LOC103041169 (yjefn3,LOC103041169,LOC108429551,LOC108271278)


Basic Information

Item Value
gene id LOC103041169
gene name yjefn3,LOC103041169,LOC108429551,LOC108271278
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 11474848 ~ 11550249 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252626.3
agagacagagagagaaagagagaaagaaaggagaggagagaggctCAGaggagagcgtgagagagatatagaggaagaaataaagaaacagagCAGGCTGACTGACTGGCGTAGGAGAATCTGCTGCTGAATCCCATCACCTGTATCCAGATCTTCACTGCCTCGTCAAGATGAACCACAGCTCCAGTGAAAAAGAGCCAGAGACCATAGAGCCCCTGCGCTACCTCAGtaaaacagaGATGGCTGCCATTGAAAATGAGCTGGTAAAGGATTATCGCTTTGGGCAGCAGCAGCTGATTGAGATGTGGGGTCATGCAAGTGCTCTCGCCATCACCAAAgccTATCCTCTGAGCTCCCTGACTAAGAAACAGCCCACAGTGCTGGTTATTTGTGGCCCGGACCAGAATGGCTCCATTGGGCTGGTGTGCGCTCGTCACCTGCGCATATTTgaGTACGAACCCACTATCTTTTATCCAAAGCGCTCTTCCCACAGCTTACATCAGGACTTCACCGTCCAGTGCGAGAAGATGGACATTCCCTTCCTCTCTTATCTTCCGACTGAGGTGCAGCTCATAAACGATGCCTATAATCTGGTGATTGACGCTATCCTGGGCCCAGAAACGGACCTGAAGGATGTGAAGGAGCCCTATTCTGGAATTTTGGTCACTCTGAAACAGGTGAAGATACCCATCGCCAGTGTGGACATGCCTTCAGGCTGGGACGTAGATGAAGCCAGTGAAGACGGGATAGCTCCAGAAGTTCTCATCTCGCTGACGGTCCCCAAAAAGTGCGCCACAAGTTTCTCTGGGAAGCACTTTTTGGCTGGACGCTTTCTTCCGTACGACATGCAGAAAAAATACGAACTCAACCTGCCCGAGTTTCCAGGCACAGAATGCCTTATAGAATTGTAACCCTTGCACTACAAAGTTCATATTTTGGATAAACAAGGATAAACTCTACTAaacttcttttgtattttataggTTGTTAGTGTGGTACATTGTTGTTTAGACTTACGTGCGCTGAGACTGTTGTGGTTGCAAATGCAATGTTTAGATACCGTGTGGAACTGAAGTTACTTTTTGTGTTTGCTTGAAAatggaatattttttatttttaagagaatGATGCACTTCAAATTTATCCCGGCTTTATTTCTTcattatgttcattttatttatttatttatagttaaaaaACATACCTATATTGAGAGTGTAAAGGCTGTAAATTTCTTAAAAACTGGttaaagcatttaaagcatCTATGATCCATCCacacatatctggatatatctaaaaaatataGGAATCTCCAACagcaattcagattttttttctgaggacacaaatgtgcaaatgcagtGTAAGGAAAAACTTTTGTTTGATGTCAGAGTTTTCAAAAAGCGGTGGTTTTGGTTTGATATGTGTGGATGGAAACTGAAAGCATTGATGGATTTGATAGATCCTCAGTTTTTAGTGTACTTCCATGGGCTGTTTTTTATAATAGCTGTAGTAAAAACTGTacattacagatttttttctttctttttcatttctaaaacttgaaaatgcttgaaaaCTAGCCACCTTGAAAGGCTCCACGTTATCCCAGCAGGCTGAAGCTAAACCCCTTTGTATGGTTAAATGGACCAGTGCATAGCTGTAGTTTGGATAGGTTGTATTTTAATGGCCATTTCAGACcctgaattccaaataaattctCTATGAAAACGTTAA

Function

symbol description
yjefn3 Predicted to enable NADHX epimerase activity. Involved in hematopoietic stem cell proliferation and regulation of Notch signaling pathway. Acts upstream of or within several processes, including membrane raft distribution; negative regulation of angiogenesis; and regulation of cholesterol efflux. Predicted to be active in mitochondrion. Is expressed in somite. Orthologous to human YJEFN3 (YjeF N-terminal domain containing 3).

