dph5 (dph5,LOC107715097,LOC107669825)


Basic Information

Item Value
gene id dph5
gene name dph5,LOC107715097,LOC107669825
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 8641672 ~ 8650469 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223099.1
GGTTGTCAGTTGCTGCATGTGGCGCCATGTGAGTGCAGAGTAACAGAGAACGGTGAAGAGCTAAATGTATTCTGCAAGCTTTTCAGCGTCATATAAACATAATAGTATCTCGTCAGGCAGCTCTTTTGCGTGTTAAAGCGTGTATACATATATGGTTTAGCCGTTGTGCGTTCCGCTGTCATCTGTGGTTTAGAGATGTTGTATTTCATCGGTCTTGGTCTGGGCGATTGTAAAGACATCACTGTTAAAGGTTTAGAGATCGTCCGGCAGTGTAGTCGCGTTTATTTGGAGGCTTACACGTCCATACTGACCGTCGGGAAGGAAGCTTTGGAGGAGTATTATGGGCGCGAGTTGCTGCTGGCCGACAGAGATATGGTGGAACAACAGGCGGATGAGATCCTGAAGGGAGCAGATGTCAGTGATGTGGCGTTTCTAGTGGTTGGTGATCCTTTTGGAGCAACGACCCACAGCGACCTGGTTCTGAGAGCGTTGAATGCTGGGATTCAGTATCGCGTTATTCACAATGCCTCCATCATGAACGCGGTGGGCTGCTGTGGATTGCAGCTGTACAACTTTGGGGAGACGGTGTCTATTGTGTTTTGGACGGACACATGGAGACCTGAGAGCTTCTACGATAAGATCAAGAAGAACAGGGACATGGGCCTGCACACGCTGTGCCTGCTGGATATCAAAGTCAAAGAGCAGTCCATGGAGAATTTAATGAGGGGTCGAAAGATTTACGAGCCTCCCAGATACATGACTGTCGCTCAGGCATCTGAGCAACTCCTGGAGATACTACAGAACCGACGGGATCGGGCTGAAGAACTGGCAATGACTGAAGACACGGTGTGTGTTGGTCTGGCTCGGGTCGGAGCTGAGGACCAGACCATCCGTTCTGGTACACTGCAAGAGTTGGCATCGAGTGAACTGGGAGGACCACTTCACTCAATGATCATCAGCGGACACCTTCACCCTCTGGAGGTGGACATGTTGAAACTCTTCAGCGGTCCTGAGGGATTGAAGACTTTGAAGATGACCGATAGTTCCACATACATTTCTTGATATCCAAGAAGCTTCTGCTCTTCATAAAAAAAGTTCCTTTTCCAGTGCTCCTGGCCGGAGGGTCAGGAGAGCACGCAAATGACATAATTGTTATTCCAGAACAAATTTGACCACTTTAACCTTTAAGCACTGGTCAGGCCAGGGTTGAATTTCATTACAAGATTTAGATTGGGAGTGGGACGATTATTTTGACGTGTGGCAGTCATGTTCTTGCTGTCAAACAAAGTAAATGATGGAATTAAAATAGAGGAAATGGAAAAGGTTATTGTGGACCAACTGCATCTGGGTTGCATTAGTGCCACTGAAATTAAGCTTTCTTCAAAATTGGCATAATGTTTCAGTACCAAGAGCCTTTCTTAATGGAACTTTCTCAGCAAGAATGTAAATAAGATAAAAGCAGAAGCTAAGATTCCTTTGAGCATGTCATAATGGATGAAGATTGATTTTCGTAAAATAAAGACACTCATTTCGTCGCCACTGATCACATCGACGCCCTA

Function

symbol description
dph5 Predicted to enable diphthine synthase activity. Predicted to act upstream of or within methylation and peptidyl-diphthamide biosynthetic process from peptidyl-histidine. Orthologous to human DPH5 (diphthamide biosynthesis 5).

