G150970


Basic Information

Item Value
gene id G150970
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 9025901 ~ 9029910 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU223424
GCATATCAAGCGGTTTATTTTCCTGCATGGAATGGTGAACACAAAAAGATGCCTAGATGCATTTATAATAGGGGCATCCTTTGGCTGTCTATGTCATTGTCTTCTGcctaaaactaattttaaaatgcataaaaacgctCTCTTCTTACCAACATCCTCAGAATTATCTAGATTTAGCTTCATCAACACTGATGCAACAAATAACCTTCAAAACATACAGCATACTTGTAACATCCATTTACAATGGGGTTTTCACCTCGGCATCCTACACTTTTCAAGTATAGGAGTACTTCTATACCATCGAAAGAAGAAATAAGTccttaaatacatacaaaaaggaaagcaaaaagcaaaaaaaataaaataaaataaaacaggaaacaggaagttttCAACTTAAATCCAGTTCCCCagaggacaaacaaaaccagttCTATTTATGTGGCCTtaatacaaacaatcagaaaattCACAACACTagtttttcctcatttaatCAATGTTACAAAAGTCCTGCATTATAAAATAGGGCAGCTTTAAAATCagtgtaattaataaaactatacaatatacaaacatCAAATCTCCCATACTCAGGTGCGTCCGCCCTATCTCTCGTATCTAATCGATTCGGTTTGTTTGCTTCTCCCGCGTCTTCTCCAACATTGtaccaaaaaactaaattacacacacaacacGAGAACAAAACAGACTGCCCAAACTATTGCttgaatttctttttctcttttttctttctttaaaaagggTGCAATTTTGTCATTATCTTACACACACAGCCAATCTCGCTGATTAGATGCCAGGCTGCTCTAAACAAggtttttgtgacaaaaaataTCCGTGCAATCATGTTTCCCTTCGCTCTTTTAAGCCctggaagcttttttttttttgtctttttttttttctcaattatcacaattgtcattattttatatttagtgcaGACGATTAAGAAAGTAATGCCCAACTCATTTCTAAAGGGTAGGCAAGaacaatgacaaaataataaatcacgctaaaaaaaaaaaaaaaaaagacTACATGAGTGCAAGCGAGTattgcatattaattttttcctcattattcATCTCTGGGAAcgcaaaaaaaagaacaggaagaccgaaaaaaaaaaaaaaaaaaaaaaagtagttgtcatttagaatttttttagcaacatcCATAAATATCAATACACTACTGTTAACTCAGAGAAAAAAGGGCACGATGACACAAAAGCCTTTGCGTGATGCATTTTCTCGGGTGGATGATTGACTTGCGACTGATTGAAGTGTAAACGATGGGGTTTTTGAAGCAACGGACGACCGAAAATGGCGATACGTAGTTAAATGGAGAGTAATACTGCGTATTATCAATTAGCACTAATTTCACTCTCTCCGAATGACTACACGTGGAAGGTGGGCTGGGAAAGTAAAAAGATAGTCTCCACATTGCAGCTTGTGCAATAACTCAGAACTAGACCATCGCTCAAGGCACATCGATGTGGAATTGTTCGTGCAGTTGGAAAAGGGATGATGAAGTGCGTACGTATGAAAATGATTGTTCTGACGGGAATAAAGGAGGAAGGGAGACTTTATAGAAATGACGACAAGCTAAGAAGAGTCAGAGAGATGTTTAGCTGGTTGATTGTGAGAACAGCAGTAAAaatacccttttttttttttaaaggaccaAACAAATACTTGATCGGCAAGTGCCCAATGTTGGGATTACAATATTTTTCACACTACTTTAACTCTACGTAATCTATGTAAAAATTTGTCACTAACACTAGAACATGcagattattttctttaatttttttttttttttactttactgaGCTTTGATCGACGGTGGATGAGACtgtaagtgtatatatttatatatatatatatatatttcgtACAGGAAACgaacaaaaactcaaaaaaaaacaatgacaaaaattgCATGCGAGGAAAGCTGGATCTTCACATTTTCGTTCGCCGCTTTCAAAAGCGTCCGCGAGGAAGTTAGTTCAGTATGTCGCCTCTTGCGTCGGCATTTAAACGGTCGATTTTTTCCGTTCGTGGTTTTGCGAACGGCTAATTTTCTTACGAGTTTCGTTATGTGCTAGGGTTAAAACGAAAATATTTGCTGTAGCGTTTtggaaattaactaaattgaTTGTTTTAACGTTGAGatttcttaaagggatatttgTTCTACAATGCTAACAATCGAtgaacgaacaaacaaacacataaaaaaaacaacaacagaaaaatcaATTACAGCTCCCCTTATTTCTCACAAGGCtatttgttctatttttctctttacgtgtttttttttcttttttgtaccCCGATATTTTAGAGTCCTGGAGGTGTGAATGGACTaggaagaaaaatatatatatatttatatatatacttttcaaCAATCGCTTCAACGATCTATCTTACAAAGATATTTAACAATCCAACATCTACCCAACAAAATTGCACTTTCCTCAATTCAGTATTCACGGTTAACCTTTTCTTGAAGTTTATGGAAGATCGAACCTTTACTCGGCCCTTGGCGTGCGACAGACCTTCCGCTGGGGTTTAGTAGAAAGAATCgcgatgattttttttttttgtacgaaaaacacaaaatatgaacatgCCTCCAAACGGGGAGGGAGATCTCCCGTTAGCATACCGTAAAATGACCTGATATCAAACATCACCGTTCATGACTTCTTCATCGCCTGCCccaaaatgacacaaaacaactgaaaaaaatgggTTTGGTTGAGTCCTTGAAAGTTCTTGATCTGACATGGTGttgatggtggtggtgatgatggtggAAAGGGGAGGAAATGGTCCTGGCCAGCAGACGcaatagagatttttttttttttttttttttttttttttttagctggtgGCATATCTGACCCAGGCGAAACCTCCAACGTTCACCGATACGAAAACCGGACTGATCCGTCAAAACACTGTGAGTGACTGAAAGGCAGAGCTCCGACCTCCGGGTGGTTAGCGGGTTTGCGACCCTTAGCCGTAGACTGCGTTGGAAACGCCTTTGAATTCACTTTAAGACCACAGGCACAGAAGCGGGAAGCTCTTTGATTGCGTCATGTTACGTTTTCCTCGTCTATCTTTGAGGGTGaaccaaaaaacacaacaaaaccaaacaaaaccaaaaaaaaaaaaaaaaaaaaacgtgcacGTTTCCAAGAAAACgaagctcttcttcttttttttttccgagcTCCACCCTCAGAAGAGCTGGACAGCTACTATATATGAATATAGGCATGTAAACCATACATATGGAAGAATACATATGgactatatagatatatagtaAGTGGGTGTAAGCGCGTTGAGTCGGTTCCTCTTGTTCCAGGGCTTGGCGGGGTTCTGCTGGAGCCATGCTGTGGGTCTGTCCGGTACTTGGGGCAGCAAGTGGCTTCTCTCTGTTCAGACTGGTGTACATGTTTGCGGGTCGTACTCAGGGGAGACAGAGGGGGTGGTCGTGTGACCTCGGGAGCGGCCGGTCCGTGTCGGGAGTCTTTAGCCCAGGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU223424 True 3596 lncRNA 0.38 2 9025901 9029910

