rabgap1l (rabgap1l,LOC106574055,LOC106613570,LOC107715121,LOC107728556)


Basic Information

Item Value
gene id rabgap1l
gene name rabgap1l,LOC106574055,LOC106613570,LOC107715121,LOC107728556
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 12438874 ~ 12589048 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252655.3
CAGTAAATCGCTGACcggagctgtgtgtgtttctactGTGGTGGAGCAGGAGCTTCCCCCGCTGACTGTCACTCCGTTCCCGCAGCACAAACTCCTTTAAACCAAGTCTGCAGCAGAGGTGGGCCGATAGGGCGCATTGTCCCTGGCAATCATGGATGACCGCTCTTCTCTGGGCAAAGTGGGCGGTTCCACTGAATCTGTGTCCACAGTCACCAGTGAGGAGTTTGTGCTGGTGCAGCCTGGAGCTGAGGGCTCTCCATCCAGCTCAGAAGGCAGACCAAGGCTCAAGATGTCGTGGAATGGAAGTGAGCAGCTGGAGAGGGCAATGGAGGAGGTATTGGAGGATGAGCTGgggagagaagaaagaagaggGACGCCAGAAGAGCCTAGAGAGAGCTCACAGGACTTAGAAACCATCCCAGCACCCAGGTCACAGAAACAACCTCCTAGCCTGGTGCTGAATACAGCATCTAGTGAAGCGTCAGTGAGCACGTTGGGCAGTCCTGTTGTTCCAGAGGAGGACAGTGTTCAGTTCAGTAAGCTGTCTTACCTGGGCTGTACCTGGGTAAAAGCCCCACGCAGTGAGGTTGAGGCTCAGAAGGCCATGGCCACCCTGCGTGCTGAGAGTCCCGGCCATATCCCCGTCACTCTTCATGTACCCAACGGTCCAGACGGCTGTGTTAGGATTGTTGACCAAGCCACTGGTACAGAGATAGCCTCCTTTCCCATCTATAAAGTGCTGTTTTGTGCCCGAGGGAAAGAGGGTTCATTAGAAAGTGACTGCTTCTCCTTCACTGAGAGCTACCGCAGCTCAGAGGACTTCCAGATTCACGTCTTTTCCTGCCATATCAAAGAGGCTGTGAGCCGAATTCTCTACAGCTTCTCCACAGCGTTTAAGCGTTCATCTAAAGCTGCTACTGATGTTCGTGACTCATCCCTGCCTCAGTCCCCTGACAGCGATATTTTCGCTTTCACAGTGTCTCTGGAGGTGCGAGAGGATGACAGTAAAGGCAACTTCAGCCCTGTCCCTAAAGACAGAGACAAGTACTACTTTAAGCTGCGTCAAGGCGTGCAGAAGAAAGTGGTGGTCACAGTGCAGCAGATGTCCAACAAGGAACTGGGTATAGAGAGGTGTTTTGGCATGTTGCTCAGTCCTGGACAGAAGGTTCGGAATAGTGACATGCACCTCTTAGACATGGAGTCCATGGGGAAGAGCGCAGATGGGAAGGCCTATGTGATCACTGGAACGTGGAACCCCAATACACCTGCTTTTCAAGCACTTAATGAGGACACACCAAAAGACAAGCAGGTGTATCTCACAGTGGCTGTGGACCTGGTGGTGACTGAGGTGGTTGAGCCGGTTCGGTTCCTCCTGGAGGCTTTAGCCAGGGTGTATCCAGCCAACGAGAGGTTCTGGTACTTCAGCAGAAAGACCTTTTCTGAGACGTTTTACCTTCAGCTCAAACAGggCATTGAGAAGGGCAGCCAGGGAGATGCTATGTTTGAGGTGGTGAGCCTCCAGAGGCACTCTGAGCGGGTTGGAGGAGCGCGAGGCCGACTGCAGTCCCCCACTGAGGAAGAGGAGCAGGAGGAAGATAGTGACAGTGAAATCTCCAGTGGTACTGGCGATGTGTCTAAAGACTGCCCTGAGAAGATTCTGGAGTCCTGGGGTGGAATTCTCAACAGATGGCACGGGAACCTGTCCGCTCGGCCTAAGGGGCTGTCTGCACTGGTGAGGCCCGGAGTCCCCGAGGCGCTTCGGGCTGAAGTCTGGCAGCTCCTCTCCGGATGCCAGGACGACCAGTTCCTGCTGGAGCGCTACCGCATTCTCATCACTAAGGACTCGGCGCAGGAGGGAGTTATCACCAGAGACATCCACCGCACGTTTCCTGCTCATGACTACTTTAAGGACTCAGAGGGTGATGGCCAAGACTCCCTTTACAAGATCTGTAAGGCTTACTCTGTGTATGATGAGGAGATTGGATATTGTCAAGGCCAGTCGTTCCTGGCTGCAGTTCTTCTGTTGCATATGCCAGAAGAGCAGGCGTTCTGTGTGCTGGTGAAGATCATGTACGAGTATGGACTCAGGGATCTCTACAAGAACAACTTTGAGGATCTGCACTGCAAGTTCTACCAGCTGGAGCGTCTGATACAGGAGCAGTTACCGGAGCTGTGGTCGCACTTCCAAGATATGAATCTGGAGGCTCATATGTATGCGTCGCAGTGGTTCCTCACACTCTTCACTGCCAAGTTCCCGCTGTGCATGGTCTTCCACATTACAGACCTGTTGCTCTGTGAGGGCTTGAATATCATCTTCAATGTGGCACTGGCTCTACTAAAGACCTCCAAAGAGGACCTGCTCCAGGCTGACTTTGAAGGCGCCCTGAAGTTTTTCCGAGTTCAGCTCCCCAAGCGCTACAGATCGGCAGAAAACGCTCGCAGACTTATGGAGCAGGCCTGCAACATCAAGGTGCCGACTAAGAAGCTGAAGAAGTTTGAGAAGGAGTACCACACACTCCGAGAGAGCCAGCTCCAGCAGGAGGACCCCATAGACAGATATCAGaGAGAAAATCGACGTCTACAGGAAGCCAGCATGCGTTTGGAGCAGGAGAATGATGACCTCGCTCACGAGCTCGTCACCAGCAAGATAGCGCTGAGGAATGACCTGGACCAGGCGGAGGACAAGGCTGATGTGCTGAACAAAGAGCTGCTGAACACCAAGCAGAGGCTGGTGGagacagaggaggagaagagaagacagGAGGAAGAGACGGCTCAGTTAAAGGAAGTGTTTCGGAGAGAGCTGGAGAAAGCAGAGAGTGAGATTAAGAAGACGACAGCCATTATTGCAGAGTACAAACAGATTTGCTCTCAGCTGAGCACCAGACTGGAGAAGCAGCAGGCCGCCACCAAAGAGGAGCTGGATTTAGTCAAGAGTAAAGTGATGTCATGTGAGCGTTGTAGGGAAGTGTTCAATAAGGATGGGCCGCTGCACATGCCCGCAGTGACGCAGGATAACCGTGACACGGACGTAGACGAGGAGAAGGACTCTCTGAAGGCGCAGCTTCGAGAGCTGGAACTGGAACTGGCCCAGACCAAACTGCAGCTTGTAGAGGCAAAGTGCAGGATCCAGGAGCTGGAGCACCAGAGAGGAGTGTTGATGAACGAAGTCCAAGCTGCCAAAAACTCCTGGTTCAGTAAAACACTGGGATCCCTCAAGACTTCAGCAAGCAGTCAGCCGCCCTCCTCACCCAAAGAGGGCCAGTAGGACTCGTACAGGCCTCAGCCAATGAGGAGAGAGCAGATCAGATCCTCTGCCAGGCCAGTGCGAAAGGAGTCGAGGCCTACAGAACACTActaaacaacacaaacacagcaatGCAGTATTCCCTCTCACAGTggaacagcagagaaacacaatgCGAGCACCTGAACCCATCTATCTCTTCAGGCAGGAGGAGGACCACTGGTGGAATACGGCTACCATCACCCACAGGTTTATGTGCTTTCTCAGTCGTGTGTGCAGTCAGGTCATTCGGTTGGTTGactttggtttgtttgtggaaacatttttttgacATGGTCAAgcagttttaaaaataactttcattttaattatatgaAGCACATTTTGAGGAAGTTACACTGGAGAATTAAAAATCTACATTTTAACTTAGAATGATGAAAATAAAAGACTGAAGGATAAATATACAGATAAAAACATATTATGGACAAATAGAAAACATAATAGATAAAGTTATGGATCTATTAGAAGTGCAGCATTTGGTTAT
