CI01000001_11906787_11948732 (PIK3CD)


Basic Information

Item Value
gene id CI01000001_11906787_11948732
gene name PIK3CD
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11906774 ~ 11949296 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_11906787_11948732.mRNA
ATGAGCCTCAAAAATAATATAACTTAAATTTGAGTCTCATATGCTGCATATTTAAATATTTTGTAATGCAGTATATTTATGCTGCTTCTCTTTTCACAGTATATTCATTGTATTTCTTGAGGTATAGTGTTACAATAATTTGATAATTGAAGTTGTAGTGATCGTAGAAATAATTCCGTCCCATTAGATTTTACTTATTTAAAATTATTCTGTTATTTACTCTTTTACCTACGCATTGGATTGCTACTACTAACCGTGATAATGTGATATTAAACATTATATCTATTATATAATATATATTTAGTGAGCATGTGCTACACGTTTACAAGCAAAGTGTCTTAATAATTATTTATTATGCAGCATATGTTACATGCTTTCTCTCTCTTCTCACTGAATATTAATTAAGTATCTTTGGGTCACTCCCTGCCTCTGTGCAACTGGTTCAGTGGGTTGTAACAGCTAGTAAACATTTCATGCATGTTCAGTTTTTTTCTGACTTGATCTGTGATAAAGTGCCTATCTGTGTTCAGCAGTGGGGTCAGCTGTAGATGAGTTTCCTGCACCATGCCGCCGGGGGTCTACGGCATGCAGGATGTGTGGGAGAGGGAGGGTCGGCAACAGGTCAACATGGAGTTCCTCCTCCCCACGGGGATCTACCTCAACTTTCCCGTAGCATGCAGTGACACCATTAGTGCCATCAAGAGGATGGTGTGGAAGAATGCCAAGAACGAGCCTCTGTTCAGTGCCCTGAGTGACCCGGACGCCTACGTCTTTACCTGCATCAACATGACCGCAGAGCGGGAGGAGCTGGAAGACGAGCAGCGTCGCCTGTGTGACGTTCGGCCGTTCATGCCGATTCTCAGGCTGGTGGCCCGGGAAGGAGACCGAGTGGAGAAGCTCATCACCACCCAGATCAGTCTGCTTATAGGGAAAGGTCATCATGAATTTGACTCCCAAAAGAACCACGAGGTGAATGAATTCCGAACGAAAATGCGGACATTTTGTGAAGAGCGTGCTCAGGTGCGCCAGATGTTACCGTGGTATCAGTGGATGGAGTACAACTTCCCATGTGACTTGGAGCCGTGCTCTATAGTGGCACAATCTGGGAAATCACGCACTGTCAAAAAGATCCTTGTCAATGTGAAGTTTGAGGGCAGTGAGGAGAGCTTCGTTCTCCAGCAAGATCCACAGGACCTGCCGATGGTTCTGAAACGGAACGCCCTGAGAAAGAAGTCCACCGTGTTCCGATCGGCAAAGCAGGAGAAGCCAGAGGACTACACTCTGCAGGTTAATGGGAGAATGGAGTTCATTTATGGGACATATCCACTCTTCCAGTTTAAATATATTTTCACGTGTTTGCATGGAGGTCTTACCCCACAACTGACTGTGGTGCATCATTCAGCCATCATCAAGTACCAGGAGGAACAGGGTGGCCTCAGTAACCAGGTGTCCAGAAGCCGCGCCCAGTCCAAACCGCCCCCGCTGCCTCTGAAAAGGCAAAACACATCTTCGCTGTGGCATATCCAGGAGCCTTTCTATATATACCTTCTACAGGGTAGCCGAGTGAATGCGGATGAGGGCATGAAGCTTGTAGTTCAGGCTGGCCTCTTCCATGGCAGCGAGCTCCTGTGCAAAGTGGTGACCAGTAATGAGGTCAGTGTTTGCTCTGAACCTGTATGGGACCAGAAATTAGTGTTCGACATCAACGTGAGTGACCTGCCTCGCATGAGCCGCCTCTGCTTTGCCCTCTATGGCGTCATCGAGAAGACCAAGAAGCGGCCTACCAAGAAGAAAAACAAAAGAGCGTGTTACTTCTCTTTCAGCGAACTAGAGAAGAAGTCCACATGGGACTGCCCATTAGCCTGGGTTAACACAATGGTGTTTGACTACAAGGACCAGCTGAAGACTGGAGAATTTTCCCTGTCCACATGGCCATCGGTCCCAGATGATAAAGGTGATTTGTTGAATCCTATGGGCACTGTGGAGAAAAATCCAAACATTGACAGCACAGCTGGTCTGCTGGTTCGCTTTCCCAACATCAGACCACACCCCTTGTATTATCCTCCAATCGAAAAGCTGAACGAACTGGGTCTGAATGGTGAAAAGGTTGTTGCAACAAAAGAAGAGCACCTGAAACTGAGAGAGATTGTAGACAATAAAAACTTCACAGAGATCTTTGAGGACGAGAAGGAGCTTCTGTGGAAGTTGCGAGGAGAGGTGAGGCAGCGATACCCGGAGAGCCTCTCCAAACTCCTCCTCGTCACTAAGTGGAACAAACACGAGGACGTGGCTCAGATGTTTGGTTTGTTACGGAAATGGCCAGAATTGCCCGCTCTACATGCTCTAGAACTTCTAGACTACAGTTTCCCTGACCCTCATGTCCGCTCCTTCACCATCCGCTGCCTCAGGAAGTTGAGTGATGATGAGCTCTTTCAGTACCTCTTGCAACTGGTTCAGGTTCTGAAGTATGAATCCTACCTAGATTGCGACTTGACCTGTTTCTTGCTGGAGAGAGCCCTGGCCAACAAGAAAATAGGTCACTTCTTGTTTTGGCACCTCAGGTCAGAAATGCATGTTCCCTCAGTCAGCTTGAGATTTGGACTTATTCTGGAGGCATACTGTCGCGGGTGCATCTATCACATTAAGATCTTGATGAAGCAGAATGAGGCTCTGAATAAGATGAAGGCTCTCAATGACTTTGTGAAATCAGGCTGTCAGAAGGCGACCAGGATACAGACTACAGAGGACATGAAAGTGTGCATCAAACAGGACACGTACTTAGAAGCACTCTCTGACGTTGTTTCTCCTCTCAACCCAAGCATCATGCTGTGTGAACTCTGTGCTGACAAGTGTAAGTTCATGGACTCAAAAATGAAACCTCTGTGGCTGATGTACAAGGACAAATATGACACTGTAGGCATTATCTTCAAGAATGGAGATGATCTGAGGCAGGATATGCTAACCCTTCAGATGATTCAGCTAATGGATGTTTTATGGAAAACGGAAGGTCTTGACCTCAGAATGCTGCCCTACGGATGCCTGTCAACCGGGAATAAAACGGGTCTCATCGAAGTGGTGAAAAACTCGGACACTATTGCAAACATCCAGAGAAACAACAGCAACAGTGCAGCCACCGCTGCATTCAACAAGGACGCTCTTCTCAACTGGCTCAAATCCAAAAACCCAGGAGAAAAACTGGATCAAGCCATTGAGGAATTCACCCTCTCCTGTGCAGGCTACTGTGTAGCCACATATGTTCTGGGAATAGGGGATCGTCACAGTGACAATATCATGATCAGGGAAACGGGTCAGTTATTCCACATAGATTTTGGGCACTTTTTGGGGAACTTCAAGAGCAAATTTGGGATCAACAGGGAACGTGTGCCTTTCATTCTGACATACGACTTCGTCCATGTAATTCAGGAGGGACGGACCAATAATAGTGAGAAATTTGAACGGTTTCGTGAGTGCTGCGAACAAGCCTATAAGATTCTTTGCCGGAATGGGACTCTTTTTGTGAATCTTTTTGCCTTGATGAAAGCTGCAGGACTTCCTGAACTCAGTTCTTCCAAAGACATCCAGTATTTAAAGGACTCTTTGGCACTGGGGAAATCCGAGGAGGAAGCACTGAAGAACTTTAAAGTGAAATTTAATGAAGCTCTAAGAGAGAGCTGGAAGACCAAGGAACTGATTCAGCAGCGGCGCGTTTACGCTCTTGAGTCACTCCAGCGCTGCCGACTGTCGGGATGTGACCCCGGAACAGGACGCCTCCTTATACACAACACAGCTCTCAAATACAACAAAAACGACAGAATCCTGGACCAGGAGAGCAGTGCGTCAGGAGCAGGGGGGATGAACCGAGAGGAAGCCCCTGGCAAGTCTCCTGAGGAGATGTACATCCAGCAGAAGGTGCGGGTGCTGCTCATGCTCAAGAAAATGGGATCAAATCTGACACCAAACGAGGAAGCTTTTCTGCGGAATTATGCAGGCGTGGTGCATAGCCAGATGAGTCAGTTGCCACAGCACCCTATTGACCAGGACGAGGGCCATCAGGAATATGTAAGGAGAGCTGTGCCAACATTAGCCGTTTCTATTAGGAGAAACTATGACATCTCATTCTCTGGCATAAGATCTGTGTGAACCCTTAAATAAA

