rsph3 (rsph3,LOC107562297)


Basic Information

Item Value
gene id rsph3
gene name rsph3,LOC107562297
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 5504256 ~ 5514040 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220023.1
ACGGTAACGGTAACAACAGCTGCAGCGGTTACAAATAGGGAAACGAGTCCAGGTCTCAGCAGCCAACAGTTAATGCTTTCAGCTTACAGTAACGCATTTGATACTACTATTAAAGGAGAAAATGGCATCTAGTTTACAGACGCAAAACGAGACGCAAAGCGGAGTTTACACGTTCTCCAGTCGCCCGCGCGCGGTTCCCAACCGACCCAAATACAGACAAGACGCTCCGCCGCTAAATGAAGAACAGAGCAGTTATGGAAACATCATGTATGATCGACGCGTTGTCAGAGGAAACACATATGCTCAACATATTCTACCCATTaCATCTCAGCCCGATCCAGTCGAGTTCCTGAGACAGCAGGAGGCCAAAAAAAGAGCCTTGTCCAGAAAACGGCTGAAGGAGCAGTTTGGCCCAAAAACACCAGAACCACTAGAGGGCAGAATGAACATAGACGTGCAGACAGAGATGTATCTGGAAGAACTGAGCGATCACATAGAGGACGTCAGCGTGGAATGCCAAACAGATATGTTCCTGGACAAACCAGCCACTCCTCTCTTCATCCCAGCCAAAACTGGACGAGATGCAGCCACACAAATAGAAGAGGGAGAGCTGTTTGATTTCGACGTGGAGGTCCAGCCTGTGCTGCAGGTGTTGGTGGGAAAGACCATCGAGCAGGCTTTGCTGGAAGttctggaggaggaggagctggcCAACCTGAGGGCCCAGCAGCAGGTGTTCAAAGAGATCCGCGCCGCTGAGCTGGTGGAGGTGCAGAGGCTGGAGGAGAGGGAACGGCGCCTCCGTGTGGAGAAGGAAAACCGGATAAAGCAGCAGAAGGCAGtgctggaaaaagaaaaggagaccGCAGATAAAATAGCTGCGAGAGCATTTGCTCAGCAGTATTTGTCTGACTTGTTGCCCTCGGTTTATTCCAATCTAAAGGATCGTGGCTACTTCTATGACCCTGTGCAGAGAGATATAGAGACCGGATTTCTCCCTTGGCTGATGGAAGAAGTCACCAGTACTTTAGAACAGAGATTTATAGCAAGAACAGTGCTTGACGTGCTCATTCAAGACGTCACTAACCAAAGACTTGAGGCCTTTCACACGAAAGAATAAGAAAAGCTCATTCAGCTCAAATCTGGAGGGAAAGTATGAAGGAGTTCATGCGGGATAAACTTCttcttattataaatgtattattcatatattatttgaataaaaaatgtaaaaaaaattgttttgaactGCACTTCAAGAACAACACTAGGGGGCGCTGCGGAGCGAAAACACTGACTTTCACTAAAACTCAATCCTGGCCACTTTGTTGCtgtaatgcatttgtattttacgAAGAGCACGTGAATGACTCTcgttcatatttaaaatctgtttaacatttatagaagTGGTACTATATAATTTTGAGGACTGGCCTATCGTGAGTATATTGAACACGATGCTGTACTAAATTGTAAAAAgatgctattatttttttacgaCTCaataacttcataaaaaaacacttttcagcCTATCTGTCTCTCGGTCCTCGACTAGACGCCGCGACGCGATCTGATCCACGGTTCTGCCTCGGCTTCCGTTCACCTCGCCTATATACGGCTCTATTTTAGTCTTGCCTCTCGATTGGTCGACTCCCACCTCTGAC
