G42308 (ttc39c,LOC108429509,LOC108241210,LOC104968120)


Basic Information

Item Value
gene id G42308
gene name ttc39c,LOC108429509,LOC108241210,LOC104968120
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 13599494 ~ 13599956 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU56966
TCCTGTTTGACGAAGGAGAGTACAGCGAGGTAGACCTGGCAGTCAGCCACAATGATCTGCCTTTGGAGCCGGTCCACTACCGCCATCCCCGACCTCTGAGAGTCCATactgttCTTAATCTTTTTACGGATGGTCTCGATGACGCCAACGTTATCACTCTCGCACAGCTTCTCTGTGGTTCGCAGGTCATCACAAGCCATCTGCATCTTCTCCTCCTCAAACGTCATCATGGC

Function

symbol description
ttc39c Acts upstream of or within cilium assembly; determination of heart left/right asymmetry; and otolith morphogenesis. Is expressed in nervous system and trigeminal placode. Orthologous to human TTC39C (tetratricopeptide repeat domain 39C).

NR:

description
PREDICTED: tetratricopeptide repeat protein 39C isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56966 True 233 lncRNA 0.52 2 13599494 13599956

Neighbor

gene id symbol gene type direction distance location
ankrd29 ankrd29,LOC107731532,LOC107653646,LOC107715109,LOC107669827 coding downstream 48106 13537625 ~ 13551388 (-)
LOC103033151 LOC108429511,LOC100711005,LOC102215641,LOC103357413,LOC103137085,LOC103463808,LOC101481666 coding downstream 63465 13526342 ~ 13536029 (-)
kiaa1614 LOC107588106,LOC107592730 coding downstream 93705 13475094 ~ 13505789 (-)
ier5 ier5 coding downstream 148987 13448592 ~ 13450507 (-)
tal1 tal1 coding downstream 208471 13381099 ~ 13391023 (-)
LOC103034756 osbpl1a,LOC108429508,LOC108271178,LOC107592705 coding upstream 30265 13630221 ~ 13664887 (-)
lrrc39 lrrc39,LOC107592708,LOC107653639 coding upstream 72950 13672906 ~ 13679084 (-)
LOC103036543 NA coding upstream 80761 13680717 ~ 13683200 (-)
dbt dbt,LOC107715105,LOC107588055,LOC107669841,LOC107653638,LOC107592709 coding upstream 83339 13683295 ~ 13693366 (-)
dph5 dph5,LOC107715097,LOC106613590 coding upstream 292735 13892691 ~ 13913212 (-)
G42289 NA non-coding downstream 81881 13509065 ~ 13517613 (-)
G42281 stx6,LOC107715114,LOC107669815,LOC107653648,LOC107731540 non-coding downstream 142976 13453557 ~ 13456518 (-)
G42261 NA non-coding downstream 340781 13254322 ~ 13258713 (-)
G42244 NA non-coding downstream 500115 13095821 ~ 13099379 (-)
G42229 NA non-coding downstream 656337 12889778 ~ 12943157 (-)
G42316 NA non-coding upstream 20918 13620874 ~ 13622023 (-)
G42318 NA non-coding upstream 23369 13623325 ~ 13623672 (-)
G42353 NA non-coding upstream 29932 13629888 ~ 13630159 (-)
G42356 NA non-coding upstream 100034 13699990 ~ 13736438 (-)
G42375 NA non-coding upstream 191935 13791891 ~ 13795317 (-)
tm2d1 tm2d1,LOC107669801,LOC107653653,LOC107715116,LOC106574044,LOC107731529 other downstream 436689 13142373 ~ 13162805 (-)
nr2c2ap nr2c2ap,LOC107554809,LOC107687739,LOC107728548 other downstream 1826392 11767698 ~ 11773102 (-)
borcs8 borcs8,LOC107599453,LOC107554813,LOC107728595 other downstream 1837233 11756447 ~ 11762261 (-)
mef2b mef2b other downstream 1867598 11720126 ~ 11731896 (-)
LOC103041480 NA other downstream 1920475 11618444 ~ 11679019 (-)
fam32a fam32a,LOC107757479 other upstream 703584 14303540 ~ 14305976 (-)
G42516 NA other upstream 735974 14335930 ~ 14339171 (-)
G42661 NA other upstream 862717 14462673 ~ 14526890 (-)
G42712 LOC108438667,LOC105021477,LOC107674533 other upstream 1260598 14860554 ~ 14861338 (-)
socs7 socs7 other upstream 1349928 14949884 ~ 14966800 (-)

Expression


Co-expression Network