LOC103033151 (LOC108429511,LOC100711005,LOC102215641,LOC103357413,LOC103137085,LOC103463808,LOC101481666)


Basic Information

Item Value
gene id LOC103033151
gene name LOC108429511,LOC100711005,LOC102215641,LOC103357413,LOC103137085,LOC103463808,LOC101481666
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 13526342 ~ 13536029 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240094.3
GACGTTCATCACGGAAGAGACCTAGGAAAAGGTTTAGATGAAACTAGTACACAAAGTGATTTAGTGAATATTGTAGTAgattgtttatgtattttacaaCGTGTTTGGTGTAGGAATAGACATGTAGCTGAATATCAGCTGTgtttactgtactgtagattaaATTTCAACTTTAAAGAGTTAAACCACGACTACAAATGGCCAATCTACAGAAAGCGATAGACCTGGCCACCAGAGCTGCTGAGGAGGACAAGGCAAAGAACTATGAGGAAGCTCTTCGTCTGTACCAGCACTCAGTTCAGTACTTTCTACATGTGGTGAAGTATGAAGCTCAGGGGGACAAGGCAAAGCAGAGCATCCGGGCTAAGTGTGCAGATTACTTGGACAGAGCAGAGCAGCTGAAGGAGTacctgaagaagaaagagaaagcaccTCCCTCCAAGCCTGTGAAAGTGTCTGATGATAAAGGGAATGAAAGTGATGATGGCGAGAActcagagaaaaagaaactaCAGGGTCAGCTTCAAGGAGCCATCGTCATGGAGAAGCCGAATGTTAAATGGAATGACGTTGCTGGCTTGGAAGGAGCTAAAGAGGCGTTGAAAGAGGCGGTGATCCTGCCAATCAAATTCCCACACCTTTTCACAGGTAAAAGGACTCCATGGAGGGGCATTCTGCTTTTTGGCCCTCCAGGAACAGGAAAGTCCTACTTGGCAAAAGCAGTGGCTACTGAGGCCAATAACTCCACCTTCTTCTCAATCTCCTCCTCTGATCTGGTGTCTAAGTGGCTGGGTGAGAGTGAGAGGTTAGTGAAGAACCTCTTCAGCATGGCACGGCAACACAAACCCTCTATCATCTTCATTGATGAGATTGACTCCCTGTGCGGATCCAGGAGTGATAACGAAAGTGAAGCAGCTCGCAGGATCAAGACTGAATTTCTGGTTCAGATGCAAGGTGTAGGTAATGATAATGAGGGAATTCTGGTGCTTGGAGCAACTAATATCCCTTGGACTTTAGATTCTGCAATCAGGAGAAGGTTTGAGAAGCGTATCTACATCCCACTTCCTGAGGAACACGCTCGATCCTTCATGTTCAAGCTTAACCTCGGCACCACCCCCAGCAGCCTCACTGATGAGGACTTTCACACCCTGGGGAAGAAGACTGAGGGCTACTCTGGTGCAGACATCAGCATCATTGTTAGGGATGCTCTTATGCAGCCCATACGCAAAGTCCAGTCTGCCACACACTTTAAAAAGGTCAGAGGAAAGACATGGAACAACCCTGATGCAGTCGTAGATGACCTTTTGACCCCATGCTCTCCAGGTGACCCAAATGCCATTGAGATGACCTGGGTAGACGTTCCAGGAGACAAACTGCTGGAGCCTATTGTCTGCATGGCGGACATGCAGAGATCACTGGACAAGACCAAGCCCACTGTAAATGAGGAAGACTTGGAGAAGCTGAAAAAGTTTACTGAGGACTTTGGCCAGGAAGGCTAACTCCAACCTGAGCCTAACATCCAAAAACCTTTTACTCTatttgtttcacattttaactgttCTACATATGTTTACCTCATGTGGCATCTGAGCCATTTAAATCCTCCTCTTTTGATATACATAATTTGTAATGAAATGTCTATGTATGATATTGGGTGTTTGATGAACTGACACTGGTTATTTATTGAATAAGGTTGTAATTATATGGGAATATTGAGCTTGGCAGCATTTTAAGGGGATTTTCCTCAGCCTTAGGGTGCCTAGAAAGAAAAAACTTTTTCCtgaacattaaaataatcaacagataatgtacagtaaatggcCTTTCTGACTGTCAGATGTtctgtgttttatacatttttgtgtgTTCAGTATCACAGTgggtgtatatactgtacatctgtTCTCCTGTCTAAGTAGACGTATTGCCAACTATTTAACATCCTATTATGGAATAATGGACATATGTTCATACTTTTTACAGTACTGAggggtttctttaaaataatgcataaaGCAGTAAAATCTT

