LOC103026065 (nrdc,LOC108429524,LOC108271269,LOC106613566)


Basic Information

Item Value
gene id LOC103026065
gene name nrdc,LOC108429524,LOC108271269,LOC106613566
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 12675509 ~ 12716190 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670151.1
TGCTGCTggattgggacacagccggagCAGCACTAAACTGGGGCAGGTGAACCGGTCGCTTCGCGGCTCGTTTTTGTGCCGCGAACAAGAGActtttttttgagtgttttaACTTTAGATCTATTCTGAGACTTCCTTAATGTCCTGGTTACCGAGCAAACGAGTCAACAAAACGAAAACACATTCTCAGCGCTTTATTTAAAAGCGTTTGTCAAAGCCCTAAGAAACAAGAACAGCTCGTGTTCGCTCAACCAATCAGACGCTCGTCTGTTACTGCGTCTGCgtttctcagccaatcaaatcaTCCCGTACTGAGTGGATCCCCGAACACCGGCGCCTGTTGCTGACGTTCACAAACCTCCAGACATGCCtcagaaaaataaatctaatttctCCAGTGGAACAGTTCAAGCAGCTGTGCCTGACAGTGGGGAGCCACCACCAACGCCAGAGCCAAGAGCTTCACTGACCTCTGGGGACAATGTAGAGGCAGCAGAAAAAGAGCTTGAGGACCTGCAGATAATCAAATCACCCAGTGACCCAAAGAAGTACAGGTACATTGAGCTCAACAATGGACTGAAAGCACTGCTCATCTCAGACCAGAGCCGAGAGCACAGCACAAATAACTCTGAGCAGCCAGGAACAGAAGAAGCTGAAAAGGATGACAGTGAGGAAGATGAAGAGGAGGGTGGGAGTTCTGAGGAAGAGGAACATGACAGCAGTGAACATGGTGAGGATAGTAAGGGCTCTGATGAGAGCTGTGAAGTAAGGACGAAAAAGAAGGCAAGCTCAGAGAAACAGTCAGCAGCTgctctgtgtatctgtgtgggaAGCTTCAGTGATCCTGAGGATCTGCCTGGTCTGGCCCACTTCCTTGAGCACATGGTGTTCATGGGCAGTGAGAAGTACCCAGCTGAAAATGGTTTTGATGCATTTCTGAAGAAACACGGGGGCAGTGACAATGCTTCTACAGACTGCGAGAGGACCATCTTTCAGTTTGATGTTCAGAGGAAGTACTTCAGAGAGGCTCTGGATAGGTGGGCACAGTTCTTCATCTGTCCTCTGATGATAGAGGACGCTATTGACAGGGAGGTGGAAGCCGTTGATAGTGAATACCAGTTAGCCAGACCGTCAGACTCCCATCGCAAAGAAATGCTTTTTGGAAGCCTTGCAAAGCCCAACCACCCAATGACTAAGTTCTGCTGGGGAAATGCCCAAACTCTGAAGCACGAACCAAaggaaaataagataaatactTATGAGCGTCTGCGGGAATTCTGGAAGAGATACTACTCTGCACATTACATGACCCTCACTGTTCAATCCAGAGAGACTCTGGACACTTTAGAGGAATGGGTGAGGGAGATCTTCATCAAGGTCCCCAACAATGGTCAGCCTCGGCCTGATTTTTCAAACCTTCAGGACCCGTTTAATACACCAGATTTCAACAAACTTTACAGAGTGGTTCCTGTGAGAAAAATCCACGCTCTCACCATCAGCTGGGCTTTACCTCCTCAGGACAAACATTACAGAGTCAAGCCTTTGCACTACATATCCTGGCTGATTGGCCACGAGGGTGCTGGCAGTATTCTCTCCGTGCTCAGAAAGAAgtgttggGCTCTGGCTCTGTTTGGAGGAAATAGTGAGACAGGTTTTGACCAGAACACCACCTACTCCATCTTCAGCATTTCCATCACCCTGACTGATGAGGGTTACCAGAACGTCTCCCAGATCGTCCACTTGGTGTTCCAATACCTGAAGATGCTTCAGAAACTTGGAACCCAGCAGAGGATTTATGAAGAAATCCAGAAAATCGAAGCCAATGAGTTTCATTATCAAGAACAGACGGATCCAATTGAGTTTGTGGAGACAATCTGTGAGAACATGCAGCTGTTCCCAAAGCAGGACTTCCTGTGTGGACACCAGCTCATGTTTGAATACAACCCAGAGgtGATCTCGCCTGCCCTAGCACTGCTGACTCCTGAGAGAGcgaacctgctgctgctgtctccgGAGCACGAGGGACGCTGCTTACTCAAGGAGAAATGGTTTGGCACTCAGTACAGCATGGAAGGTGGGGACcattatTTGCTGCTGAACCTGATTGTGGACTACCTGGCCGACTTCACTGCAGCTCCTGATGTGTTTAGCATGTTTGCTGAACAGCTGAAGAAGACTTACTTCAACATCCTCATCAAACCGGAGAGACTGGGAAAAGATGTGCGTCTGCAGATTCTAGAGCATTGCCGCTGGTCGGTCATCCAGAAGTACGAGGCCATCATGAAGAACCTCACTGTGGATGATCTTATGCAGTTTGTTACTAAATTCAAGGCCAAGATGTTTGTGGAAGGGCTTGTGCAGGGGAACTTCACCAGTGCTGAATCCAAAGAGTTCCTGGAGTATTTTGTTGAgaGACTTCAGTTTAAGCCTCTGGAGGCTGAACCTCCTGTTCTCTTTCGTGTGGTGGAACTCCCACAGAAGCATCACCTGTGTAAAGTCCAGTCCCTCAACAAAAGCGACGCCAACTCTGAGGTCACCGTTTATTATCAGTCTGGGCTCAAGAACCTTCGAGAGCACACGCTGATGGAGCTGCTAGTGATGCACATGGAGGAACCCTGCTTTGATTTTCTGAGGACTAAAGAAACTCTGGGGTATCAGGTGTACCCCACCTGCAGAAACACCTCCGGTGTCCTTGGCTTCTCAGTTACTGTAGAGACTCAGGCGACAAAGTTCAGCACAGACTTTGTGGAGAATAAGATTGAAGAGTTCCTGGTGAACTTTGGAGAGAAGCTGACCAACCTGACAGATGAAGCGTATCAGGCACAGGTCACTGCTCTGATCAAGCTGAAGGAGTGTGAGGACACACACCTCGGGGAGGAGGTAGACAGGAGCTGGTTTGAGGTGGTGACTGAGCAGTATGTGTTTGATGGACTCAGCAAAGAGATTGAAGCTCTGAAGCAGATGACCAAAGCAGAGCTGCTGTCTTGGTTCATGGGGCACCGAGGTGCAGAGGGCAGGAAGCTCAGCGTTcatGTTGTTGGTTTCGGTAAAGAGGAGAACAACCAGCCTGAAGATGACCAGACCTGTCTTAATCCAGCAGAGAAAACCGAAGGCACTCCAGCCAAGTCTTCCTCATACGGAGAGGTGTCCAAACTCACCTTCCTGCCGCCCACGTCAGCCCTCGCTGGAGCCACCATGATCACCGACATCCGCGCTTTCACCTCCTCCCTCACGCTCCACCCTTACCACAAGATCCTCAGCTAGAGTAGGACTGTTTTTATCAGTCAGAGAAGAACTCAGGAAACCCTGCTCTGATGTACTCGCTCAAAGGGCTACCTCATATTTGAAGAACTGTGCAAgaattctcttttcttctttctattTAGTCCTGTAAAGAAGTGGTCACCAACTCCAACAAGGTAAAGGAGGTCATATCGGTCCTGGTGGTCCTAGTCCTTAAGGTTCTAGTCCTGGAGTGGAACAGTGGAACTTCAGTATACAAGGGATTCaaataagtattaaaaaaataacagtgctATACTGTGATGATGGttgttatatatacatatcataAAGGAACTGAGATGCAACATTGTTACTTTGAATGAATACCCTGCAGAAATCAAACACCAggttactgaataataataaaatgatgtcAGTACTGTCTGAATGTATGCAGAATGCCACTCATTACAATTATGAGTTGTTGCTTATGCAGGATATTTTACCTTGAACTCTGTTTTGAAGACGAATAAGCAGACAGTGTTCTCATGTTCTTATCACTGTAGAAGATAAGTGCAGGTCAGCAGTGCAAGCCTTACCTCTACTTTAACTGCTGTGGTGGTGTCTAGCATGTTTTAATTGTGTGTTTATTAATCAAGTGtacatatttaataaatgtgtgACTGAGGACTGA

