CI01000001_11768247_11795338 (UBE4B)


Basic Information

Item Value
gene id CI01000001_11768247_11795338
gene name UBE4B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11768072 ~ 11795338 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_11768247_11795338.mRNA
ATTCGAAGAAGGCGGCTGGCCCGGTTAGCCGGAGGACAGACATCACAGCCCAGCACACCCCTCAGCACCCCTTTGACATCCCCACAGAGAGAGACTCCCCCAGGACCCTTGCCAGGGCCATCTGGGGCTTCATCGCAGCCTGTCCCACCAGCTCCATCTCACTCTCTGGGCCTAAATGCCCAAAATGTCACCCCTGCTACTTCTCCTATGGGGGCCTCTGCTGTCTTGTGTCCACTACCACACGTTATTCAGAGTTGCATGAAAAAGCTGTTCTAGCACAAGCCTGCTCTCTGTTGTATAGCTTCTTTCTGGAATGGGTTGCTTACCGCAGCCAGAGCAGCGAGGGCGTCAGTTCGCTCTCCAGCTCTCCATCTAACAGCCTGGAGACGCAGTCCCAATCCCTGTCCCGCTCTCAGAGCATGGACATTGACACAGCCTCCTGCGAGAAGAGTGCTAAAGTTATATTGTTTGACAATTGGGGATTTAAACTGCTACTTGAGCTAGATCTCATCTTTGTGGTCTTCAGCATGTCCCAAGTAGATGTGGACTCAGGAATTGAGAATATGGAGGTGGATGACAGTGATCGCAGAGAGAAAAGGAACCTGGCTGAAAAGGATTCTTCATCCAATCCTGACGTCTCTGAAGAGCAGGCTCTGCAGCTCATCTGTAAGATCTTGCGTGTTTCCTGGAAGGAACAGGACCGTGATGTCATCTTCCTCCCCTCACTTGCTGCTGAATTCCAGAAGAACCCTAGGGATGTTTACTCTGACTTCAAAGACCTGATCGGACAGATTTTAATGGAGGCTCTCATGATGTCCACCCGCTCGCGTGACTGTAACCCATTCGCCAGCTTGACTGCCACATCTCAGCCAATTACTGCTGCCAGATCCCCAGACCGTCACCTGACTCTCATCCCACCCTCCAGCCAGAGTGCCAGTCCCATGATGCCCTGTGCTGGTTCATTTGGTGCCAGCTCACTTTCCAGGCAAGTTCTTTACGATAGTAGCCCAAACCCACTTGCTCTGAGCTCTGCCAGAATGAGTGCTCCATCTGTCCCACCGGCTTCTGCAGCCGCCTTCCCGGTTCCCCCCAGTCCTCCGGCCTCTCGCCCTCCTGCCAGCCTTCCCTCTCCATCCGCCCCACTGCCCATCTCCCAGAGATACAGGCCCTACTCCCTTAACTCATCCATCCCCATAAGCCCAAGCCCCAGATCTACTCCATCTGGTACGCTTACGCCCCCTACAACGTCAGGTATATCCTCCAGCCCTTCCCCCAGACACCCTAACACCCAAACCTCCACACCTTTACCCCTCCTCCCCGGCTCCCCCAGCACTATGGCCAGACGGACTGCACTAGCTGCCCGGATGCCCTCTAGCCCTTTCTCCCTCCTCTTCTTCGCCCTGTCCGACTTACCTCAGGACAGCAGTGATGAAGAGCTGGAGGAAGAGGAAGAGGAGGATTTTTCAGGGGTTCAGTTTGGGTCCAGCCTGGGTGCGTCTGGAGGGGGGATGACTGGTGACTCAGGTAGTGACCGCTTTACCATAGAGTCCTGTAAAGAGACGGAGATGCTCAACTACCTCATCGAGCGTTTTGACAGTGTGGGAATGGAAGAGAGGAAGGCCCCAAAGATATGCAGCCAACCAGCTGTCAGTCAGCTGCTTAGCAACATTCGTTCCCAGTGCATTTCCCATGCTGCACTAGTGCTTCAAGGTGCCCTCACGCAGCCCAGGGCCCCTCTACAGCCCTCCCTGCTGGTTCCGTACATGCTGTGCCGGAACCTTCCGTACGGGTTCATCCAGGAGTTGGTGCGCATGACTCACCAGGAGGAGGAGGTGTTCAAACAGATCTTTGTTCCCATTCTTCAAGGGCTTGCTTTAGCTGTAAAAGAATGTTCTTTTGACAGTGACAACTTCAAGTTTCCTCTGATGGCTTTGGCTGAGCTCTGTGAAATCAAGTTCGGGAAGACTCACCCTGTATGCAATTTGATCACCTCTCTGCCATTGTGGTGTCCTGACCCTCTCAGTCCTGGGACAGGAAGAGAAATTCAAAGACTCTCCTTCCTCGGAGCATTCTTCAGTCTTTCTGTGTTTGCTGAGGATGACACTAAAGTGGGAGACAAGTACTTCTCTGGCCCTGCCATCACTATGGAGAACACCCGTGTGGTCAGCCAGTCACTGCAGCATTATCTGGAGTCTGCCAGGGGAGATCTGTTTAAAATCCTGCACAACATCTTATTGAATGGAGAGACAAGGGAAGCAGCTTTGAGCTACATGGCAGCTCTGGTGAATCGTAATGTGAAAAAGGCTCAGATGCAGACCGATGATAAGCTGGTGTCCACAGACGGCTTCATGATGAACTTCCTGTGGGTGCTGCAGCAACTCAGTATGAAGATCAAGCTGGATACGGTTGATTCTCTCTACATCTTCCACCCCAAGTGTCGGCTGAATCTCAGCCGAGAAGAGACCCGGCTCAATGCCACGATGGAGGACCTGAAGAGCTGGCTCGCTGAGCTGCATGAAGACCCGACCAAGTTCTCAGAGCCAAAGTTCCCTACAGAGTGCTTCTTCTTAACGCTACACGCACATCATTTGTCCATCCTCCCGTGCTGTCGGCGCTACATACGGAGACTGAGGGCCATCAGGGATCTGAACAGATACCCTATCATGTATGTGACGCTCTTTGTTGTCATGCTTTGTGAAAAAGCCCTTAATCTCTTTCTGATGAGACGGGCTAATCCTGTCCTGTCCCAGTGCCTCTTACAGAAGATCAGAACCACGGTGACCCCTGCTGTCGGCAGCCGAACTGTGGAGGAGCTAAAGAACAGTGAGAACCAGTGGAAGGAATCCCCGTTGGCTAATCGTCATCGGGAGATGCTGAAGAGATGTAAAACACAACTGAAGAAACTCGTGCGCTCTAAAGCCTGCGCAGACGCAGGGCTGCTGGACGAGAACCTGCTGCGCAGATGTCTTCAGTTCTTCAGTATGGTCATCCAGCTCATCTTGCGTATGGTGGAGCCTGCCTTCCCACAGTCAGTTCACTTAACATCTCTTCAGATACCGCTTACATTCTTTCAGCAAAAAATTCCCAAAAACTTTGCAGCACTGCCTGAGTTTTACATTGAAGATGTGGCTGAGTTCTTGCTTTTTATTGTGCAGTACTTTCCCCAGGTTCTCTATGAGCCATGCACTGAAGACATTGTGACCTTCCTGGTAGTCTTCCTTTGCAGTCAGAATTACATAAAGAACCCATACTTGATTGCCAAGCTGGTGGAGGTGCTCTTCGTTACCAACCCAGCGGTGCAGCCGCGCACTCAGCGTTTCTTTGAGATGATGGAGAGCCACCCACTGTCTGTCAATCAGCTTGTGCCCGCCCTCATGAAGTTCTACACAGATGTGGAGCACACTGGAGCCACAAGCGAGTTCTATGACAAGTTCACCATTCGTTATCACATCAGCACCATATTCAAAAGCCTGTGGCAAAACATTAACCACCAAGGCACCTTCCTGGAGGAGTTCAACTCCGGTAAACAGTTTGTGCGCTACATCAACATGCTAATTAACGATACAACTTTTCTGCTGGACGAGAGTTTGGAGTCTTTGAAACGCATCCATGAGATCCAGGAGGAGATGAAGAATAAAGAGCAATGGGACCAGCTGCCCAGGGAGCAGCAGCAGAGCCGTCAGTCCCAGCTGACTCAGGATGAGAGAGTATCACGATCCTACCTGGCTTTAGCCACAGAGACAGTGGATATGTTCCATATCCTCACCAAACAGGTCCAGAAGCCCTTCCTCAGGCCTGAACTGGGTCCTCGTCTGGCTGCCATGTTGAATTATAACCTGCAGCAGCTATGTGGGCCCAAATGTCGAGACTTGAAGGTGGAAAACCCAGAAAAATACGGTTTTGAGCCAAAGAAGCTCCTGGATCAGCTCACTGATATCTACCTGCAGCTGGACTGTGCCCGATTTGCTAAAGCCATTGCAGATGACCAGCGGTCATACAGCAGGGAGCTCTTTGAGGAGGTCATTTCCAAAATGAGAAAGGCGGGCATCAAATCCACCATTGCTATTGAGAAATTCAAACTTCTGTTGGAGAAGGTGGAGGAGATAGTAGCTCGCAATTCACAGTCTGAGATGGATTACAGCGACGCCCCGGATGAGTTTAAAGATCCGCTGATGGACACTCTTATGACTGATCCCGTGCAACTTCCATCTGGCAACATCATGGACCGATCCATCATTCTGCGACACCTCCTGAACTCTCCCACCGACCCCTTCAACAGACAGCCTCTCACAGAGAGCATGCTGGAACCAGTCCCAGAGCTGAAGGAGCGTATCCAGGCCTGGATGAGAGAGAAGCAGACTGGTCGCTTTTGAGTTTTCTCAGTGAGCCAAGCTTGCCCCTCAGTATAAATGTTTTTATCACGCTGGAAGTAAACTGAAGAGAAAGAGGAAAAAAAGATGACAGTACCCAAATTGTTTTTGCCTCCCTTTATCCTCTCTGTCGAGCCATGTCTGAAAGGCTCATGGTTCTAAATTGAAACATAATAAA

