lrfn5b (lrfn5b,LOC107659815,LOC107564320,LOC107712211,LOC108411613,LOC108257655)


Basic Information

Item Value
gene id lrfn5b
gene name lrfn5b,LOC107659815,LOC107564320,LOC107712211,LOC108411613,LOC108257655
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 26036394 ~ 26049767 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220357.1
aataataaatatttacgacaggaaatataacaaaatatcttcatggaacatgatcttcacTTAATATACTAccgatttttggcataaaagagaaatgtatAATTGTGTCCCGTGCAGTGTTTTGTTGGCTACtgctacaaaaaataaatgatatgaagaaataaagaacGAAAAGTCTTCGAACAATCCATCGCTATAGGAGGGAAACGTCTCGACGTCAGCGCGCTTGATTAATATTCCAGAACGCGCCGTTCGATTGGAAGGCCGTGGCGCCGCCcacttaatattcatgagctcagCCCAGGCCGTACTAGGATTGGTAATTTGGGTGCATGCAGGCGTAATGCGGAGAGGCGATCCCGGCCGGAGCTTCTGTCTGCGCTTTCATTAAAGGAGGCTCCTAATGAACGTCTCATACGTTACAGGACGGCGTTTAATCCCCCGCTCGCGCGCGCGTCGGTCATGGGCATCTGGAAGCGCGTCGGTCCTGATGAGGGAGCATCCGACGCCCGCTGATCTATCTGGGTCATCAGAAGGAAGGAGCTGCTGAAAATGCGGTGATCTGGGTGGAAACACGGCGCGCTTTGCCCCTTCGAAGCGAAGCGGATATCTTCTACAGGTTGTTTAACCGTCTCCCGGAGTCCAGATGGAGATGCTACTGCTTTATTTGATGGTTGCTGTCATGGCGTTAAAGGCCCAGAAGATCCAAGTATGCCCCAAGCGCTGCATTTGCCAGGTTTTGTCCcccaatctggcaaccctgTGTGATAAAAAGGGGCTGCTGTTTGTCCCCCCGAACATCGACAGACGCACCGTGGAGCTCCGACTGGGCGACAACTTCATCACGGGCATCAAGCGGAAGGATTTCGCCAACATGACCAAACTGGTGGACCTGACGCTCTCCAGGAACACGATAGGATCGGTCACGCCTCACGCGTTCAACGACCTGGAGAACCTCCGCGCCCTTCACCTGGACAGCAACCGCCTGACCCACATAACCAACGACACGTTCAGCGGCATGTCCAAGCTGCACCACCTCATTCTCAACAACAACCAGCTCACGCACATCCACATCGGAGCGTTCAACGACCTCCTGGCGCTCGAGGAGCTGGATTTGTCCTACAACAACCTGGAGAGCGTGCCGTGGATCGCCATCCAGCTCATGAGCAACCTGCACACCTTGAACCTCGACCACAACATGATCAACTACATCCCCGAAGGAACCTTCTCCGGCCTCCAGAAGCTCAAGCGCCTGGATGTCACGTCCAATAAGCTCCACAAGCTCCCGCCGGATCCTGTGTTCCAGCGCGCCGGGGTTTTAGCCACGTCCGGCGTCCTGGGTCCGTCGTCTTTCGCGCTGAGCTTCGGTGGAAACCCGCTGCACTGTAACTGCGAGCTGCTCTGGCTTCGGCGGCTGCGGCGCGAGGACGACCTGGAGACCTGCGCGGCTCCGCAGCACCTCGCCGGACGCTACTTCTGGACCGTATCCGAGGAGGAGTTCCTCTGCGAGCCGCCGCTCATCACCAGACACTCTCAGGAGACCCGGGCCCTCGAGGGACAGCAGGTGTCCCTGCGCTGCAAAGCTCGAGGCGACCCGGACCCCGTCATCCACTGGATCGCTCCGGACGGGAAGCTGGTGTTCAACTCCAGCCGCACCGTCCTCCACTCGGACGGGACCCTGGACATCCTGATCAGCACGGTCAAGGACTCTGGGTCGTTCACTTGTGTCGCTTCCAACCCGTCCGGAGAAGCCCAGCAGACCGTAGACCTGCTCATCACCAAGCTTCCCCATTTCACCAACGACACCAGCATGGTCCAGGAGCCGGATCCGGGGTCGTCCGACATCGCCACTTCCGCCAAGACGGGTGGAGACGGGGGCTCCTCGATGGGCAACAAGGGTGGACAGGAGAAGAGAGTCCTGATCTCCGAGATCACCTCGTCCACGGCTCTGGTCAAGTTCAACTTTCAGAGGAATATTCCAGGGATTCGTATGTTCCAGGTCCAGTACAACGGCACTTACGACGACTCGTTAGTATACAGAATGATCCCTCCGACCAGTAAAAGCATCACGGTCAACAACCTGGCGGCGGGGACCACGTACGATCTGTGCGTTCTGGCGATCTACGACGACGCTCTGACGGCGCTCACGGCGACCCGAGTCGTGGGCTGCGTTCACTTCTCCACCGAGCCGCAGTACCTCCGCTGTCACTTCATGCAGTCGCAGTTCCTCGGCGGCACCATCGTGGTCATCATCGGCGGCGTGATCGTGGCGTCCGTGCTGGCCTTCATCATCTTCCTCATCGTGCGCTACCGGGTGTGTCAGCAGGAGGGCGCCGATAAGGGCCTGGAGCTGGGAGACGTGCGCTCGCTGTCCGAGCATCAGGTCTGTGGAATCATCAAGTCCATGTCGAAGCAGGTTCTGGGTCCGGACGCGTGCCGGAAGGTGTCTCCTCAGAGCGAATCCGTCTCATCCCGGGCGTCCAAACCGGACTGTACGGTCACCACGTCCTCCGCTAGCCACAGCTGGCACCCGGCGTCTCCCAACCCCGTGCGTCCGGCGCGCACCGACACGCAGGTCGACGTCGAGCCGGACAACTCCAACAGGAACAACTCGGCCAAGGTGCGGCCGGCCGGCGCGTACTCCACGATAGTGACGCCGGCGTCGCGCAGAGCCCAGCTCCAGAGCCTCCACAGCTACCAGACCGTCCCGGCGGGCTGCGCTCGCGTCAGTCGGCGTCACTCGCTCCACGTGAACTCCTGCAAACAGCCGGCGTACGGCAGCTACCCGCAGCCGCTGCGCTCCAAACGCAGCCTGTCCATGAGCGGCGGAGATATTCCCCAGATGGACGCGGGCCAGATTCGTGACGGGAGATCCTCGCTGTCCCAGTCCGAGTGGGTTCTGGAGAGCACGTTATAATGGAGGATTTTGCACTTCACTTCCGTCTGGTTTTTAATAGCGTTCCAGGCCACCGTACGTGTGTTAGAACCTCGGACAGTCAAGAGAGGACGATGttttttaagcacaaattaaataCCGTTTCCTGCATATAGTACAACAATACTACGACTTgtatatttctttgttttatggGATAATACACAGACACTGCATATGTTAcgttgtgtaaaataaaatgtgaaaacga