>XM_007252656.3
TCAGTAAATCGCTGACcggagctgtgtgtgtttctactGTGGTGGAGCAGGAGCTTCCCCCGCTGACTGTCACTCCGTTCCCGCAGCACAAACTCCTTTAAACCAAGTCTGCAGCAGAGGTGGGCCGATAGGGCGCATTGTCCCTGGCAATCATGGATGACCGCTCTTCTCTGGGCAAAGTGGGCGGTTCCACTGAATCTGTGTCCACAGTCACCAGTGAGGAGTTTGTGCTGGTGCAGCCTGGAGCTGAGGGCTCTCCATCCAGCTCAGAAGGCAGACCAAGGCTCAAGATGTCGTGGAATGGAAGTGAGCAGCTGGAGAGGGCAATGGAGGAGGTATTGGAGGATGAGCTGgggagagaagaaagaagaggGACGCCAGAAGAGCCTAGAGAGAGCTCACAGGACTTAGAAACCATCCCAGCACCCAGGTCACAGAAACAACCTCCTAGCCTGGTGCTGAATACAGCATCTAGTGAAGCGTCAGTGAGCACGTTGGGCAGTCCTGTTGTTCCAGAGGAGGACAGTGTTCAGTTCAGTAAGCTGTCTTACCTGGGCTGTACCTGGGTAAAAGCCCCACGCAGTGAGGTTGAGGCTCAGAAGGCCATGGCCACCCTGCGTGCTGAGAGTCCCGGCCATATCCCCGTCACTCTTCATGTACCCAACGGTCCAGACGGCTGTGTTAGGATTGTTGACCAAGCCACTGGTACAGAGATAGCCTCCTTTCCCATCTATAAAGTGCTGTTTTGTGCCCGAGGGAAAGAGGGTTCATTAGAAAGTGACTGCTTCTCCTTCACTGAGAGCTACCGCAGCTCAGAGGACTTCCAGATTCACGTCTTTTCCTGCCATATCAAAGAGGCTGTGAGCCGAATTCTCTACAGCTTCTCCACAGCGTTTAAGCGTTCATCTAAAGCTGCTACTGATGTTCGTGACTCATCCCTGCCTCAGTCCCCTGACAGCGATATTTTCGCTTTCACAGTGTCTCTGGAGGTGCGAGAGGATGACAGTAAAGGCAACTTCAGCCCTGTCCCTAAAGACAGAGACAAGTACTACTTTAAGCTGCGTCAAGGCGTGCAGAAGAAAGTGGTGGTCACAGTGCAGCAGATGTCCAACAAGGAACTGGGTATAGAGAGGTGTTTTGGCATGTTGCTCAGTCCTGGACAGAAGGTTCGGAATAGTGACATGCACCTCTTAGACATGGAGTCCATGGGGAAGAGCGCAGATGGGAAGGCCTATGTGATCACTGGAACGTGGAACCCCAATACACCTGCTTTTCAAGCACTTAATGAGGACACACCAAAAGACAAGCAGGTGTATCTCACAGTGGCTGTGGACCTGGTGGTGACTGAGGTGGTTGAGCCGGTTCGGTTCCTCCTGGAGGCTTTAGCCAGGGTGTATCCAGCCAACGAGAGGTTCTGGTACTTCAGCAGAAAGACCTTTTCTGAGACGTTTTACCTTCAGCTCAAACAGggCATTGAGAAGGGCAGCCAGGGAGATGCTATGTTTGAGGTGGTGAGCCTCCAGAGGCACTCTGAGCGGGTTGGAGGAGCGCGAGGCCGACTGCAGTCCCCCACTGAGGAAGAGGAGCAGGAGGAAGATAGTGACAGTGAAATCTCCAGTGGTACTGGCGATGTGTCTAAAGACTGCCCTGAGAAGATTCTGGAGTCCTGGGGTGGAATTCTCAACAGATGGCACGGGAACCTGTCCGCTCGGCCTAAGGGGCTGTCTGCACTGGTGAGGCCCGGAGTCCCCGAGGCGCTTCGGGCTGAAGTCTGGCAGCTCCTCTCCGGATGCCAGGACGACCAGTTCCTGCTGGAGCGCTACCGCATTCTCATCACTAAGGACTCGGCGCAGGAGGGAGTTATCACCAGAGACATCCACCGCACGTTTCCTGCTCATGACTACTTTAAGGACTCAGAGGGTGATGGCCAAGACTCCCTTTACAAGATCTGTAAGGCTTACTCTGTGTATGATGAGGAGATTGGATATTGTCAAGGCCAGTCGTTCCTGGCTGCAGTTCTTCTGTTGCATATGCCAGAAGAGCAGGCGTTCTGTGTGCTGGTGAAGATCATGTACGAGTATGGACTCAGGGATCTCTACAAGAACAACTTTGAGGATCTGCACTGCAAGTTCTACCAGCTGGAGCGTCTGATACAGGAGCAGTTACCGGAGCTGTGGTCGCACTTCCAAGATATGAATCTGGAGGCTCATATGTATGCGTCGCAGTGGTTCCTCACACTCTTCACTGCCAAGTTCCCGCTGTGCATGGTCTTCCACATTACAGACCTGTTGCTCTGTGAGGGCTTGAATATCATCTTCAATGTGGCACTGGCTCTACTAAAGACCTCCAAAGAGGACCTGCTCCAGGCTGACTTTGAAGGCGCCCTGAAGTTTTTCCGAGTTCAGCTCCCCAAGCGCTACAGATCGGCAGAAAACGCTCGCAGACTTATGGAGCAGGCCTGCAACATCAAGGTGCCGACTAAGAAGCTGAAGAAGTTTGAGAAGGAGTACCACACACTCCGAGAGAGCCAGCTCCAGCAGGAGGACCCCATAGACAGATATCAGTTCCAGACCGTGTAGAGATCTGCGGCGAGCACAGCAGGCTGCATGTCACGGAGCATGTTCTCAAAAGAGGGACAATTACTCaagctttttgtttttgggACGGAGGTCAGACATGTCCCGTTTGTTGTTGGTTTATAAAACTTTGAGATCTGGAAATGATTTCCTTATTCATCTTTACTGACTTGTGTTAGTTTTGCTCGAAGGATTGTGTGATGATACTGACagctttgttttaatttaattgattttaataatttatttttatgttttgacgAATATTTTTCACTATTAAGCTACAAGAATAAGATATAGTTTCAAAGGCAGCTATTATGGGAGAGCTGAATTAATCAGACACCATTTCAGACTATGTTTACAACATTTGTGTTTGTACTATGATTGTGAAACgatgtggatttttttattataattgtttaaaacaaatctaaaatatatttttatagaattATCTTTGTTTGTAAAAGCATGTATGCTTTGGTGGGTATTCGTTACTTGCTTTAATAGTTTGttatatttaaactatttttggCATGGGtccctgttctgtgtgtgaatGCTAATGTtaagttttataattttttaatgtgttgtaataataaaaatcaggtTTAATTGGTTTAACTGTAA
>XM_007252657.3
gcacacatacacatacacgtGTGCTCTGGACcctgtacacatacacacacagagaaacacacatacacacactctggaAAGATGATGGAGGAAGTGTCTATCACGGTGGCCTATGATGCCCACGTTATCAACCAGATCAGTGAGGAGGATATCTTCGCCAGTCTGGTGGCAGATTCCAGACCCAAGCCAGCGGTGCCGACTAAGAAGCTGAAGAAGTTTGAGAAGGAGTACCACACACTCCGAGAGAGCCAGCTCCAGCAGGAGGACCCCATAGACAGATATCAGaGAGAAAATCGACGTCTACAGGAAGCCAGCATGCGTTTGGAGCAGGAGAATGATGACCTCGCTCACGAGCTCGTCACCAGCAAGATAGCGCTGAGGAATGACCTGGACCAGGCGGAGGACAAGGCTGATGTGCTGAACAAAGAGCTGCTGAACACCAAGCAGAGGCTGGTGGagacagaggaggagaagagaagacagGAGGAAGAGACGGCTCAGTTAAAGGAAGTGTTTCGGAGAGAGCTGGAGAAAGCAGAGAGTGAGATTAAGAAGACGACAGCCATTATTGCAGAGTACAAACAGATTTGCTCTCAGCTGAGCACCAGACTGGAGAAGCAGCAGGCCGCCACCAAAGAGGAGCTGGATTTAGTCAAGAGTAAAGTGATGTCATGTGAGCGTTGTAGGGAAGTGTTCAATAAGGATGGGCCGCTGCACATGCCCGCAGTGACGCAGGATAACCGTGACACGGACGTAGACGAGGAGAAGGACTCTCTGAAGGCGCAGCTTCGAGAGCTGGAACTGGAACTGGCCCAGACCAAACTGCAGCTTGTAGAGGCAAAGTGCAGGATCCAGGAGCTGGAGCACCAGAGAGGAGTGTTGATGAACGAAGTCCAAGCTGCCAAAAACTCCTGGTTCAGTAAAACACTGGGATCCCTCAAGACTTCAGCAAGCAGTCAGCCGCCCTCCTCACCCAAAGAGGGCCAGTAGGACTCGTACAGGCCTCAGCCAATGAGGAGAGAGCAGATCAGATCCTCTGCCAGGCCAGTGCGAAAGGAGTCGAGGCCTACAGAACACTActaaacaacacaaacacagcaatGCAGTATTCCCTCTCACAGTggaacagcagagaaacacaatgCGAGCACCTGAACCCATCTATCTCTTCAGGCAGGAGGAGGACCACTGGTGGAATACGGCTACCATCACCCACAGGTTTATGTGCTTTCTCAGTCGTGTGTGCAGTCAGGTCATTCGGTTGGTTGactttggtttgtttgtggaaacatttttttgacATGGTCAAgcagttttaaaaataactttcattttaattatatgaAGCACATTTTGAGGAAGTTACACTGGAGAATTAAAAATCTACATTTTAACTTAGAATGATGAAAATAAAAGACTGAAGGATAAATATACAGATAAAAACATATTATGGACAAATAGAAAACATAATAGATAAAGTTATGGATCTATTAGAAGTGCAGCATTTGGTTAT
>XM_022669616.1
ttccTGGCGcgcgcacacatacacatacacgtGTGCTCTGGACcctgtacacatacacacacagagaaacacacatacacacactctggaAAGATGATGGAGGAAGTGTCTATCACGGTGGCCTATGATGCCCACGTTATCAACCAGATCAGTGAGGAGGATATCTTCGCCAGTCTGGTGGCAGATTCCAGACCCAAGCCAGCGGTGCCGACTAAGAAGCTGAAGAAGTTTGAGAAGGAGTACCACACACTCCGAGAGAGCCAGCTCCAGCAGGAGGACCCCATAGACAGATATCAGTTCCAGACCGTGTAGAGATCTGCGGCGAGCACAGCAGGCTGCATGTCACGGAGCATGTTCTCAAAAGAGGGACAATTACTCaagctttttgtttttgggACGGAGGTCAGACATGTCCCGTTTGTTGTTGGTTTATAAAACTTTGAGATCTGGAAATGATTTCCTTATTCATCTTTACTGACTTGTGTTAGTTTTGCTCGAAGGATTGTGTGATGATACTGACagctttgttttaatttaattgattttaataatttatttttatgttttgacgAATATTTTTCACTATTAAGCTACAAGAATAAGATATAGTTTCAAAGGCAGCTATTATGGGAGAGCTGAATTAATCAGACACCATTTCAGACTATGTTTACAACATTTGTGTTTGTACTATGATTGTGAAACgatgtggatttttttattataattgtttaaaacaaatctaaaatatatttttatagaattATCTTTGTTTGTAAAAGCATGTATGCTTTGGTGGGTATTCGTTACTTGCTTTAATAGTTTGttatatttaaactatttttggCATGGGtccctgttctgtgtgtgaatGCTAATGTtaagttttataattttttaatgtgttgtaataataaaaatcaggtTTAATTGGTTTAACTGTAA

