G41752


Basic Information

Item Value
gene id G41752
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 11109916 ~ 11207424 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU56147
ctgtttttttAATTGCTGTGCGGTGCTGTAGACATGCTGTGAATGCAGTGAAAAGTCCTATCCCAGAGCTTCTCACTGCTGTTCTACAGCCTGGTTAGACCACTGCTCTGTTAGACCGTGTTCACTCATTCTGAGTGATGATGTATCCTTGACTTCCTGAAAGCCCAGAGTGCTGTTTTGATCATACAGCTAGTGTAGATCAAAACCTGACTGGTCGATTCTTCTGTCACTTGCTAATTACCTTGGTGGCAAGTCAGACGTGAAAGcccttgagttttttttttttatcctagcCAACCTAAACTAAAAGGAGAGCTTTTTTATTTCAATCAACTGTCAAAGATAATGTTCGGGATGCAGCTGATATATCCTTCCCAGCTATCAGTTACCTACAGTTCATAAAAAGATAGCATAACTCCTTGGCATTCTAAGGAAAAGCTTTTTAAAGAGGACAAAAATGCATATTAATGTTGTCTTTTACACCAAGCCCAAAACTAATAAACTGTGTTGGACGCATTTCTCATAATCTGCTCATATTCTGCATGGAATGAATGCATTAGTATCAGGCTGACCAACCAGAGATCTGATGTTGTGGTTACAGGCCAAACAAATGAGTATCAAAGTTAGTGGAAGAACAGCTCATCTTGTATGTTTTTAGGCATTACGTTTCTCTAGGTGCTTTCTAGTTTGTTCAACTATAGCTTCAAGCCTCATAATGTGTAGATTTTCCCCTCAGTAATTCAGTGTTAGTGGTAAAACACTTAACATTTAAGTATGCTTCTGTCTACAGCTGCGTTATGTGTCAACCATAtcaaaaaacacagattaataCTTAAAACTTATAAAGTGGATACAAAAAAAGATTGGTCAATCAGCCATTGCGTTTTCAGTCAATTAATACTTGTATCAGGTacataaaatgtgtgttttttctcataAAATTCACCCTATTCATTGTAGATCAAAATATAAGTGGTTCTTTCTTTAATTTGCTGTAATTACCTTGGTGGCTAGTTGGATGTGAAAGGCCTTGACTAATAACAGAGCTTGTTCCTTTCTGTCCACCTACATCTTATAGAGATGTCTGATTGAATCATAAAAAACGAAgacatatattaatatattggtCTTTCACACCAAGTCCAAAAATGATTCTTCAATTTTTCAGTCGAAGCCAACTCTATTTTCTTAGTGTATTATTACcaggctgaccaatcagagctctGCTATCATGTTTGCCGACCAAACAAACAAGCATGAAGGCATTTTACAGTTGAGTCAGTTAAACACAGATTAACTAAATCTAAAGAAATCCAGAAAAACCTATTAGCTATTGGCCTAttagcttttatatttttagccaATTAAAATCATCAATATCAGGTATTGGCCTCATGTTTTGGTTCGAAAGCATTAAAAACTTCTCCTTTCATGATCCCCCCACGTCTCCTCAAAAGTCAAGTCTTCACTCCCTAGACAGAACCAGGAAAGCAAGACCGATTTCAGAGTTGTACCGGGAGCGATACACTATAAACGTACAGTATAAAAGCACAACAGCGCCCCCCAGCAGGCTGTAGAGCAGTCTCCGTCAGTTTATTAGGTATAGAATCCAGTGGGGGAAGCTGAGTGGTTCCGTTTCGTGCGCTATCAAGTAGCCTGTCTAAAGCATTGATGCATTACTGTGCGTAGTTCTGCATGACATGAAGCTGTTTTAGTAAAGATGCTGTTTCTCAGATCTATGAATCAGAACCAAATTAGAAACTATTATCGTATGCTTATTCGCATAAAATGAATAGAAACGAGAATAATGTTCGTACTGACAGTTTTTACGTATTTTATGGAGTCTATTTATTTTAGGGGTACGCCTTGCTgactgaacagattttgctaaGATTATGTCCatggcaaaaaaatatatttcttttgcTAGAATATTTccatggaggaaaaaaaagagaatatttaTGTACAATTGCTTGAGATTTAAATTGCTCAGTTTAcagaagaagggaaaaaaacgATAGAAATAGAGTTTTCAGaacaatttacaatttttttgtttacctcGATTTGTTTACTCTGGATCTTTTAAGCCTTGAGGGACCAACCagtgtaaatgtttattttgggtTCATGTTTTCCAACTAGTCAATAAAGATTGATGCAT