NR:

description
diphthine methyl ester synthase-like isoform X1

GO:

id name namespace
GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine biological_process
GO:0004164 diphthine synthase activity molecular_function

KEGG:

id description
K00586 DPH5; diphthine methyl ester synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223099.1 True 1559 mRNA 0.46 7 8641672 8650469

Neighbor

gene id symbol gene type direction distance location
serpinc1 LOC107592718,LOC107669814,LOC107715095,LOC107588063,LOC107757486,LOC107653628 coding upstream 36898 8599832 ~ 8604774 (+)
rc3h1a LOC107715093,LOC107653627,LOC107588069,LOC107757484 coding upstream 42052 8578130 ~ 8599620 (+)
stil stil,LOC107715092,LOC107669819,LOC107653624,LOC107757483 coding upstream 64054 8569749 ~ 8577618 (+)
klf2a klf2a,LOC107592721,LOC107715091,LOC107665506,LOC107653623,LOC107757481,LOC107588070 coding upstream 97907 8541134 ~ 8543765 (+)
fam32a fam32a,LOC107757479 coding upstream 171646 8468603 ~ 8470026 (+)
dbt dbt,LOC107715105,LOC107669841,LOC107592709,LOC107588055,LOC107653638 coding downstream 89935 8740404 ~ 8747410 (+)
lrrc39 lrrc39,LOC107592708,LOC107715106,LOC107653639,LOC107588057 coding downstream 99055 8749524 ~ 8752866 (+)
osbpl1a LOC107592705,LOC107757490,LOC107653641,LOC107715107 coding downstream 105169 8755638 ~ 8772219 (+)
ankrd29 ankrd29,LOC107669827,LOC107653646,LOC107731532,LOC107715109 coding downstream 156697 8807166 ~ 8812866 (+)
LOC122327627 LOC107653644,LOC107715111,LOC107588053,LOC100711005,LOC102215641,LOC101481666 coding downstream 162963 8813432 ~ 8819594 (+)
G150860 NA non-coding upstream 74359 8566961 ~ 8567313 (+)
G150858 NA non-coding upstream 80499 8560402 ~ 8561173 (+)
G150850 NA non-coding upstream 174042 8466155 ~ 8467630 (+)
G150847 LOC107757454,LOC107588074,LOC107653622,LOC107715088,LOC107561899,LOC107665497 non-coding upstream 176647 8464639 ~ 8465025 (+)
G150846 NA non-coding upstream 182778 8458588 ~ 8458894 (+)
G150886 NA non-coding downstream 122167 8772636 ~ 8773635 (+)
G150916 NA non-coding downstream 143692 8794161 ~ 8795286 (+)
G150928 stx6,LOC107715114,LOC107669815,LOC107653648,LOC107731540 non-coding downstream 204353 8854822 ~ 8855251 (+)
G150936 NA non-coding downstream 242095 8892564 ~ 8894757 (+)
G150937 NA non-coding downstream 247751 8898220 ~ 8898434 (+)
G150862 s1pr1,LOC107715096,LOC107592715,LOC107669844,LOC107653630,LOC107588065 other upstream 24067 8614289 ~ 8617605 (+)
G150756 NA other upstream 473400 8167449 ~ 8168272 (+)
G150369 NA other upstream 1932781 6708488 ~ 6708891 (+)
ccnt2b ccnt2b,LOC107593034,LOC107663476,LOC107739335,LOC107586955,LOC107653589,LOC107745988 other upstream 2131216 6502914 ~ 6510456 (+)
npb npb,LOC107663585,LOC107587005,LOC107756033,LOC107704419,LOC107593099 other upstream 2402315 6236117 ~ 6239357 (+)
pdzk1ip1 NA other downstream 240153 8890622 ~ 8892199 (+)
G150940 NA other downstream 250674 8901143 ~ 8902311 (+)
G150945 NA other downstream 268810 8919279 ~ 8919780 (+)
G150946 NA other downstream 271229 8921698 ~ 8921967 (+)
G150965 NA other downstream 337717 8988186 ~ 8988691 (+)

Expression


Co-expression Network