Function

symbol description
rabgap1l Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Predicted to act upstream of or within positive regulation of GTPase activity. Orthologous to human RABGAP1L (RAB GTPase activating protein 1 like).

NR:

description
PREDICTED: rab GTPase-activating protein 1-like isoform X2

GO: NA

KEGG:

id description
K20284 RABGAP1, GAPCENA; Rab GTPase-activating protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252655.3 True 3791 mRNA 0.51 26 12438874 12589047
XM_007252656.3 False 3209 mRNA 0.49 21 12447531 12589048
XM_007252657.3 False 1513 mRNA 0.48 8 12438874 12454686
XM_022669616.1 False 942 mRNA 0.38 3 12447531 12454698

Neighbor

gene id symbol gene type direction distance location
LOC103045149 LOC108429540 coding downstream 297402 12121009 ~ 12141472 (-)
hapln4 hapln4,LOC107728536,LOC107599484,LOC107719665 coding downstream 326609 12101238 ~ 12112265 (-)
LOC111192506 LOC108429549,LOC108271147 coding downstream 838800 11564002 ~ 11600074 (-)
LOC103041169 yjefn3,LOC103041169,LOC108429551,LOC108271278 coding downstream 888625 11474848 ~ 11550249 (-)
LOC103040147 NA coding downstream 1053007 11374570 ~ 11385867 (-)
fam163a fam163a coding upstream 12469 12601517 ~ 12626724 (-)
tdrd5 NA coding upstream 47755 12636803 ~ 12653719 (-)
axdnd1 NA coding upstream 68339 12657387 ~ 12673757 (-)
LOC103026065 nrdc,LOC108429524,LOC108271269,LOC106613566 coding upstream 86461 12675509 ~ 12716190 (-)
LOC103027359 LOC103027359,LOC108429523,LOC107653655,LOC107592692,LOC107669838,LOC108270584,LOC103369105 coding upstream 130747 12719795 ~ 12731852 (-)
G42034 NA non-coding downstream 99252 12337646 ~ 12339622 (-)
G42031 NA non-coding downstream 110037 12328617 ~ 12328837 (-)
G42013 tjp3,LOC108429538,LOC108271152,LOC107728571,LOC107592677 non-coding downstream 168555 12248591 ~ 12270319 (-)
G41952 NA non-coding downstream 191367 12240715 ~ 12247507 (-)
G41928 NA non-coding downstream 340720 12049720 ~ 12098154 (-)
G42063 NA non-coding upstream 5567 12594615 ~ 12624490 (-)
G42069 NA non-coding upstream 43766 12632814 ~ 12633467 (-)
G42071 NA non-coding upstream 45395 12634443 ~ 12634806 (-)
G42113 NA non-coding upstream 94484 12683532 ~ 12684770 (-)
G42125 NA non-coding upstream 166744 12755792 ~ 12756117 (-)
nr2c2ap nr2c2ap,LOC107554809,LOC107687739,LOC107728548 other downstream 665772 11767698 ~ 11773102 (-)
borcs8 borcs8,LOC107599453,LOC107554813,LOC107728595 other downstream 676613 11756447 ~ 11762261 (-)
mef2b mef2b other downstream 706978 11720126 ~ 11731896 (-)
LOC103041480 NA other downstream 759855 11618444 ~ 11679019 (-)
LOC103040665 cilp2,LOC107728576,LOC107655229,LOC107687716,LOC107599460 other downstream 968996 11437652 ~ 11469878 (-)
tm2d1 tm2d1,LOC107669801,LOC107653653,LOC107715116,LOC106574044,LOC107731529 other upstream 553325 13142373 ~ 13162805 (-)
fam32a fam32a,LOC107757479 other upstream 1714492 14303540 ~ 14305976 (-)
G42516 NA other upstream 1746882 14335930 ~ 14339171 (-)
G42661 NA other upstream 1873625 14462673 ~ 14526890 (-)
G42712 LOC108438667,LOC105021477,LOC107674533 other upstream 2271506 14860554 ~ 14861338 (-)

Expression


Co-expression Network