LOC122327627 (LOC107653644,LOC107715111,LOC107588053,LOC100711005,LOC102215641,LOC101481666)


Basic Information

Item Value
gene id LOC122327627
gene name LOC107653644,LOC107715111,LOC107588053,LOC100711005,LOC102215641,LOC101481666
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 8813432 ~ 8819594 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223066.1
CGTGACGTCGCTGTAAACACTTGACGCGGAAGTGCGCGAGACGCCGAGATTTAACGACAAACCGCCGGGCGTTcggttaaaaaatgtatatgtttgaaGCGCTCCTGTAGCAACGTATCAAAAGCTCACGTTCAACAATGACGAATGCCAATTTACAGaaaGCCATTGATTTGGCCAGCAGAGCCTCTGAGGAGGACAAGGCCAAAAACTACGAGGAAGCTCTGCGCCTTTATCAACATTCAATCCAGTATTTTCTTCATGTggtaaaatATGATGCTCAGGGAGATAAGGCTAAGCAGAGCATCAGAGCGAAGTGCACTGAGTATCTGGAGCGAGCGGAGCAGCTCAAGCTGTAcctgaagaagaaagagagcgCGCCGCCCTCCAAACCTGTCAAAGTCCCCCAGTCTGACGATAAAGGAACTGACAGTGATGACGGCGATGCTGAGAAAAAGAAATTCCAAAATCAACTCCAAGGTGCTATCGTCATGGAGAAACCCAACATTAAGTGGGACGACGTTGCTGGCTTGGAAGGAGCCAAAGAGGCCCTTAAAGAAGCGGTCATCCTGCCAATCAAATTCCCCCATCTCTTCACTGGGAAGCGCACTCCGTGGAGAGGGATTCTGCTCTTTGGTCCTCCAGGAACGGGAAAGTCCTACCTGGCCAAAGCGGTGGCTACCGAAGCCAACAACTCCACCTTCTTCTCCATCTCGTCATCGGACCTGGTGTCCAAGTGGCTGGGAGAGAGCGAGAAGTTGGTGAAGAGCTTGTTCGGTTTGGCTCGGGAGCACAAGCCTTCCATCATCTTCATCGATGAGATCGACTCCTTGTGCGGCTCCAGAAACGAGAACGAGAGCGAAGCGGCCCGCAGGATCAAGACTGAGTTTCTGGTCCAGATGCAAGGCGTAGGAAACGACAACGAAGGAATTCTGGTCCTTGGAGCAACGAACATCCCCTGGACGCTGGACTCTGCCATCAGGAGAAGGTTCGAAAAGCGCATCTACATCCCTCTTCCCGAGGAGCACGCTCGCTCTTCCATGTTCAAGCTGCACCTCGGCTCCACTCCCAATAGCCTCAGTGAAGCTGATTTCATAACTCTCGGGAAGAGGACTGATGGATACTCGGGCGCTGACATCAGCATCGTCGTTCGGGACGCTCTCATGCAGCCCATCCGCAAAGTTCAGTCCGCCACCCACTTCAAAACGGTCAGAGGAAAGGCGTGGAACAACCCAGATGTTGTGGTGGATGACCTCTTAATGCCCTGCTCTCCAAACGACCCAGGGGCGAGCCAGATGACCTGGGTGGATGTAGCGAGCGATAAACTCCTAGAGCCGATAGTCAGCTTGGAGGACATGCTGAGGTCACTGGAGAAAACCAAGCCCACCGTGAACGAGGACGATCTGGAGAAGCTGAAGAAGTTCACCGAGGACTTTGGCCAGGAGGGATGAGTTTTTGCAGGCTTTACGtggcatttatttatacttttatccATCATGTTTACAAAGCTCCTTctccatattttattttggtcagCCTTTAAGCCTGCGAGGGGGGGGTGTAACAATTTTCTGAGCCTTCATCCTGATCGTATCCAATCAGATTAgattaattattactaaaaatcCTCTTCACTTTAAATGGTTTGTTACAAATGGGTCGTGATATTTTTACTTGGACATTCGAGAGAGATAAAACaagatcatttatatttaacttgGTCACTTGTGCCTCAATGTCTGTAAATGACTGTAAGACGACCAGTCTTAAATCCACTAACATTGAATAAATAACTTGGGATGAGAATCAAAGACAACCAATGAGCTGTGAAAAAAGTGTTTACAGATATGGGAGTACATGTTTTGGGTGTGCAGTCCTTTTTCTTTGTCGCCTTTGAAGTGTTTTTCTACTCTGCTTTTCTACTTTCGTctgtaaataaagtgtttaaaacta