Function

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 4B-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K12196 VPS4; vacuolar protein-sorting-associated protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240094.3 True 2028 mRNA 0.43 11 13526342 13536029

Neighbor

gene id symbol gene type direction distance location
kiaa1614 LOC107588106,LOC107592730 coding downstream 20553 13475094 ~ 13505789 (-)
ier5 ier5 coding downstream 75835 13448592 ~ 13450507 (-)
tal1 tal1 coding downstream 135319 13381099 ~ 13391023 (-)
pdzk1ip1 pdzk1ip1 coding downstream 152404 13369294 ~ 13373938 (-)
LOC103026589 LOC108429520,LOC108271303 coding downstream 724159 12756679 ~ 12802183 (-)
ankrd29 ankrd29,LOC107731532,LOC107653646,LOC107715109,LOC107669827 coding upstream 1596 13537625 ~ 13551388 (-)
LOC103034756 osbpl1a,LOC108429508,LOC108271178,LOC107592705 coding upstream 94192 13630221 ~ 13664887 (-)
lrrc39 lrrc39,LOC107592708,LOC107653639 coding upstream 136877 13672906 ~ 13679084 (-)
LOC103036543 NA coding upstream 144688 13680717 ~ 13683200 (-)
dbt dbt,LOC107715105,LOC107588055,LOC107669841,LOC107653638,LOC107592709 coding upstream 147266 13683295 ~ 13693366 (-)
G42289 NA non-coding downstream 8729 13509065 ~ 13517613 (-)
G42281 stx6,LOC107715114,LOC107669815,LOC107653648,LOC107731540 non-coding downstream 69824 13453557 ~ 13456518 (-)
G42261 NA non-coding downstream 267629 13254322 ~ 13258713 (-)
G42244 NA non-coding downstream 426963 13095821 ~ 13099379 (-)
G42229 NA non-coding downstream 583185 12889778 ~ 12943157 (-)
G42308 ttc39c,LOC108429509,LOC108241210,LOC104968120 non-coding upstream 63465 13599494 ~ 13599956 (-)
G42316 NA non-coding upstream 84845 13620874 ~ 13622023 (-)
G42318 NA non-coding upstream 87296 13623325 ~ 13623672 (-)
G42353 NA non-coding upstream 93859 13629888 ~ 13630159 (-)
G42356 NA non-coding upstream 163961 13699990 ~ 13736438 (-)
tm2d1 tm2d1,LOC107669801,LOC107653653,LOC107715116,LOC106574044,LOC107731529 other downstream 363537 13142373 ~ 13162805 (-)
nr2c2ap nr2c2ap,LOC107554809,LOC107687739,LOC107728548 other downstream 1753240 11767698 ~ 11773102 (-)
borcs8 borcs8,LOC107599453,LOC107554813,LOC107728595 other downstream 1764081 11756447 ~ 11762261 (-)
mef2b mef2b other downstream 1794446 11720126 ~ 11731896 (-)
LOC103041480 NA other downstream 1847323 11618444 ~ 11679019 (-)
fam32a fam32a,LOC107757479 other upstream 767511 14303540 ~ 14305976 (-)
G42516 NA other upstream 799901 14335930 ~ 14339171 (-)
G42661 NA other upstream 926644 14462673 ~ 14526890 (-)
G42712 LOC108438667,LOC105021477,LOC107674533 other upstream 1324525 14860554 ~ 14861338 (-)
socs7 socs7 other upstream 1413855 14949884 ~ 14966800 (-)

Expression


Co-expression Network