lrrc39 (lrrc39,LOC107592708,LOC107715106,LOC107653639,LOC107588057)


Basic Information

Item Value
gene id lrrc39
gene name lrrc39,LOC107592708,LOC107715106,LOC107653639,LOC107588057
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 8749524 ~ 8752866 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222412.1
TAAATATAGACATTGGCCGGAGTTACGCTTCAAGAGGGGAAACCTGTGACAAACACTGAGCGGATAATACTTATTCTTTCAGCACGGGTCACACTTAATGAAACTGTCAGAGGAATTATACCATTGGTGCAGCATTGACTATCTACGTATCAAATGGGAGCTAACTTGGTAAAAACATGGCACAAATGCTGGAAGGACGGTATGACCCAATGAGAGTGcaaactgtgtgtgtgaggtgatATTTGGAGCTCTGTACCATCATGACTGGGGTCACGGTGTACTGTGGGACAGTGAACTCTATCAAGGCTCTGTGGGAAACCAGGATAAAGAAAAGCAAAGATGAActgaagaaggagagagagcagagagacagGAAAGCAGTGGGTAGGTTGACAGGTGCCTGGGAGGATCGTATCACTTTGGCCAAGCTAAAGGAAAAAGTTGTGACGGAGGAAGGACGCGTCATCCTGCGGATTGAAAAAGAGGAGTGGAAGACGCTTCCTCCTGCATTGGTCCAACTCTCACAGATCCAAGAATGGCAGTTACACCGAATAGGACTTCAAAAAATCCCACGGTTCATCTCGAGCTTTGAAAGCCTCATAGTCTTGGACTTGTCTCGTAATTCAGTCACAGAGATTCCCAAAGAGATTGGCCAACTAACTCGGTTACGAGAGCTGTTGTTGAGCTATAACAGAGTACGTTGTGTACCAGAAGAACTGGGCTGTTGTGAAAATCTGGAGAAACTGGAACTTGCAATGAACGAAGATCTGGATGAGCTGCCTACTCAGCTTAGCAATCTAAAGAAGCTGTATCACTTGGACCTCTCTATGAACCAATTCACCACCATTCCAGATTGTGTGGTCAACCTTCCTTCTCTAGAGTGGCTAGACATGGGCAGCAACAGGTTGGAAAGTCTGCCAGAAGATATTCACAGAATGGAGAAACTTCACACCCTGTGGCTCCCAAGAAATGAACTAGAGTACCTGCCAGACAATATTAGTCGCATGCAAAGTCTGGACACGCTAGTTCTGAGCAAAAATAAACTACGAGACATTCCTCCACTTATGGAGGGCATGAGTAACCTCAGGTTTGTGAATTTCCGAGACAATCCTTTGACGTATGATGTGACTCTTCCTGATTTAAAAGAGGACGTAGATGAAGAAGAGAACGACCAGGAGATGTTTGGTCGTGACTTCATGCACTTCTACATCCAAGAGGCCCGGAAAAGAGGATCCCAAACGTTTACGTCAGTGCTAAATGTGACGTTGGATGGCGTGTCAGAGACGGCATCATCTATGTGACTTGCATGCTGGCTTCTGTCTGCTCGTCCGTCTTCAGGCTTGATCCTCTGGTCCTTCATGCCAAGTTCTGCGAAGAGCACTTCTCGCCCTTTTAAATGTCTTGTCGCCTTTGCTGTTTGTTGAAATTGCTGCTTCTAGTATGCTCTAACTAATGTTTATGGTTaagctaaagtaaaaaaaagaaatccataaacattgattaaataaaatgaagcatACGTGTCCTGCACCTGTGCTTGTTTTTAAGAA

Function

symbol description
lrrc39 Predicted to enable protein serine/threonine phosphatase activity. Acts upstream of or within cardiac muscle tissue morphogenesis; heart contraction; and sarcomere organization. Predicted to be located in M band. Predicted to be active in cytoplasm and intracellular membrane-bounded organelle. Is expressed in adaxial cell; floor plate; myotome; pectoral fin musculature; and somite. Orthologous to human LRRC39 (leucine rich repeat containing 39).