>XM_043220024.1
ACGGTAACGGTAACAACAGCTGCAGCGGTTACAAATAGGGAAACGAGTCCAGGTCTCAGCAGCCAACAGTTAATGCTTTCAGCTTACAGTAACGCATTTGATACTACTATTAAAGGAGAAAATGGCATCTAGTTTACAGACGCAAAACGAGACGCAAAGCGGAGTTTACACGTTCTCCAGTCGCCCGCGCGCGGTTCCCAACCGACCCAAATACAGACAAGACGCTCCGCCGCTAAATGAAGAACAGAGCAGTTATGGAAACATCATGTATGATCGACGCGTTGTCAGAGGAAACACATATGCTCAACATATTCTACCCATTaCATCTCAGCCCGATCCAGTCGAGTTCCTGAGACAGCAGGAGGCCAAAAAAAGAGCCTTGTCCAGAAAACGGCTGAAGGAGCAGTTTGGCCCAAAAACACCAGAACCACTAGAGGGCAGAATGAACATAGACGTGCAGACAGAGATGTATCTGGAAGAACTGAGCGATCACATAGAGGACGTCAGCGTGGAATGCCAAACAGATATGTTCCTGGACAAACCAGCCACTCCTCTCTTCATCCCAGCCAAAACTGGACGAGATGCAGCCACACAAATAGAAGAGGGAGAGCTGTTTGATTTCGACGTGGAGGTCCAGCCTGTGCTGCAGGTGTTGGTGGGAAAGACCATCGAGCAGGCTTTGCTGGAAGttctggaggaggaggagctggcCAACCTGAGGGCCCAGCAGCAGGTGTTCAAAGAGATCCGCGCCGCTGAGCTGGTGGAGGTGCAGAGGCTGGAGGAGAGGGAACGGCGCCTCCGTGTGGAGAAGGAAAACCGGATAAAGCAGCAGAAGGCAGtgctggaaaaagaaaaggagaccGCAGATAAAATAGCTGCGAGAGCATTTGCTCAGCAGTATTTGTCTGACTTGTTGCCCTCGGTTTATTCCAATCTAAAGGATCGTGGCTACTTCTATGACCCTGTGCAGAGAGATATAGAGACCGGATTTCTCCCTTGGCTGATGGAAGAAGTCACCAGTACTTTAGAACAGAGATTTATAGCAAGAACAGTGCTTGACGTGCTCATTCAAGACGTCACTAACCAAAGACTTGAGGCCTTTCACACGAAAGAATAAGAAAAGGTAACGAAAGCTCATTCAGCTCAAATCTGGAGGGAAAGTATGAAGGAGTTCATGCGGGATAAACTTCttcttattataaatgtattattcatatattatttgaataaaaaatgtaaaaaaaattgttttgaactGCACTTCAAGAACAACACTAGGGGGCGCTGCGGAGCGAAAACACTGACTTTCACTAAAACTCAATCCTGGCCACTTTGTTGCtgtaatgcatttgtattttacgAAGAGCACGTGAATGACTCTcgttcatatttaaaatctgtttaacatttatagaagTGGTACTATATAATTTTGAGGACTGGCCTATCGTGAGTATATTGAACACGATGCTGTACTAAATTGTAAAAAgatgctattatttttttacgaCTCaataacttcataaaaaaacacttttcagcCTATCTGTCTCTCGGTCCTCGACTAGACGCCGCGACGCGATCTGATCCACGGTTCTGCCTCGGCTTCCGTTCACCTCGCCTATATACGGCTCTATTTTAGTCTTGCCTCTCGATTGGTCGACTCCCACCTCTGACC