NR:

description
yjeF N-terminal domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252626.3 True 1739 mRNA 0.42 6 11474848 11550249

Neighbor

gene id symbol gene type direction distance location
LOC103040147 NA coding downstream 88981 11374570 ~ 11385867 (-)
fstl3 fstl3,LOC107687713,LOC107728592,LOC107554822,LOC107569933,LOC107655223,LOC107719601 coding downstream 400013 11066044 ~ 11074835 (-)
LOC103035863 NA coding downstream 492061 10971381 ~ 10982787 (-)
ankmy1 NA coding downstream 504573 10939652 ~ 10970275 (-)
LOC103034388 NA coding downstream 722718 10749092 ~ 10752130 (-)
LOC111192506 LOC108429549,LOC108271147 coding upstream 13753 11564002 ~ 11600074 (-)
hapln4 hapln4,LOC107728536,LOC107599484,LOC107719665 coding upstream 550989 12101238 ~ 12112265 (-)
LOC103045149 LOC108429540 coding upstream 570760 12121009 ~ 12141472 (-)
rabgap1l rabgap1l,LOC106574055,LOC106613570,LOC107715121,LOC107728556 coding upstream 888625 12438874 ~ 12589048 (-)
gpr52 gpr52,LOC107715120,LOC107655251,LOC107599442,LOC107592687 coding upstream 982588 12532837 ~ 12537648 (-)
G41811 NA non-coding downstream 81110 11393452 ~ 11393738 (-)
G41809 cirbp,LOC107719610,LOC107655227,LOC107599461 non-coding downstream 103141 11336777 ~ 11371707 (-)
G41778 midn,LOC108429554,LOC108271022,LOC107687715,LOC107655225,LOC107599463,LOC107554818 non-coding downstream 242037 11197714 ~ 11232811 (-)
G41752 NA non-coding downstream 267424 11109916 ~ 11207424 (-)
G41755 NA non-coding downstream 370700 11103907 ~ 11104148 (-)
G41862 NA non-coding upstream 139654 11689903 ~ 11717048 (-)
G41864 tmem161a,LOC107599454,LOC107719614,LOC107728546,LOC107554814 non-coding upstream 147282 11697531 ~ 11703225 (-)
G41865 tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454 non-coding upstream 153942 11704191 ~ 11709303 (-)
G41876 NA non-coding upstream 201822 11752071 ~ 11752303 (-)
G41877 NA non-coding upstream 203199 11753448 ~ 11753747 (-)
LOC103040665 cilp2,LOC107728576,LOC107655229,LOC107687716,LOC107599460 other downstream 4970 11437652 ~ 11469878 (-)
G41767 atp5d,LOC102779772 other downstream 317013 11150669 ~ 11157835 (-)
G41763 cbarp other downstream 329687 11126385 ~ 11145161 (-)
LOC103036175 tpm4,tpm4a,LOC103036175,LOC108424981,LOC107561904,LOC107665514,LOC107715082,LOC107757474,LOC107653617 other downstream 458763 10985184 ~ 11016085 (-)
G41551 NA other downstream 1204028 10270336 ~ 10270820 (-)
LOC103041480 NA other upstream 68195 11618444 ~ 11679019 (-)
mef2b mef2b other upstream 169877 11720126 ~ 11731896 (-)
borcs8 borcs8,LOC107599453,LOC107554813,LOC107728595 other upstream 206198 11756447 ~ 11762261 (-)
nr2c2ap nr2c2ap,LOC107554809,LOC107687739,LOC107728548 other upstream 217449 11767698 ~ 11773102 (-)
tm2d1 tm2d1,LOC107669801,LOC107653653,LOC107715116,LOC106574044,LOC107731529 other upstream 1592124 13142373 ~ 13162805 (-)

Expression


Co-expression Network