CI01000001_11210296_11213607


Basic Information

Item Value
gene id CI01000001_11210296_11213607
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11210224 ~ 11213607 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_11210296_11213607.mRNA
ATGTACAAGGTTGATTTACCAGTGGATGAGTCTGTGCAGCAGGCGGTGGAGCGGCGTCGGGCCGCAGAGGCTGAGCGCAAGAGCCGAATATTCAACACCAGAAACCGAGTGATCGGCGTGGACCTGCGCGCGCTTCACAAACAGCAGGAGGAGAAACGGGAACGACTGGAGATGGAGAAGCAGCGAGACATGGCTCATGATCTCTTGCGCTTATCTCTGGATGAAACGGCACTGCAACAGAGAAAAGAGGAAGAGGAGCTGCGAAGAGAGCTGGCGCTGGACTTGGTGCAGTATCGAGCGATACATCAACGTGCTGAGGACAGCCGTGATGCAGATATCAATTATGACCGACAGGAGGCGCCAGATGCCAGCATTTCTGCATTGGGCCCAGCCAGTATGCAAGTGTTTTTGGGAGAAGGAATTAATGAGAATGAAAAGAAGAGAGCTCAGATGGAGATGAACGAAAGAAACCTGAGAGCTCAAAGGGAAGAGAGAGAGAAACAAGAAAGGGAACAGAAAAACAAAGAGCTGCTGACCAACAGGGAGTTGGTGGAAAAAGACCTCAGGGCAGTGCAGCTGAATGCCCTGGAGGAGGAGTGCAAAAGAGTGGCCCGCATTTCACTCAGTCATTACCATCAAGCTCAGGCGGAGGAGAGGATGGAGAAGGAGCGACAAGAGAGATTGAAGAGAGAGGGAGAGGAGCTGGCAGAGGTACGGTACATAGTGACCTCTGACCTCCTGACAGAACGACCGGAGGCTGCAAAGAGAATAACAGCAGAGGGTCCACGAGTCCTGACCGACCGCTGGAAGGGCATGACCCCACAGCAGATCAGTGATATCCACAGAAAGAGAGAGGAACAGTGCTTTGAGAAAGAGAGACTGAGAGAGATGGAGAGGCAGAGAGATCTGGCCTGGGATTACCATCTGACAGAACAGGTCAGACAGCAGGAGAGAGAGGAGACGAGAGACAAGGAGCTGCAGAGAGAGAGGAGAGTTCAGCTCGATAAATACAATCAACAGCTGGCACGAGAGCAGCAGGCGCAGTGAGTGCCACATTCATAAAAACAAAACAAAAAACACAGCAGGACACAAGCAGAATGAATACAGCTGAAAATTAAA

Function

NR:

description
Zgc:158280

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_11210296_11213607.mRNA True 1119 mRNA 0.51 6 11210224 11213607

Neighbor

gene id symbol gene type direction distance location
CI01000001_11089521_11092848 NA coding downstream 116593 11089420 ~ 11093631 (-)
CI01000001_11034064_11048961 C1QL4.L, C1QL4, C1QL4A, C1QL4B coding downstream 161263 11033863 ~ 11048961 (-)
CI01000001_11004027_11004884 NEUROD4 coding downstream 204591 11003614 ~ 11005633 (-)
CI01000001_10983526_10986681 NA coding downstream 223313 10982183 ~ 10986911 (-)
CI01000001_10896443_10925951 ZNF385A coding downstream 284273 10896208 ~ 10925951 (-)
CI01000001_11288035_11293399 NA coding upstream 74421 11288028 ~ 11294083 (-)
CI01000001_11385404_11386042 NA coding upstream 169975 11383448 ~ 11388934 (-)
CI01000001_11397805_11428592 CASZ1 coding upstream 183789 11397396 ~ 11428663 (-)
CI01000001_11446246_11449035 NA coding upstream 232279 11445886 ~ 11449066 (-)
CI01000001_11472071_11477723 NA coding upstream 258363 11471970 ~ 11477774 (-)
G20351 NA non-coding downstream 23844 11148553 ~ 11186380 (-)
G20341 NA non-coding downstream 27391 11111606 ~ 11182833 (-)
G20316 NA non-coding downstream 79168 11130153 ~ 11131056 (-)
G20317 NA non-coding downstream 85395 11123643 ~ 11124829 (-)
G20315 NA non-coding downstream 92778 11116755 ~ 11120830 (-)
G20378 NA non-coding upstream 3414 11217021 ~ 11217389 (-)
G20385 NA non-coding upstream 10041 11223648 ~ 11226509 (-)
G20276 NA non-coding upstream 53980 11267587 ~ 11283351 (-)
G20494 NA non-coding upstream 449968 11663575 ~ 11663824 (-)
G20319 NA other downstream 95477 11110837 ~ 11114747 (-)
G20230 NA other downstream 181447 11022127 ~ 11028777 (-)
CI01000001_10862471_10864514 NA other downstream 345304 10862225 ~ 10865770 (-)
G20136 NA other downstream 670374 10539027 ~ 10539850 (-)
CI01000001_12878462_12899012 NA other upstream 1659791 12878365 ~ 12899469 (-)
CI01000001_12921289_12924608 NA other upstream 1706992 12920599 ~ 12925496 (-)
G20555 NA other upstream 2128382 13341989 ~ 13348146 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022429 ribc1 coding NC_007134.7 CM002907.2 28685266 ~ 28692581 (-)