Neighbor

gene id symbol gene type direction distance location
tm2d1 tm2d1,LOC107715116,LOC107653653,LOC107669801,LOC106574044 coding upstream 20996 8995971 ~ 9004905 (+)
tal1 tal1,LOC107669848 coding upstream 139473 8880269 ~ 8886428 (+)
ier5 ier5,LOC107731541 coding upstream 165832 8858464 ~ 8860069 (+)
si:dkey-121a11.3 si:dkey-121a11.3,LOC107669817,LOC107731537,LOC107715110,LOC107653549 coding upstream 178845 8828910 ~ 8847056 (+)
LOC122327627 LOC107653644,LOC107715111,LOC107588053,LOC100711005,LOC102215641,LOC101481666 coding upstream 206307 8813432 ~ 8819594 (+)
frem1b frem1b,LOC107669836,LOC107599441,LOC107592728,LOC107728586,LOC107715059,LOC107653550 coding downstream 168114 9198024 ~ 9223536 (+)
atpaf1 atpaf1,LOC107653579,LOC107715059 coding downstream 193900 9223810 ~ 9227301 (+)
rab3b rab3b,LOC107592692,LOC107653655,LOC107669838,LOC108429523,LOC103027359,LOC108270584,LOC105904424 coding downstream 198498 9228408 ~ 9235230 (+)
nrd1b nrd1b,LOC107669832,LOC107592727,LOC107728531 coding downstream 206189 9236099 ~ 9248034 (+)
axdnd1 axdnd1,LOC107669794,LOC107653552,LOC107728533,LOC107578687 coding downstream 218777 9248687 ~ 9257262 (+)
G150969 NA non-coding upstream 12049 9013534 ~ 9013852 (+)
G150967 NA non-coding upstream 30418 8995206 ~ 8995483 (+)
G150964 NA non-coding upstream 43545 8982116 ~ 8982356 (+)
G150963 NA non-coding upstream 44136 8981487 ~ 8981765 (+)
G150962 NA non-coding upstream 51995 8973646 ~ 8973906 (+)
LOC122327612 NA non-coding downstream 38822 9068732 ~ 9071172 (+)
G150983 NA non-coding downstream 115301 9145211 ~ 9147388 (+)
G151163 NA non-coding downstream 247780 9277690 ~ 9283004 (+)
G151178 NA non-coding downstream 330518 9360428 ~ 9365322 (+)
G151194 NA non-coding downstream 443076 9472986 ~ 9475031 (+)
G150965 NA other upstream 37210 8988186 ~ 8988691 (+)
G150946 NA other upstream 103934 8921698 ~ 8921967 (+)
G150945 NA other upstream 106121 8919279 ~ 8919780 (+)
G150940 NA other upstream 123590 8901143 ~ 8902311 (+)
pdzk1ip1 NA other upstream 133702 8890622 ~ 8892199 (+)
march2 march2,LOC107728591,LOC107669840,LOC107655247,LOC107592682,LOC107599445 other downstream 424928 9454838 ~ 9530165 (+)
G151232 NA other downstream 547769 9577679 ~ 9580151 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other downstream 858253 9888163 ~ 9893507 (+)
mef2b LOC107687723,LOC107554810,LOC107728551,LOC107719669,LOC107655235,LOC107599488 other downstream 865531 9895441 ~ 9910793 (+)
LOC122328159 NA other downstream 893637 9923547 ~ 9963634 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G157709 NA non-coding CI01000030 null 1602530 ~ 1603265 (+)
eurasian perch (Perca fluviatilis) G91857 NA non-coding NC_053120.1 CM020917.1 284398 ~ 290696 (+)
bowfin (Amia calva) G142340 NA non-coding CM030139.1 CM030139.1 20128367 ~ 20128715 (+)
mexican tetra (Astyanax mexicanus) G91919 NA non-coding NC_035906.1 CM008309.1 19382906 ~ 19389270 (+)
mexican tetra (Astyanax mexicanus) G42244 NA non-coding NC_035901.1 CM008304.1 13095821 ~ 13099379 (-)