G20276


Basic Information

Item Value
gene id G20276
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11267587 ~ 11283351 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU22784
TTCCTGCTAGAAATTATAGTCCCTGACATGTGATCAAGTGTTTGACAGTATGTATTTATATATTTGTTATATTTGTTTGGTACCCCAAAAGCAAATAAGTGTCAGTGTAGTTTATTTAGTTTCGTTTATTTATATAGCACTTTTAAAAACGGCAAGTGCCGACCAAAGTGCTGTACAAAACCAAGATTAATAAAACAAAAACAAATGTGTATGACTGAGACGTCACATGCAAAGCTGTCATGGTAAAAGTAATTAACAATAATTTGCCCAATGATAAATCCATATCAAATCAAAGTCAAACATTTGAACACTTTTACAACTGTTTCAACTGTTTTTTGACATGATTTCTTCAATCCACGGAAGGTAATTTTTCACTTTGGTATAAACCCCATTATACCCAGGCTGCGCGCAGCCATGACCCCATGACACAATACCGCCTATGAACCAGCTTTTACTCTGACTGTCCAAAAATGCGTAGGGTCCTCCACTGTCCCCCTGGCAGGAATCTTTTCCTCCCTCATCAACCCCAGCACATATCATGTTCTCTGTCACTACTAGTTTCCCTTTATCTGTCACTGTGGAGTCATATTTAGCCTTACAGGTCTCAAAATCAGTGACGGGTAAATGTACGTACTGGAGATTTTTGGAATGTAATGCAGGTCTGTTTGTATTCCACACACCCCACCCGGACACCTTCCCAACGTCATCAGTCTTCAAAACAAACCGCTCTTCCCTCCCAGGCAAACACACTGGCATGACGGCTTTACTGACAGGTACCTTATACTCCAGTTTAATCAGGGCAATGTCATGGTTGAAGTTAATGTTATCATGATGGTACTGAGGGTGAACAAAGATTTTCTGTGGAACGCCAACTACCGCCTCTTTGTCATGCTGTTTGACTACGCCCATCTTCAGCTGCAGCTCGGTAGTGTCTGAATAGCTTCTCAGGACATGAGCAGCAGTGAGGACCCAGTTGTCCGACACGAGAGAAGCGCCACCGATGAACCTGGTGCCCATTCGTATCATGACCTGCCAGGGAATCTCGTTCTTTTCTGCATTCTCCCCGCCAATCACCTTGGATAGTTTTTTCTCAGGCTGTCCACAAATGGGTGAACATATCTGGAGTATTTTTCTACCCAGGGCATCTCTCCAGAAGCCATCATGTGCACAGGTATAGACTCCATTTGTTCCAGCCTCCATTGTGTAGAATTCATCACAGGAATACTTGATCACAGATTTATATGTGGTTGTGGTGAATTTCACACTTGCATTATGCACTTCTACAGGATCTCCACAATTAACAATGATGCAGTTAGGCAGCGGTCCATTCCAAAATCCACCCTTCAGGCACGTGGCTTGATAAAAGGGCAAAGCTTCCTCCCCCAGAATTAATTCATAGCCCAGATCACATGTGACATTGAAAGTGTCTGTCATGATGTACTGAGACTGCTGCGGCTGGATACGTCCATGTTGAGGAGTCACAGGGTTTGGGCATGGCTGGGCTGTGCTGGTATACTTGATCTTCCAGCCTTTGTTTTTCCCAGAACCATCTGAACGGAAGGTCACATGCACTTTGTGAGTTCCTGTCTCTATTTTTCTTGGTGGGGTCCTGCCACAAAATGGGCCGTACTCCCTTCCACCTGCAGCGATCTTGAGGATGTCATAAGGGCAGTGGATTTCAGGATGAGTCTCCACATCAAACAGGTTCTGGAAGTCCAGGGTCACTTGGAAGCCTTCCATCAAACTGATAGTGTAATCACACTGGCTCATCTTGGGGTAAACACCTGGGTACTCTGGACTGCTCAGTTCGCCTGACCTCTGCTGAAACACCTGCCCACTACACTCAGCAGGGCAGTGTCTTTTATCAGCGTGAAGTTGGTATCCCAATCTGCAAGTGCAGTAAAAGCCCCCCACATAATTATGGCAATTATGGTCACACACAGGCTCTCCATCCACAGTGCTCAGGCACTCATCAATGTCTTCAGCAGAATAAAATGCCTGGAAGCCTGTGAAACGGTCCTCATTGGAGTAATCTGATCTGAAGAGCACTGACATGGTGTTGCTGGCAGAATAGATGACAGTGTTTTTGGGCGCATCACCATAATTTTTCTCTGCCTCGCCACAGAACCGGACCGTCTCATTCCCTTCTGAGAACACCTGAACATAGTCATATTCGCAGCGATGAGAAGGCTCCAGGCTAAAATAAGTGAAGTAGAGACGTAATCTGTGTCCTTTTGGTCCTGTGATATTCCACACCATACGTTGGTTGTTAGGATAGACGTTTGGGAAGTTTGGTGATGTGAAGCTCCCAAATAGTCCTTTCAGCTCTGAGCCAAAAGCTAATGGAAGCAGGGTGACGAAAGCCAAAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU22784 True 2370 lncRNA 0.45 10 11267587 11283351