Function

symbol description
lrfn5b Is expressed in central nervous system and cranial ganglion. Orthologous to human LRFN5 (leucine rich repeat and fibronectin type III domain containing 5).

NR:

description
PREDICTED: leucine-rich repeat and fibronectin type-III domain-containing protein 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220357.1 True 3146 mRNA 0.57 5 26036394 26049767

Neighbor

gene id symbol gene type direction distance location
magl NA coding downstream 59566 25963983 ~ 25976828 (-)
LOC122324391 LOC107712205,LOC107564326,LOC107659794 coding downstream 76692 25944134 ~ 25959702 (-)
pak5 pak5,LOC107659820,LOC107731598 coding downstream 101322 25888169 ~ 25935072 (-)
LOC122325519 plcb1,LOC107663155,LOC108423552,LOC103033987,LOC107678738,LOC107728323 coding downstream 260231 25754500 ~ 25776163 (-)
trnas-gcu_30 NA coding downstream 402451 25633860 ~ 25633943 (-)
znf410 LOC107659809,LOC107712212,LOC107550151 coding upstream 22638 26072405 ~ 26079546 (-)
cipcb NA coding upstream 33322 26083089 ~ 26087970 (-)
LOC122324579 LOC107756053,LOC107659807,LOC107756058,LOC107659806 coding upstream 51566 26101333 ~ 26103223 (-)
LOC122324575 LOC107659807,LOC107756058,LOC107659806 coding upstream 61709 26111476 ~ 26113724 (-)
LOC122324578 LOC107659807,LOC107659806,LOC107756058 coding upstream 73586 26123353 ~ 26125448 (-)
G142245 NA non-coding downstream 3196 26017371 ~ 26033198 (-)
G142261 NA non-coding downstream 24146 26010650 ~ 26012248 (-)
G142260 NA non-coding downstream 26006 26006269 ~ 26010388 (-)
G142201 plcb4,LOC107557901,LOC106608066,LOC107659823,LOC107564330 non-coding downstream 171315 25838372 ~ 25865079 (-)
G142015 NA non-coding downstream 439582 25474206 ~ 25596812 (-)
G142273 LOC107756044,LOC107737847,LOC107556799,LOC107567391,LOC107567392,LOC107713860 non-coding upstream 100124 26149891 ~ 26174879 (-)
G142282 NA non-coding upstream 140296 26190063 ~ 26191918 (-)
G142280 NA non-coding upstream 180539 26230306 ~ 26231483 (-)
G142297 NA non-coding upstream 218145 26267912 ~ 26268125 (-)
G142299 NA non-coding upstream 219870 26269637 ~ 26270044 (-)
LOC122324601 slc25a29,LOC107678310,LOC107557018,LOC107728117,LOC107564594,LOC106608124 other downstream 282386 25747667 ~ 25754008 (-)
G142058 NA other downstream 386301 25648492 ~ 25650093 (-)
mettl24 LOC107738893 other downstream 627619 25294844 ~ 25408775 (-)
wasf1 wasf1,LOC107661360,LOC107556997,LOC107564591,LOC107739187,LOC107667835 other downstream 658978 25326508 ~ 25377416 (-)
rhpn1 rhpn1,LOC107704026,LOC107669421 other downstream 1184615 24838652 ~ 24851779 (-)
LOC122324466 samd15 other upstream 1062 26050829 ~ 26054469 (-)
pgfa LOC107712199,LOC107704385,LOC107564316,LOC107659813,LOC107575298 other upstream 38648 26088415 ~ 26096971 (-)
G142281 NA other upstream 135893 26185660 ~ 26187919 (-)
G142278 NA other upstream 182257 26232024 ~ 26234245 (-)
rps29 NA other upstream 433554 26483321 ~ 26560387 (-)

Expression


Co-expression Network