G42244


Basic Information

Item Value
gene id G42244
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 13095821 ~ 13099379 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU56886
TTTCCTGCATGGAATGGTGAACACAAAAAAGATGCCTAGATGCATTTATAATAGGGGCATCCTTTGGCTGTCTATGTCATTGTCTTCTGcctaaaactaattttaaaatgcataaaaacgcTCTCTTTTCTTACCAACAATCCTCAGAATTACCTAGATTTAGCTTCAACAACACTGATGCAACAAAGAACCTTCAAAAACATACAGCAAGCATACTTGTAACATCCATTTACAATGGGGCTTTCACCTCAATACCTTATACTTTTCAAGTATAGGAATACTCTATACCAtcaaaagaagaaacaaaaagaaaaagaaaaaacaagtctttaaatacatacaaaaacgagaaaagcaaaagaaaaaaaagggaaaaaaatcggAAACAGGAAAGTTTTCAACTTAAATCCAGTTCCCcagagaacaaacaaacaaaaaccagTTCTATTAATGTGGCCTTATTACAAACGATGAGAAAATTCACAACACTAGTTTTTTCCTCATTTAATCAATGTTACAAAAGTCCTGCATTATAAAATAGGGCAGCTTTAAAATCAGTGTAATTAATAaaactatacaatatacaaaCAACACATCTCCCAACACTCAGAGAGAGGCGTGTCCTCGcactctcctctcctccgtctGAATTCCCATTTGTTCAGCTTCTCCCCACCGCTCCCACCACTTCCGCGCACCCCCCCTCCTCCGGAAAAAAAGAACGACAACTAAAAATgacactcacaaacacaagAACGAAACAGACTGCCCAAActattgcttttTGCAATTTTGTCATTATCTTACACACAGCCACATATCTTGCTGATTAGATGCTAGGCTGCTctaaacaggtttttttttttctaacacaaaaaaaatgtccgTGCAATCGATTTATTTTATTCCCTTCGCTCTCTTGAAGCCCTGgaagctgtttattttttttttccttttatagtttttgatttttttgagtttttaattCTCACAATTGCCATTGTTTCAATATATTTAGTGCAGATAATTAAGAAAGTAATGCCCAACTCATCACTAAAGGGTAGGCaagaacaatgaaaaaaataaaataaaaataaaagtcacgctaatacaaaataagaaaagacaACCCACACAACAAGTGTAACTAGTTGTTTTTAACCGTATCGTATTGTGTCTTGTCAAGACTGTTgggatttatttttgttttccccAAATCAAATTAACTCTGGTTAACTTGCTAGTaaatgatatttatatatatgtatatatatgtatgcaaTAGACAATAACAGACAGTTAATAAACGTAAACAGTTAATAGAACATGGACgtttttctattaaagtgggtgtgtttttgtttttttaaatgtgtaatgcTGGAGAAAATCCTgcgtttttaagtttttgaaaAGTGGATTGTTGTGTCGGAGAGGACGTTTCCTTATTTTAAGGCTTGCTTGTGACCGAAACcaagaaactaataaaaatccaaaaaataaaaaagtaagtacTGTTACAGTAAGTACGCTTACTGTAAATCAAACACAAAGAAAGTATAACCCGGCCCAGGCTGGTGAGGATGTCTCAAGTGGGATTTAATCCAACACTGACCTACATCCAACCTCCAGCCAGGCAAGTGCAACACTAACtttggcaaaagaaaaaaaaaagagagaacatcTACATGAGTGCAAGCAAGTATTgcatattaatgtaatttttttattccttattgTTCTGGGAACGAATCAGGaagactaaaataataaaaaacaaaacaaaataatccaACGTGATTTAGAAATTGCAGCAACATCCATAAATATCAATAATACACTTTAGTGTTTACACTACCAGAATAATTCAGAATCAGGGTATAAGGAACGGGGCGGGGGCTGGGCTCAAACAGTTTAACAATTACACTCATAAACGTCTACTTCACAGTACAGCTATACCGGGGCCCAATATTATCTGGGGTTTGGGGTGCTGAGGCTGGATTCACAGTCACTTGTTCACTCTCGCGCAGCACCAGGATGTTGCATCATCATATCGTATGGTCTGGGACACTCGCTGATAAGTAAGAGTGAGGTGGAGGGAAGAAGGACAGGTACAcccttatataaaatatataaaggtgctacaaaaaaactcaaaaaaatattcgagtgatgcaaaagaagaaccacttttgtgTAAAATTCAGTAAAGTAGCAAATATGAATTCAAAGAAGATTTCAATGTTTAAAAAGGGGTCTTTTGTTTCGAGAAACTAGATTAAAGGTTCATGGCTTCTTTAAGGGAATGGAGGGTTAACCTTTAACAGGGTTCCCACAGGTtgttaaaaagtcttaaaatgtcttaaattcaAATCCGGgtaattaagttaaaataaattgtcttaaatttactgtaaatttgctgtaggtattaaatATTCAGACTGTGTGTTTAATGCCGGTGGGAAAGCACATACTAACTTTGtgagcagtgagttagctaactttACCGTAAAGAGAGCTAGCCAatgttagcggcaagctagctaacatactaacattagaagttagctacattactggggagagaactgagGTTAGCGGAAAGCTAGTTAACAtgctaatataataaaattagctgtgagttagctatgttaccggggagagaactaaggttagcggaaagctagctaacattagtggtgagctCGATAGCATAGTAACACTGGCAGCCAAAGAaaatatgactacatttttgggtctaAAACAGGtcctaaaaagcattaaatttgacttttaaaatggtgcaagaaccctgtttAAGAAGCTTTTTAGGACCTTTATTTTAGGAGTTGTACAAACTTCTGAGcacttttcaaaataaaggtcTTATAAAGGTTTCTTTGAGAGATCCTAAAATTTGAACCTGGTGATGTAATCGATTGGCCATTTATTGTCAGATTCACCATGGATCCCTAAATCCAGGACTGGATACCAGACACACAATCAAAGTCCAGATTTGAAGATTTATTAAGCGATTTCTAAAGATTTTAAGAAGTAACAGTttaaagtagggctgcaactagtGCTGGTGGTTATACCGGTTTATTCTGTTTACCGCGGGGGGAAACTAGGACAGGTATGCATTTctctcataccgccataccactagaggcgctgcggaGCGCCATGCGGAACAGCACCATCAGAGAAGCACACACAGCCGAGTCAAACGCTGGTCTAGCTCTGGAGAGAAATCAGAACAACTCctgcttctctttttctcactgtatgagtatttttattccagtaaaatagagcagtaactatagccctaataaatgtattaatactgtagcttgaaggatgatttaaatgtattttttgactagagaaagaaggtaattggggctttaaatactgtaatgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56886 True 3429 lncRNA 0.36 3 13095821 13099379