Function

symbol description
rsph3 Predicted to be located in cell projection; cytoplasm; and cytoskeleton. Predicted to be active in cilium. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 32. Orthologous to human RSPH3 (radial spoke head 3).

NR:

description
radial spoke head protein 3 homolog

GO: NA

KEGG:

id description
K23965 RSPH3; radial spoke head protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220023.1 False 1670 mRNA 0.46 9 5504257 5514040
XM_043220024.1 True 1681 mRNA 0.46 9 5504256 5514040

Neighbor

gene id symbol gene type direction distance location
LOC122324477 ezrb,ezr,LOC107685759,LOC107745284,LOC107549516,LOC107733309,LOC107659875,LOC106607585 coding downstream 1609 5479674 ~ 5502647 (-)
kcnk3a kcnk3,kcnk3a,LOC107562302,LOC107685790,LOC107574791 coding downstream 73218 5416749 ~ 5431038 (-)
ints7 ints7,LOC107685756,LOC107659878 coding downstream 119076 5375953 ~ 5385180 (-)
c20h1orf131 LOC107727347,LOC107685755 coding downstream 382772 5115848 ~ 5121484 (-)
sprtn sprtn,LOC107685751,LOC107727344,LOC107679685,LOC107742220,LOC107548399,LOC107733995 coding downstream 432101 5066615 ~ 5072155 (-)
tagapb tagapb,LOC107685761,LOC107745285,LOC107733310,LOC107667698,LOC107549517,LOC107562296 coding upstream 6106 5520146 ~ 5537376 (-)
trnal-caa_1 NA coding upstream 28237 5542277 ~ 5542388 (-)
trnal-caa_2 NA coding upstream 29250 5543290 ~ 5543401 (-)
trnal-caa_3 NA coding upstream 30266 5544306 ~ 5544417 (-)
trnal-caa_4 NA coding upstream 31282 5545322 ~ 5545433 (-)
G136188 NA non-coding downstream 384490 5112173 ~ 5119766 (-)
G136180 NA non-coding downstream 407195 5091300 ~ 5097061 (-)
G136176 NA non-coding downstream 470452 5033599 ~ 5033804 (-)
G136175 NA non-coding downstream 485390 5018361 ~ 5018866 (-)
G136069 NA non-coding downstream 767450 4736549 ~ 4736806 (-)
G136350 LOC107746236,LOC107672706,LOC107741192,LOC107663224,LOC107557109 non-coding upstream 138259 5652299 ~ 5652925 (-)
G136356 NA non-coding upstream 187141 5701181 ~ 5701475 (-)
G136368 NA non-coding upstream 345913 5859953 ~ 5860623 (-)
G136388 LOC107685791,LOC107582172,LOC107712426 non-coding upstream 534928 6048968 ~ 6050633 (-)
G136398 LOC107685776,LOC107712433,LOC107582143 non-coding upstream 614458 6128498 ~ 6145661 (-)
LOC122324433 LOC107727350,LOC107558762,LOC101885478,LOC106571404,LOC103026919,LOC106607809,LOC105897019 other downstream 144187 5161206 ~ 5360069 (-)
selenol sell,LOC107679675,LOC107558766,LOC107742218,LOC107742854 other downstream 474689 5024806 ~ 5029567 (-)
si:ch73-111k22.3 LOC107742221 other downstream 491676 5011381 ~ 5012580 (-)
LOC122324820 ccdc85cb,LOC107678669,LOC107747948,LOC107572128,LOC107555299,LOC107740595,LOC107751728,LOC107668618,LOC105902331 other downstream 922159 4564356 ~ 4582097 (-)
LOC122325550 NA other downstream 1528998 3968763 ~ 3975258 (-)
LOC122324832 enpp1,LOC107745282,LOC107685780,LOC107562320,LOC107733306 other upstream 77298 5591338 ~ 5598666 (-)
G136357 NA other upstream 187639 5701679 ~ 5703911 (-)
zpax2 NA other upstream 410026 5924066 ~ 5931122 (-)
G136460 LOC107582106,LOC107740299,LOC107664831,LOC107668145,LOC107549511 other upstream 760714 6274754 ~ 6302976 (-)
si:dkey-63b1.1 si:dkey-63b1.1,LOC107668138,LOC107747376,LOC107740302,LOC107582148,LOC107664798,LOC107549507 other upstream 896922 6410962 ~ 6414013 (-)

Expression


Co-expression Network