Function

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 4B-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K12196 VPS4; vacuolar protein-sorting-associated protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223066.1 True 1950 mRNA 0.48 11 8813432 8819594

Neighbor

gene id symbol gene type direction distance location
ankrd29 ankrd29,LOC107669827,LOC107653646,LOC107731532,LOC107715109 coding upstream 566 8807166 ~ 8812866 (+)
osbpl1a LOC107592705,LOC107757490,LOC107653641,LOC107715107 coding upstream 41213 8755638 ~ 8772219 (+)
lrrc39 lrrc39,LOC107592708,LOC107715106,LOC107653639,LOC107588057 coding upstream 60566 8749524 ~ 8752866 (+)
dbt dbt,LOC107715105,LOC107669841,LOC107592709,LOC107588055,LOC107653638 coding upstream 66022 8740404 ~ 8747410 (+)
dph5 dph5,LOC107715097,LOC107669825 coding upstream 162963 8641672 ~ 8650469 (+)
si:dkey-121a11.3 si:dkey-121a11.3,LOC107669817,LOC107731537,LOC107715110,LOC107653549 coding downstream 9316 8828910 ~ 8847056 (+)
ier5 ier5,LOC107731541 coding downstream 38870 8858464 ~ 8860069 (+)
tal1 tal1,LOC107669848 coding downstream 60675 8880269 ~ 8886428 (+)
tm2d1 tm2d1,LOC107715116,LOC107653653,LOC107669801,LOC106574044 coding downstream 176377 8995971 ~ 9004905 (+)
frem1b frem1b,LOC107669836,LOC107599441,LOC107592728,LOC107728586,LOC107715059,LOC107653550 coding downstream 378430 9198024 ~ 9223536 (+)
G150916 NA non-coding upstream 18146 8794161 ~ 8795286 (+)
G150886 NA non-coding upstream 39797 8772636 ~ 8773635 (+)
G150860 NA non-coding upstream 246119 8566961 ~ 8567313 (+)
G150858 NA non-coding upstream 252259 8560402 ~ 8561173 (+)
G150850 NA non-coding upstream 345802 8466155 ~ 8467630 (+)
G150928 stx6,LOC107715114,LOC107669815,LOC107653648,LOC107731540 non-coding downstream 35228 8854822 ~ 8855251 (+)
G150936 NA non-coding downstream 72970 8892564 ~ 8894757 (+)
G150937 NA non-coding downstream 78626 8898220 ~ 8898434 (+)
G150938 NA non-coding downstream 79452 8899046 ~ 8899466 (+)
G150939 NA non-coding downstream 79982 8899576 ~ 8900972 (+)
G150862 s1pr1,LOC107715096,LOC107592715,LOC107669844,LOC107653630,LOC107588065 other upstream 195827 8614289 ~ 8617605 (+)
G150756 NA other upstream 645160 8167449 ~ 8168272 (+)
G150369 NA other upstream 2104541 6708488 ~ 6708891 (+)
ccnt2b ccnt2b,LOC107593034,LOC107663476,LOC107739335,LOC107586955,LOC107653589,LOC107745988 other upstream 2302976 6502914 ~ 6510456 (+)
npb npb,LOC107663585,LOC107587005,LOC107756033,LOC107704419,LOC107593099 other upstream 2574075 6236117 ~ 6239357 (+)
pdzk1ip1 NA other downstream 71028 8890622 ~ 8892199 (+)
G150940 NA other downstream 81549 8901143 ~ 8902311 (+)
G150945 NA other downstream 99685 8919279 ~ 8919780 (+)
G150946 NA other downstream 102104 8921698 ~ 8921967 (+)
G150965 NA other downstream 168592 8988186 ~ 8988691 (+)

Expression


Co-expression Network