pdzk1ip1 (pdzk1ip1)


Basic Information

Item Value
gene id pdzk1ip1
gene name pdzk1ip1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 13369294 ~ 13373938 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669625.1
CTTCCTCCAAACGCTGCGCTCACCACTGAGAGCCCACTACTGCCATCCAGGAAGGGTCTGGAATGTGAGAAAGTTGATTAGTGAGAAGGCCTGAGTCTAGATTAAGCAGTACTGAAAGAAGGATGCTGAGAAAAGTGCTGTATCAGTACTgtacaataaataacaatattgctTGCTAATAGCTAATAAACCCCTGCTTGCAGGTCTCTGGTTTAGTAGCAGGTAAATGATTGACGCAGCCCTCAGCTGGGAATGTTCATCATTCGTTTTCCTGATCCAGAGAGAAGCAGTGAACATCTCCACCGCTACTGTCTGACTGAGAGAAgagcttttactgttttttcttcatttattgcAGTTGTAAAAAGGTCTGAGATGGGAAAATCTGTCGTAGTGCTTCTTTGGCTACTGGTGATACTGGAAACAGCTTCTGCTCAAGCAGagaaagcagagagaggTTTACCAAACTGGCTGACGGGCATCATAGCGGTTGCTGTGTTTCTCTTCCTGGTCTTCATTGCTTTCCTGGTCAACAAAGCCTGGTGTGAGACTCGGAGTGACAGTCAGGAAGTGAAGACTGAAGTGACCAGTAATGAATATTCAATGAGCAATGGCACAAATCTTGATTCAGTCAGGAGCAGTGAACACCATGAGGCTTACGAGAACGTGATCATCcacaaaactgaagaaaaagtAACAGTCATGTGAATCTGACCAGttacacacattacagcattCAAAGACACACATTGATCTAAAGGTCTGTTAATTTATGatgatttaattataattagttAATGCACTACACTGCTTTTAATTACTGTACATGTATCAGTGtttatatataGCTGATATCAGATGATATTTACTCGGGTGTCCAGTGGTATCTGGCATCAGCATGTTCCAGAAGTCCTGTAATTTTAAGGAGGATCTGACACAGGAACAGTATATTTCACATAAAAGAAAACAGGCCTCATCCGAGCAGATCATCTTCTTCCACTCATCCAACATCCAGTCCAGACCTGAGTGCCCACAGGAGGGGATTTTAATGATGGAAAGAAGTCAGCATGGGCAAATAAGCAGCAGGGGGcgcttttttgtatttacccACTGTATCTGCAGTTTCTCTTTAATTACAGCATCTGTAATTTACTTTTTccataataaataagtaataaataaataataaaagtgtttgCTGTATCCGGTTTAA

Function

symbol description
pdzk1ip1 Acts upstream of or within hemopoiesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in liver. Orthologous to human PDZK1IP1 (PDZK1 interacting protein 1).

NR:

description
PDZK1-interacting protein 1-like

GO:

id name namespace
GO:0030097 hemopoiesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669625.1 True 1213 mRNA 0.41 5 13369294 13373938

Neighbor

gene id symbol gene type direction distance location
LOC103026589 LOC108429520,LOC108271303 coding downstream 567111 12756679 ~ 12802183 (-)
atpaf1 atpaf1 coding downstream 624587 12733591 ~ 12744707 (-)
LOC103027359 LOC103027359,LOC108429523,LOC107653655,LOC107592692,LOC107669838,LOC108270584,LOC103369105 coding downstream 637442 12719795 ~ 12731852 (-)
LOC103026065 nrdc,LOC108429524,LOC108271269,LOC106613566 coding downstream 653104 12675509 ~ 12716190 (-)
axdnd1 NA coding downstream 695537 12657387 ~ 12673757 (-)
tal1 tal1 coding upstream 7161 13381099 ~ 13391023 (-)
ier5 ier5 coding upstream 74654 13448592 ~ 13450507 (-)
kiaa1614 LOC107588106,LOC107592730 coding upstream 101156 13475094 ~ 13505789 (-)
LOC103033151 LOC108429511,LOC100711005,LOC102215641,LOC103357413,LOC103137085,LOC103463808,LOC101481666 coding upstream 152404 13526342 ~ 13536029 (-)
ankrd29 ankrd29,LOC107731532,LOC107653646,LOC107715109,LOC107669827 coding upstream 163687 13537625 ~ 13551388 (-)
G42261 NA non-coding downstream 110581 13254322 ~ 13258713 (-)
G42244 NA non-coding downstream 269915 13095821 ~ 13099379 (-)
G42229 NA non-coding downstream 426137 12889778 ~ 12943157 (-)
G42125 NA non-coding downstream 613177 12755792 ~ 12756117 (-)
G42113 NA non-coding downstream 684524 12683532 ~ 12684770 (-)
G42281 stx6,LOC107715114,LOC107669815,LOC107653648,LOC107731540 non-coding upstream 79619 13453557 ~ 13456518 (-)
G42289 NA non-coding upstream 135127 13509065 ~ 13517613 (-)
G42308 ttc39c,LOC108429509,LOC108241210,LOC104968120 non-coding upstream 225556 13599494 ~ 13599956 (-)
G42316 NA non-coding upstream 246936 13620874 ~ 13622023 (-)
G42318 NA non-coding upstream 249387 13623325 ~ 13623672 (-)
tm2d1 tm2d1,LOC107669801,LOC107653653,LOC107715116,LOC106574044,LOC107731529 other downstream 206489 13142373 ~ 13162805 (-)
nr2c2ap nr2c2ap,LOC107554809,LOC107687739,LOC107728548 other downstream 1596192 11767698 ~ 11773102 (-)
borcs8 borcs8,LOC107599453,LOC107554813,LOC107728595 other downstream 1607033 11756447 ~ 11762261 (-)
mef2b mef2b other downstream 1637398 11720126 ~ 11731896 (-)
LOC103041480 NA other downstream 1690275 11618444 ~ 11679019 (-)
fam32a fam32a,LOC107757479 other upstream 929602 14303540 ~ 14305976 (-)
G42516 NA other upstream 961992 14335930 ~ 14339171 (-)
G42661 NA other upstream 1088735 14462673 ~ 14526890 (-)
G42712 LOC108438667,LOC105021477,LOC107674533 other upstream 1486616 14860554 ~ 14861338 (-)
socs7 socs7 other upstream 1575946 14949884 ~ 14966800 (-)

Expression


Co-expression Network