| Item | Value |
|---|---|
| gene id | G20230 |
| gene name | NA |
| gene type | misc |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 11022127 ~ 11028777 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: mitogen-activated protein kinase kinase kinase 14-like |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU22729 | False | 2894 | TUCP | 0.35 | 5 | 11022127 | 11028777 |
| TU22728 | False | 2710 | lncRNA | 0.41 | 4 | 11024550 | 11028777 |
| TU22730 | False | 2895 | lncRNA | 0.42 | 3 | 11024550 | 11028777 |
| TU22727 | True | 2739 | lncRNA | 0.48 | 2 | 11025874 | 11028777 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000001_11004027_11004884 | NEUROD4 | coding | downstream | 18917 | 11003614 ~ 11005633 (-) |
| CI01000001_10983526_10986681 | NA | coding | downstream | 37639 | 10982183 ~ 10986911 (-) |
| CI01000001_10896443_10925951 | ZNF385A | coding | downstream | 98599 | 10896208 ~ 10925951 (-) |
| CI01000001_10862471_10864514 | NA | coding | downstream | 158780 | 10862225 ~ 10865770 (-) |
| CI01000001_10822800_10843434 | NA | coding | downstream | 181116 | 10822680 ~ 10843434 (-) |
| CI01000001_11034064_11048961 | C1QL4.L, C1QL4, C1QL4A, C1QL4B | coding | upstream | 5086 | 11033863 ~ 11048961 (-) |
| CI01000001_11089521_11092848 | NA | coding | upstream | 60643 | 11089420 ~ 11093631 (-) |
| CI01000001_11210296_11213607 | NA | coding | upstream | 181447 | 11210224 ~ 11213607 (-) |
| CI01000001_11288035_11293399 | NA | coding | upstream | 259251 | 11288028 ~ 11294083 (-) |
| CI01000001_11385404_11386042 | NA | coding | upstream | 354805 | 11383448 ~ 11388934 (-) |
| G20292 | NA | non-coding | downstream | 31552 | 10989294 ~ 10992998 (-) |
| G20247 | NA | non-coding | downstream | 96145 | 10920474 ~ 10928405 (-) |
| G20268 | NA | non-coding | downstream | 150286 | 10873956 ~ 10874264 (-) |
| G20237 | NA | non-coding | downstream | 190382 | 10822047 ~ 10834168 (-) |
| G20180 | NA | non-coding | downstream | 243532 | 10779120 ~ 10781018 (-) |
| G20322 | NA | non-coding | upstream | 70777 | 11099554 ~ 11101587 (-) |
| G20341 | NA | non-coding | upstream | 82829 | 11111606 ~ 11182833 (-) |
| G20315 | NA | non-coding | upstream | 87978 | 11116755 ~ 11120830 (-) |
| G20317 | NA | non-coding | upstream | 94866 | 11123643 ~ 11124829 (-) |
| G20316 | NA | non-coding | upstream | 101376 | 11130153 ~ 11131056 (-) |
| G20136 | NA | other | downstream | 484700 | 10539027 ~ 10539850 (-) |
| CI01000001_09804494_09811219 | NA | other | downstream | 1203654 | 9804429 ~ 9811219 (-) |
| G18223 | NA | other | downstream | 3096033 | 7926104 ~ 7928517 (-) |
| G18023 | NA | other | downstream | 3267030 | 7756501 ~ 7757520 (-) |
| G20319 | NA | other | upstream | 82060 | 11110837 ~ 11114747 (-) |
| CI01000001_12878462_12899012 | NA | other | upstream | 1844621 | 12878365 ~ 12899469 (-) |
| CI01000001_12921289_12924608 | NA | other | upstream | 1891822 | 12920599 ~ 12925496 (-) |
| G20555 | NA | other | upstream | 2313212 | 13341989 ~ 13348146 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| eurasian perch (Perca fluviatilis) | G38834 | NA | unknown | NC_053115.1 | CM020912.1 | 15645511 ~ 15647851 (+) |
| tiger barb (Puntius tetrazona) | slc25a15b | slc25a15b,LOC107744499,LOC107687678,LOC107599942,LOC107726376,LOC107672737 | misc | NC_056703.1 | CM032072.1 | 10960311 ~ 10969118 (-) |