Function

symbol description
nrdc Predicted to enable peptidase activity. Involved in positive regulation of membrane protein ectodomain proteolysis and regulation of endopeptidase activity. Located in mitochondrion.

NR:

description
PREDICTED: nardilysin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670151.1 True 3919 mRNA 0.47 28 12675509 12716190

Neighbor

gene id symbol gene type direction distance location
axdnd1 NA coding downstream 1752 12657387 ~ 12673757 (-)
tdrd5 NA coding downstream 21790 12636803 ~ 12653719 (-)
fam163a fam163a coding downstream 48785 12601517 ~ 12626724 (-)
rabgap1l rabgap1l,LOC106574055,LOC106613570,LOC107715121,LOC107728556 coding downstream 86461 12438874 ~ 12589048 (-)
gpr52 gpr52,LOC107715120,LOC107655251,LOC107599442,LOC107592687 coding downstream 137861 12532837 ~ 12537648 (-)
LOC103027359 LOC103027359,LOC108429523,LOC107653655,LOC107592692,LOC107669838,LOC108270584,LOC103369105 coding upstream 3605 12719795 ~ 12731852 (-)
atpaf1 atpaf1 coding upstream 17401 12733591 ~ 12744707 (-)
LOC103026589 LOC108429520,LOC108271303 coding upstream 40489 12756679 ~ 12802183 (-)
pdzk1ip1 pdzk1ip1 coding upstream 653104 13369294 ~ 13373938 (-)
tal1 tal1 coding upstream 664909 13381099 ~ 13391023 (-)
G42071 NA non-coding downstream 40703 12634443 ~ 12634806 (-)
G42069 NA non-coding downstream 42042 12632814 ~ 12633467 (-)
G42063 NA non-coding downstream 51019 12594615 ~ 12624490 (-)
G42061 NA non-coding downstream 151943 12522989 ~ 12523566 (-)
G42044 rab11b,LOC108429533,LOC107599444,LOC108280567,LOC107655249,LOC102310619 non-coding downstream 231743 12368563 ~ 12443766 (-)
G42125 NA non-coding upstream 39602 12755792 ~ 12756117 (-)
G42229 NA non-coding upstream 173588 12889778 ~ 12943157 (-)
G42244 NA non-coding upstream 379631 13095821 ~ 13099379 (-)
G42261 NA non-coding upstream 538132 13254322 ~ 13258713 (-)
G42281 stx6,LOC107715114,LOC107669815,LOC107653648,LOC107731540 non-coding upstream 737367 13453557 ~ 13456518 (-)
nr2c2ap nr2c2ap,LOC107554809,LOC107687739,LOC107728548 other downstream 902407 11767698 ~ 11773102 (-)
borcs8 borcs8,LOC107599453,LOC107554813,LOC107728595 other downstream 913248 11756447 ~ 11762261 (-)
mef2b mef2b other downstream 943613 11720126 ~ 11731896 (-)
LOC103041480 NA other downstream 996490 11618444 ~ 11679019 (-)
LOC103040665 cilp2,LOC107728576,LOC107655229,LOC107687716,LOC107599460 other downstream 1205631 11437652 ~ 11469878 (-)
tm2d1 tm2d1,LOC107669801,LOC107653653,LOC107715116,LOC106574044,LOC107731529 other upstream 426183 13142373 ~ 13162805 (-)
fam32a fam32a,LOC107757479 other upstream 1587350 14303540 ~ 14305976 (-)
G42516 NA other upstream 1619740 14335930 ~ 14339171 (-)
G42661 NA other upstream 1746483 14462673 ~ 14526890 (-)
G42712 LOC108438667,LOC105021477,LOC107674533 other upstream 2144364 14860554 ~ 14861338 (-)

Expression


Co-expression Network