CI01000001_11004027_11004884 (NEUROD4)


Basic Information

Item Value
gene id CI01000001_11004027_11004884
gene name NEUROD4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11003614 ~ 11005633 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_11004027_11004884.mRNA
ACGAATGTTTATAATCATCACAATAGAATGTAACTTTAATCTAAATATTTCACTAAAAAGCGCGCGCTCTAGAGTTTTAAAGGAAATTTCATCAGCGCGGGAGTCCGACAGATTTCCATGACAAAATATTTAGAGACAATGCTGATGTATTTCAATCAAATCAAATTCAAAAATGTAGTCGTATTAGTGTGGCTTGGTGCTGTGTTTGTTGATTCCGGTTTACAGACTCCCCACAAATTAAATCCAAGCGCTTTATCTGTGGACTAAATCCAGTCGTGTCCCAGATTGGACAGCGTCTCCAAAATAACTGCGGAAATCAAAGGGTTTAAACAGAAAGTCCTTACCATTAGATGGAAGCATTAAAACTTAGAGAAGAAATGGAATTGTAGAGCTGTAAGCTACATAATAATCATCACAATAATCGTGCTCTCTCTATGATGAGGGTCTGAACTCGTGTGAGCACAATTCAAAAGTCATAGTCTGAACATCTAAAGGTGTAAACAAGATGAATGTTCTTACAAATATTTCTCCTGTGACCTCAGATCACAATGATGACCAAACCTTATGGAAAACCAGGGGATGTGACTGAGCTAGTCAGCTCTCTGGGATGGATGGAGGAAGACCTCAGCTCACAAGATGGTGATAGGACACCTGAGATAGGTCACTATGCGCTACACAGGAGCAATCGTGAACCTGTAGAGCTTGGCAGTGAGGATATGGAGGAAGAGGAGGAGGAGGAAGAGGAAGAAATGGGTCTCGATGGAGAAAAGGCACCCAAGCGAAGAGGTCCTAAAAAGAAGAAAATGACCAAAGCCAGACAAGAACGTTTCCGTGCCCGCCGCGTCAAGGCCAACGCAAGGGAACGCTCGCGCATGCACGGGCTGAACGATGCGCTGGACAACTTGCGGCGAGTCATGCCTTGTTACTCAAAGACCCAGAAGCTCTCCAAAATCGAGACCCTGCGGCTGGCCCGCAACTACATCTGGGCGCTTTCGGAGGTTCTGGAGAGCGGCCAGTCACCTGAGAGCCATGGTTTTGTGGAGATGCTTTGCAAGGGGCTTTCGCAACCTACCAGCAATCTCGTAGCCGGCTGCCTCCAACTTGGACCCTCAACTATGGTGCTCAACAAGCTGGATGAAAAGTGCGGGGTGCCAGGAGCAGGTGGTCCGCAGGGTCACCCCATTAGCTATCCCTCACCGGGACTTCCCAGTCCACCCTACGGCTCACTGGAGGCCTCACACTTGCTTCATCTGAAGGGTTTCAAGGGGGCAGCCTATGAGAACTCCTCACCCAACGAATGTAGCAGCGGCACGCCACCTTACGACGGCCCTCTTACGCCGCCACTCAGCATCAGCGGCAACTTCGCCCTCAAGCAGGAGCCGTCTCCTCATGAGGCTGAGAGGAACTTTACTCCTCACCCGACCCACGGCGCGCATTACATCTCCTCACACCCTTACCCGCCCACCTCCTTGGCCGGTCTTCCAGCTCCTCAGGGTCACCCTCTATTCCCAGCTTCCCGTTACGAGCTTCCTTTAGACATGGCTTTCGAGCCGTTCGCCCCTTCGCACATTGTGACATCACAGATGAGCAGCATTTACAGTGAATAAACAAATATGACCACCAGAGACGCTCAGCAATTCTGCCTCCTGCTCCTCAGTGTGCCTCCAGGGGCCCAGCACATTTAAGGAGACATTTTGCATGTATCCTGTCTGATCCCTTAAGAGACCGTAGCGGTCACTGAGAGAGAAACGCAACCTACCTGTGGCAATTGAAGTACTGAGAAAGAGATGCATATTTTTTTTGTTAATTTATTCTTGTTTTTGTCACGACTGAGTTTGTTACTATTTTAAATGTTATTTTTAATTGTTCTGGGATTTGTATTCTGTGTCCACCTGATGTTCTCCTCCTCAAACAGGACGGCTTTTTTGGAAACATGCCATCAAACAGGAGAGTAAGAACCTCAGTATCTTCGGCACTGTTCAACCACTAAACAAAATGAATGAAGGAAAAGGACAATAAA