Function

symbol description
ube4b Predicted to enable ubiquitin-ubiquitin ligase activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent ERAD pathway. Predicted to act upstream of or within protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm and nucleus. Is expressed in female organism; heart; and skeletal muscle. Orthologous to human UBE4B (ubiquitination factor E4B).

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10597 UBE4B, UFD2; ubiquitin conjugation factor E4 B

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_11768247_11795338.mRNA True 4548 mRNA 0.51 31 11768072 11795338

Neighbor

gene id symbol gene type direction distance location
CI01000001_11715436_11736738 KIF1B coding downstream 31334 11715112 ~ 11736738 (-)
CI01000001_11685422_11713351 KIF1B coding downstream 54586 11684972 ~ 11713486 (-)
CI01000001_11677994_11680279 PGD coding downstream 87232 11677994 ~ 11680840 (-)
CI01000001_11665402_11666409 NA coding downstream 101123 11665119 ~ 11666949 (-)
CI01000001_11654628_11655345 NA coding downstream 112705 11654567 ~ 11655367 (-)
CI01000001_11798501_11800359 RBP7A coding upstream 2519 11797857 ~ 11801596 (-)
CI01000001_11802690_11807444 NMNAT1 coding upstream 7227 11802565 ~ 11807444 (-)
CI01000001_11822308_11849165 CLSTN1 coding upstream 26680 11822018 ~ 11849165 (-)
CI01000001_11906787_11948732 PIK3CD coding upstream 111436 11906774 ~ 11949296 (-)
CI01000001_11953793_11954834 FOXL2 coding upstream 158214 11953552 ~ 11955605 (-)
G20496 NA non-coding downstream 86319 11681260 ~ 11681753 (-)
G20494 NA non-coding downstream 104248 11663575 ~ 11663824 (-)
CI01000001_11385404_11386042 NA non-coding downstream 380735 11383448 ~ 11388934 (-)
G20276 NA non-coding downstream 484721 11267587 ~ 11283351 (-)
G20385 NA non-coding downstream 541563 11223648 ~ 11226509 (-)
G20501 NA non-coding upstream 38270 11833608 ~ 11833881 (-)
G20588 NA non-coding upstream 93174 11888512 ~ 11889125 (-)
G20593 NA non-coding upstream 194845 11990183 ~ 11991216 (-)
G20596 NA non-coding upstream 196334 11991672 ~ 11991913 (-)
G20315 NA other downstream 647242 11116755 ~ 11120830 (-)
G20319 NA other downstream 653325 11110837 ~ 11114747 (-)
G20230 NA other downstream 739295 11022127 ~ 11028777 (-)
CI01000001_10862471_10864514 NA other downstream 903152 10862225 ~ 10865770 (-)
G20136 NA other downstream 1228222 10539027 ~ 10539850 (-)
CI01000001_12878462_12899012 NA other upstream 1078060 12878365 ~ 12899469 (-)
CI01000001_12921289_12924608 NA other upstream 1125261 12920599 ~ 12925496 (-)
G20555 NA other upstream 1546651 13341989 ~ 13348146 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022437 ube4b coding NC_007134.7 CM002907.2 29507315 ~ 29553691 (-)
bowfin (Amia calva) AMCG00002275 ube4b,LOC107681967,LOC107570768 misc CM030136.1 CM030136.1 9757425 ~ 9801108 (-)