Function

symbol description
pik3cd Predicted to enable 1-phosphatidylinositol-3-kinase activity and 1-phosphatidylinositol-4-phosphate 3-kinase activity. Acts upstream of or within regulation of collateral sprouting in absence of injury. Predicted to be part of phosphatidylinositol 3-kinase complex. Predicted to be active in cytoplasm and plasma membrane. Is expressed in central nervous system; cranial ganglion; and ventral wall of dorsal aorta. Human ortholog(s) of this gene implicated in colorectal cancer; endometrial cancer; and immunodeficiency 14. Orthologous to human PIK3CD (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta).

GO:

id name namespace
GO:0005942 phosphatidylinositol 3-kinase complex cellular_component

KEGG:

id description
K00922 PIK3CA_B_D; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha/beta/delta

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_11906787_11948732.mRNA False 4153 mRNA 0.47 27 11906774 11949296

Neighbor

gene id symbol gene type direction distance location
CI01000001_11822308_11849165 CLSTN1 coding downstream 57609 11822018 ~ 11849165 (-)
CI01000001_11802690_11807444 NMNAT1 coding downstream 99330 11802565 ~ 11807444 (-)
CI01000001_11798501_11800359 RBP7A coding downstream 105178 11797857 ~ 11801596 (-)
CI01000001_11768247_11795338 UBE4B coding downstream 111436 11768072 ~ 11795338 (-)
CI01000001_11715436_11736738 KIF1B coding downstream 170036 11715112 ~ 11736738 (-)
CI01000001_11953793_11954834 FOXL2 coding upstream 4256 11953552 ~ 11955605 (-)
CI01000001_11957291_11972213 TMEM201 coding upstream 7296 11956592 ~ 11972549 (-)
CI01000001_11973849_11984738 S2533, SLC25A33 coding upstream 23877 11973173 ~ 11985134 (-)
CI01000001_12064801_12077571 NA coding upstream 115505 12064801 ~ 12077571 (-)
CI01000001_12091751_12092416 NA coding upstream 142334 12091630 ~ 12092416 (-)
G20588 NA non-coding downstream 17649 11888512 ~ 11889125 (-)
G20501 NA non-coding downstream 72893 11833608 ~ 11833881 (-)
G20496 NA non-coding downstream 225021 11681260 ~ 11681753 (-)
G20494 NA non-coding downstream 242950 11663575 ~ 11663824 (-)
CI01000001_11385404_11386042 NA non-coding downstream 519437 11383448 ~ 11388934 (-)
G20593 NA non-coding upstream 40887 11990183 ~ 11991216 (-)
G20596 NA non-coding upstream 42376 11991672 ~ 11991913 (-)
G20599 NA non-coding upstream 56524 12005820 ~ 12006022 (-)
G20528 NA non-coding upstream 100282 12049578 ~ 12051816 (-)
G20559 NA non-coding upstream 104770 12054066 ~ 12055595 (-)
G20315 NA other downstream 785944 11116755 ~ 11120830 (-)
G20319 NA other downstream 792027 11110837 ~ 11114747 (-)
G20230 NA other downstream 877997 11022127 ~ 11028777 (-)
CI01000001_10862471_10864514 NA other downstream 1041854 10862225 ~ 10865770 (-)
G20136 NA other downstream 1366924 10539027 ~ 10539850 (-)
CI01000001_12878462_12899012 NA other upstream 924102 12878365 ~ 12899469 (-)
CI01000001_12921289_12924608 NA other upstream 971303 12920599 ~ 12925496 (-)
G20555 NA other upstream 1392693 13341989 ~ 13348146 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022442 pik3cd coding NC_007134.7 CM002907.2 29756603 ~ 29812667 (-)