Function

NR:

description
PREDICTED: polycystin-2 isoform X3

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU56147 True 2167 lncRNA 0.37 2 11109916 11207424

Neighbor

gene id symbol gene type direction distance location
fstl3 fstl3,LOC107687713,LOC107728592,LOC107554822,LOC107569933,LOC107655223,LOC107719601 coding downstream 35081 11066044 ~ 11074835 (-)
LOC103035863 NA coding downstream 127129 10971381 ~ 10982787 (-)
ankmy1 NA coding downstream 139641 10939652 ~ 10970275 (-)
LOC103034388 NA coding downstream 357786 10749092 ~ 10752130 (-)
LOC111192505 strc coding downstream 397323 10683736 ~ 10712593 (-)
LOC103040147 NA coding upstream 167146 11374570 ~ 11385867 (-)
LOC103041169 yjefn3,LOC103041169,LOC108429551,LOC108271278 coding upstream 267424 11474848 ~ 11550249 (-)
LOC111192506 LOC108429549,LOC108271147 coding upstream 356578 11564002 ~ 11600074 (-)
hapln4 hapln4,LOC107728536,LOC107599484,LOC107719665 coding upstream 893814 12101238 ~ 12112265 (-)
LOC103045149 LOC108429540 coding upstream 913585 12121009 ~ 12141472 (-)
G41755 NA non-coding downstream 5768 11103907 ~ 11104148 (-)
G41681 NA non-coding downstream 246007 10863609 ~ 10863909 (-)
G41670 NA non-coding downstream 353436 10756181 ~ 10756480 (-)
G41660 NA non-coding downstream 375650 10733329 ~ 10734266 (-)
G41651 NA non-coding downstream 378281 10651685 ~ 10731635 (-)
G41809 cirbp,LOC107719610,LOC107655227,LOC107599461 non-coding upstream 129353 11336777 ~ 11371707 (-)
G41811 NA non-coding upstream 186028 11393452 ~ 11393738 (-)
G41862 NA non-coding upstream 482479 11689903 ~ 11717048 (-)
G41864 tmem161a,LOC107599454,LOC107719614,LOC107728546,LOC107554814 non-coding upstream 490107 11697531 ~ 11703225 (-)
G41865 tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454 non-coding upstream 496767 11704191 ~ 11709303 (-)
LOC103036175 tpm4,tpm4a,LOC103036175,LOC108424981,LOC107561904,LOC107665514,LOC107715082,LOC107757474,LOC107653617 other downstream 93831 10985184 ~ 11016085 (-)
G41551 NA other downstream 839096 10270336 ~ 10270820 (-)
G41543 NA other downstream 884090 10163460 ~ 10225826 (-)
G41522 NA other downstream 1145954 9962615 ~ 9963962 (-)
G41514 fth1,LOC103039853,LOC100692258,LOC104919244,LOC103365615,LOC105892494,LOC101464185,LOC100304657,LOC100528068 other downstream 1156565 9946205 ~ 9953351 (-)
LOC103040665 cilp2,LOC107728576,LOC107655229,LOC107687716,LOC107599460 other upstream 230228 11437652 ~ 11469878 (-)
LOC103041480 NA other upstream 411020 11618444 ~ 11679019 (-)
mef2b mef2b other upstream 512702 11720126 ~ 11731896 (-)
borcs8 borcs8,LOC107599453,LOC107554813,LOC107728595 other upstream 549023 11756447 ~ 11762261 (-)
nr2c2ap nr2c2ap,LOC107554809,LOC107687739,LOC107728548 other upstream 560274 11767698 ~ 11773102 (-)

Expression


Co-expression Network