NR:

description
leucine-rich repeat-containing protein 39

GO:

id name namespace
GO:0055008 cardiac muscle tissue morphogenesis biological_process
GO:0045214 sarcomere organization biological_process
GO:0060047 heart contraction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222412.1 True 1550 mRNA 0.45 9 8749524 8752866

Neighbor

gene id symbol gene type direction distance location
dbt dbt,LOC107715105,LOC107669841,LOC107592709,LOC107588055,LOC107653638 coding upstream 2114 8740404 ~ 8747410 (+)
dph5 dph5,LOC107715097,LOC107669825 coding upstream 99055 8641672 ~ 8650469 (+)
serpinc1 LOC107592718,LOC107669814,LOC107715095,LOC107588063,LOC107757486,LOC107653628 coding upstream 144750 8599832 ~ 8604774 (+)
rc3h1a LOC107715093,LOC107653627,LOC107588069,LOC107757484 coding upstream 149904 8578130 ~ 8599620 (+)
stil stil,LOC107715092,LOC107669819,LOC107653624,LOC107757483 coding upstream 171906 8569749 ~ 8577618 (+)
osbpl1a LOC107592705,LOC107757490,LOC107653641,LOC107715107 coding downstream 2772 8755638 ~ 8772219 (+)
ankrd29 ankrd29,LOC107669827,LOC107653646,LOC107731532,LOC107715109 coding downstream 54300 8807166 ~ 8812866 (+)
LOC122327627 LOC107653644,LOC107715111,LOC107588053,LOC100711005,LOC102215641,LOC101481666 coding downstream 60566 8813432 ~ 8819594 (+)
si:dkey-121a11.3 si:dkey-121a11.3,LOC107669817,LOC107731537,LOC107715110,LOC107653549 coding downstream 76044 8828910 ~ 8847056 (+)
ier5 ier5,LOC107731541 coding downstream 105598 8858464 ~ 8860069 (+)
G150860 NA non-coding upstream 182211 8566961 ~ 8567313 (+)
G150858 NA non-coding upstream 188351 8560402 ~ 8561173 (+)
G150850 NA non-coding upstream 281894 8466155 ~ 8467630 (+)
G150847 LOC107757454,LOC107588074,LOC107653622,LOC107715088,LOC107561899,LOC107665497 non-coding upstream 284499 8464639 ~ 8465025 (+)
G150846 NA non-coding upstream 290630 8458588 ~ 8458894 (+)
G150886 NA non-coding downstream 19770 8772636 ~ 8773635 (+)
G150916 NA non-coding downstream 41295 8794161 ~ 8795286 (+)
G150928 stx6,LOC107715114,LOC107669815,LOC107653648,LOC107731540 non-coding downstream 101956 8854822 ~ 8855251 (+)
G150936 NA non-coding downstream 139698 8892564 ~ 8894757 (+)
G150937 NA non-coding downstream 145354 8898220 ~ 8898434 (+)
G150862 s1pr1,LOC107715096,LOC107592715,LOC107669844,LOC107653630,LOC107588065 other upstream 131919 8614289 ~ 8617605 (+)
G150756 NA other upstream 581252 8167449 ~ 8168272 (+)
G150369 NA other upstream 2040633 6708488 ~ 6708891 (+)
ccnt2b ccnt2b,LOC107593034,LOC107663476,LOC107739335,LOC107586955,LOC107653589,LOC107745988 other upstream 2239068 6502914 ~ 6510456 (+)
npb npb,LOC107663585,LOC107587005,LOC107756033,LOC107704419,LOC107593099 other upstream 2510167 6236117 ~ 6239357 (+)
pdzk1ip1 NA other downstream 137756 8890622 ~ 8892199 (+)
G150940 NA other downstream 148277 8901143 ~ 8902311 (+)
G150945 NA other downstream 166413 8919279 ~ 8919780 (+)
G150946 NA other downstream 168832 8921698 ~ 8921967 (+)
G150965 NA other downstream 235320 8988186 ~ 8988691 (+)

Expression


Co-expression Network