Neighbor

gene id symbol gene type direction distance location
LOC103026589 LOC108429520,LOC108271303 coding downstream 293638 12756679 ~ 12802183 (-)
atpaf1 atpaf1 coding downstream 351114 12733591 ~ 12744707 (-)
LOC103027359 LOC103027359,LOC108429523,LOC107653655,LOC107592692,LOC107669838,LOC108270584,LOC103369105 coding downstream 363969 12719795 ~ 12731852 (-)
LOC103026065 nrdc,LOC108429524,LOC108271269,LOC106613566 coding downstream 379631 12675509 ~ 12716190 (-)
axdnd1 NA coding downstream 422064 12657387 ~ 12673757 (-)
pdzk1ip1 pdzk1ip1 coding upstream 269915 13369294 ~ 13373938 (-)
tal1 tal1 coding upstream 281720 13381099 ~ 13391023 (-)
ier5 ier5 coding upstream 349213 13448592 ~ 13450507 (-)
kiaa1614 LOC107588106,LOC107592730 coding upstream 375715 13475094 ~ 13505789 (-)
LOC103033151 LOC108429511,LOC100711005,LOC102215641,LOC103357413,LOC103137085,LOC103463808,LOC101481666 coding upstream 426963 13526342 ~ 13536029 (-)
G42229 NA non-coding downstream 152664 12889778 ~ 12943157 (-)
G42125 NA non-coding downstream 339704 12755792 ~ 12756117 (-)
G42113 NA non-coding downstream 411051 12683532 ~ 12684770 (-)
G42071 NA non-coding downstream 461015 12634443 ~ 12634806 (-)
G42069 NA non-coding downstream 462354 12632814 ~ 12633467 (-)
G42261 NA non-coding upstream 154943 13254322 ~ 13258713 (-)
G42281 stx6,LOC107715114,LOC107669815,LOC107653648,LOC107731540 non-coding upstream 354178 13453557 ~ 13456518 (-)
G42289 NA non-coding upstream 409686 13509065 ~ 13517613 (-)
G42308 ttc39c,LOC108429509,LOC108241210,LOC104968120 non-coding upstream 500115 13599494 ~ 13599956 (-)
G42316 NA non-coding upstream 521495 13620874 ~ 13622023 (-)
nr2c2ap nr2c2ap,LOC107554809,LOC107687739,LOC107728548 other downstream 1322719 11767698 ~ 11773102 (-)
borcs8 borcs8,LOC107599453,LOC107554813,LOC107728595 other downstream 1333560 11756447 ~ 11762261 (-)
mef2b mef2b other downstream 1363925 11720126 ~ 11731896 (-)
LOC103041480 NA other downstream 1416802 11618444 ~ 11679019 (-)
LOC103040665 cilp2,LOC107728576,LOC107655229,LOC107687716,LOC107599460 other downstream 1625943 11437652 ~ 11469878 (-)
tm2d1 tm2d1,LOC107669801,LOC107653653,LOC107715116,LOC106574044,LOC107731529 other upstream 42994 13142373 ~ 13162805 (-)
fam32a fam32a,LOC107757479 other upstream 1204161 14303540 ~ 14305976 (-)
G42516 NA other upstream 1236551 14335930 ~ 14339171 (-)
G42661 NA other upstream 1363294 14462673 ~ 14526890 (-)
G42712 LOC108438667,LOC105021477,LOC107674533 other upstream 1761175 14860554 ~ 14861338 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G91943 NA non-coding NC_053120.1 CM020917.1 286718 ~ 293940 (-)
eurasian perch (Perca fluviatilis) G158551 NA non-coding NC_053126.1 CM020923.1 27799515 ~ 27801912 (+)
striped catfish (Pangasianodon hypophthalmus) G181588 NA non-coding NC_047605.1 CM018551.1 14867927 ~ 14930862 (+)
tiger barb (Puntius tetrazona) G150970 NA non-coding NC_056720.1 CM032089.1 9025901 ~ 9029910 (+)