTTCACTTATACGTAACATTGATTTACGTAAAAAGAGAGGCAGGACGCATTGATATGTTTAGCGTTTGACACGCTGCGGGCATCGGTGATGTCATTTGTAATGTATGCAAGTGGTTTTAACATGCACTACAGGTTCTCGAGGCAAACCGGGAGCGAAAACTTTGCACAATTTATTGTTGGCCTTTTTAGCggcagatgttttgttttagaaatcGTTTTACATTGAAActcttttaacattaaattaagacgTTTATTAAGTGgttataaatgtttgtttgtacgGTTATGTGGAATTTAACGCGTTCGTAAAATTCTAAATTGTGCCTGATTTTTGACTCATGTTGCCTATAAACTGTTGcgttaactttaaataaatattcagttatGTA

Function

symbol description
sprtn Predicted to enable double-stranded DNA binding activity; metalloendopeptidase activity; and single-stranded DNA binding activity. Acts upstream of or within DNA damage response, detection of DNA damage. Predicted to be located in chromatin and nucleus.

NR:

description
PREDICTED: sprT-like domain-containing protein Spartan

GO: NA

KEGG:

id description
K24051 SPRTN; SprT-like domain-contaning protein Spartan

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219356.1 True 3378 mRNA 0.46 5 5066615 5072155

Neighbor

gene id symbol gene type direction distance location
fam89a fam89a,LOC107727345,LOC107742210,LOC107685750,LOC107679680 coding downstream 2188 5060707 ~ 5064427 (-)
ttc13 ttc13,LOC107679664,LOC106571397 coding downstream 14180 5034349 ~ 5052435 (-)
LOC122324828 cnksr3,ipcef1,LOC107560196,LOC107742203,LOC107679663,LOC107678675 coding downstream 56056 4973048 ~ 5010559 (-)
LOC122324969 tiam2,LOC107560208,LOC107678678,LOC107742216 coding downstream 99834 4928862 ~ 4966781 (-)
LOC122324970 cldn20,LOC107560197,LOC107678665,LOC107555306,LOC107679668,LOC107742202 coding downstream 138455 4917807 ~ 4928160 (-)
c20h1orf131 LOC107727347,LOC107685755 coding upstream 43693 5115848 ~ 5121484 (-)
ints7 ints7,LOC107685756,LOC107659878 coding upstream 303798 5375953 ~ 5385180 (-)
kcnk3a kcnk3,kcnk3a,LOC107562302,LOC107685790,LOC107574791 coding upstream 344594 5416749 ~ 5431038 (-)
LOC122324477 ezrb,ezr,LOC107685759,LOC107745284,LOC107549516,LOC107733309,LOC107659875,LOC106607585 coding upstream 407519 5479674 ~ 5502647 (-)
rsph3 rsph3,LOC107562297 coding upstream 432101 5504256 ~ 5514040 (-)
G136176 NA non-coding downstream 32811 5033599 ~ 5033804 (-)
G136175 NA non-coding downstream 47749 5018361 ~ 5018866 (-)
G136069 NA non-coding downstream 329809 4736549 ~ 4736806 (-)
G136012 NA non-coding downstream 620412 4445773 ~ 4446203 (-)
trnat-ugu_51 NA non-coding downstream 768060 4298483 ~ 4298555 (-)
G136180 NA non-coding upstream 19145 5091300 ~ 5097061 (-)
G136188 NA non-coding upstream 40018 5112173 ~ 5119766 (-)
G136350 LOC107746236,LOC107672706,LOC107741192,LOC107663224,LOC107557109 non-coding upstream 580144 5652299 ~ 5652925 (-)
G136356 NA non-coding upstream 629026 5701181 ~ 5701475 (-)
G136368 NA non-coding upstream 787798 5859953 ~ 5860623 (-)
selenol sell,LOC107679675,LOC107558766,LOC107742218,LOC107742854 other downstream 37048 5024806 ~ 5029567 (-)
si:ch73-111k22.3 LOC107742221 other downstream 54035 5011381 ~ 5012580 (-)
LOC122324820 ccdc85cb,LOC107678669,LOC107747948,LOC107572128,LOC107555299,LOC107740595,LOC107751728,LOC107668618,LOC105902331 other downstream 484518 4564356 ~ 4582097 (-)
LOC122325550 NA other downstream 1091357 3968763 ~ 3975258 (-)
nrxn3b nrxn3b,LOC107747953,LOC108410406,LOC106571678,LOC102203786,LOC101486071,LOC105017684 other downstream 1196549 3638289 ~ 3870066 (-)
LOC122324433 LOC107727350,LOC107558762,LOC101885478,LOC106571404,LOC103026919,LOC106607809,LOC105897019 other upstream 89051 5161206 ~ 5360069 (-)
LOC122324832 enpp1,LOC107745282,LOC107685780,LOC107562320,LOC107733306 other upstream 519183 5591338 ~ 5598666 (-)
G136357 NA other upstream 629524 5701679 ~ 5703911 (-)
zpax2 NA other upstream 851911 5924066 ~ 5931122 (-)
G136460 LOC107582106,LOC107740299,LOC107664831,LOC107668145,LOC107549511 other upstream 1202599 6274754 ~ 6302976 (-)

Expression


Co-expression Network