Function

symbol description
neurod4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within nervous system development; neural plate morphogenesis; and olfactory placode development. Predicted to be active in nucleus. Is expressed in several structures, including head; nervous system; neural plate; neural tube; and trigeminal neural crest. Orthologous to human NEUROD4 (neuronal differentiation 4).

NR:

description
atonal-like protein 3

GO:

id name namespace
GO:0048666 neuron development biological_process

KEGG:

id description
K09079 NEUROD4, ATOH3, MATH3; neurogenic differentiation factor 4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_11004027_11004884.mRNA True 2020 mRNA 0.48 1 11003614 11005633

Neighbor

gene id symbol gene type direction distance location
CI01000001_10983526_10986681 NA coding downstream 16703 10982183 ~ 10986911 (-)
CI01000001_10896443_10925951 ZNF385A coding downstream 77663 10896208 ~ 10925951 (-)
CI01000001_10862471_10864514 NA coding downstream 137844 10862225 ~ 10865770 (-)
CI01000001_10822800_10843434 NA coding downstream 160180 10822680 ~ 10843434 (-)
CI01000001_10798413_10798703 NA coding downstream 204681 10798329 ~ 10798933 (-)
CI01000001_11034064_11048961 C1QL4.L, C1QL4, C1QL4A, C1QL4B coding upstream 28230 11033863 ~ 11048961 (-)
CI01000001_11089521_11092848 NA coding upstream 83787 11089420 ~ 11093631 (-)
CI01000001_11210296_11213607 NA coding upstream 204591 11210224 ~ 11213607 (-)
CI01000001_11288035_11293399 NA coding upstream 282395 11288028 ~ 11294083 (-)
CI01000001_11385404_11386042 NA coding upstream 377949 11383448 ~ 11388934 (-)
G20292 NA non-coding downstream 10616 10989294 ~ 10992998 (-)
G20247 NA non-coding downstream 75209 10920474 ~ 10928405 (-)
G20268 NA non-coding downstream 129350 10873956 ~ 10874264 (-)
G20237 NA non-coding downstream 169446 10822047 ~ 10834168 (-)
G20180 NA non-coding downstream 222596 10779120 ~ 10781018 (-)
G20230 NA non-coding upstream 18917 11022127 ~ 11028777 (-)
G20322 NA non-coding upstream 93921 11099554 ~ 11101587 (-)
G20341 NA non-coding upstream 105973 11111606 ~ 11182833 (-)
G20315 NA non-coding upstream 111122 11116755 ~ 11120830 (-)
G20317 NA non-coding upstream 118010 11123643 ~ 11124829 (-)
G20136 NA other downstream 463764 10539027 ~ 10539850 (-)
CI01000001_09804494_09811219 NA other downstream 1182718 9804429 ~ 9811219 (-)
G18223 NA other downstream 3075097 7926104 ~ 7928517 (-)
G18023 NA other downstream 3246094 7756501 ~ 7757520 (-)
G20319 NA other upstream 105204 11110837 ~ 11114747 (-)
CI01000001_12878462_12899012 NA other upstream 1867765 12878365 ~ 12899469 (-)
CI01000001_12921289_12924608 NA other upstream 1914966 12920599 ~ 12925496 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022425 neurod4 coding NC_007134.7 CM002907.2 28343988 ~ 28347039 (-)