Neighbor

gene id symbol gene type direction distance location
CI01000001_11210296_11213607 NA coding downstream 53980 11210224 ~ 11213607 (-)
CI01000001_11089521_11092848 NA coding downstream 173956 11089420 ~ 11093631 (-)
CI01000001_11034064_11048961 C1QL4.L, C1QL4, C1QL4A, C1QL4B coding downstream 218626 11033863 ~ 11048961 (-)
CI01000001_11004027_11004884 NEUROD4 coding downstream 261954 11003614 ~ 11005633 (-)
CI01000001_10983526_10986681 NA coding downstream 280676 10982183 ~ 10986911 (-)
CI01000001_11288035_11293399 NA coding upstream 4677 11288028 ~ 11294083 (-)
CI01000001_11385404_11386042 NA coding upstream 100231 11383448 ~ 11388934 (-)
CI01000001_11397805_11428592 CASZ1 coding upstream 114045 11397396 ~ 11428663 (-)
CI01000001_11446246_11449035 NA coding upstream 162535 11445886 ~ 11449066 (-)
CI01000001_11472071_11477723 NA coding upstream 188619 11471970 ~ 11477774 (-)
G20385 NA non-coding downstream 41078 11223648 ~ 11226509 (-)
G20378 NA non-coding downstream 50198 11217021 ~ 11217389 (-)
G20370 NA non-coding downstream 53144 11203902 ~ 11214443 (-)
G20351 NA non-coding downstream 81207 11148553 ~ 11186380 (-)
G20341 NA non-coding downstream 84754 11111606 ~ 11182833 (-)
G20494 NA non-coding upstream 380224 11663575 ~ 11663824 (-)
G20496 NA non-coding upstream 397909 11681260 ~ 11681753 (-)
G20501 NA non-coding upstream 550257 11833608 ~ 11833881 (-)
G20588 NA non-coding upstream 605161 11888512 ~ 11889125 (-)
G20315 NA other downstream 146757 11116755 ~ 11120830 (-)
G20319 NA other downstream 152840 11110837 ~ 11114747 (-)
G20230 NA other downstream 238810 11022127 ~ 11028777 (-)
CI01000001_10862471_10864514 NA other downstream 402667 10862225 ~ 10865770 (-)
G20136 NA other downstream 727737 10539027 ~ 10539850 (-)
CI01000001_12878462_12899012 NA other upstream 1590047 12878365 ~ 12899469 (-)
CI01000001_12921289_12924608 NA other upstream 1637248 12920599 ~ 12925496 (-)
G20555 NA other upstream 2058638 13341989 ~ 13348146 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location