G41651


Basic Information

Item Value
gene id G41651
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 10651685 ~ 10731635 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU56014
TCCTCCAGAGTGAATTTATTGATTGTGTAGTCTATAAAATTCAAAAATTCCCAACCAATTACTTCAGTCTGTATGTCAGAATGAGCAGACAGCATGCATAGATTTATGCAAGCTCTCCATTGATCAAAGGCACTATATCGATCAGCTTCAGAATAACAGCACAGTCTCCACAATGACTGTCTGAACTCTTTATGCCTCGACAGTCCTgtgcatttctctctcttgctgaaATGTAAACATGCTTTAACTGCATGAGATAGATGTACAAATCTGTTGCAGATCAAATCAATCCATACAATGAACAATACTGAGTcatatattcagtgttttaacaGTGTATTAAGAGTGTATTTATATGCAATGCTGCTCataactatacagctctggaaaaacaattatgagaccacttcagtttctgaatcagtttctctgattttgctatttatagctatatgtttgagtaaaatgaacattgttgtttaattctataaactacggacatttctcccaaattccaaataaaaatattgtaatttagagcatttatttcctCAGAAATCAACatatggtggaataatcctgttttttaatcacaatttccatgcatcttggcatgttctcctccaccagtcttacacactgcttttggataactttatgccactcctggtgcaaaaattcaaacagttcagcttggtttgatggcttgtgatcatccatcttcctcttgattgtattccagaggtttttaatttggtaaaatcaaagaaaaacattattttaagtggtctcattttttttcagagctgtacatccaAATGCTTGTGTACAaaccttctaatgaatgcaatcagatactttaagttgcacccaatGCTGACACAGATATGCAAGACCCAGTAGAGAAGAACTGTTAATAGAGAATTAGACTCTCTGGAAGCAGGGCATGAGTTAGAGGGGTACTAATCCCCCAGAATTGAGGTGTGGAACAATGGAACTGTCTCTTCTCTAGAATGATGATGCTCCATCCACTActtttttgggatgagttgggagcaatcaaatcttcacagcaatgccTTAAATATAATCTAATAGAAAACATTGCCTCAACAGTAGAaaaagttactccaacaaaagcaggacttGCAGTGACGATGAACAATGAACAAATCAGGTGTCCCAAAACGTTTGGCCACATAGTGTATCATATGAAATTAGTaaacataacaaaaacaaatgcacATCATGTTCAAAATTAGAGCCTTTGATAGATCATCAGTTCaacataataaaactaaattaaaaaatgctaaCAATGAATTTAGGATTGCCGtacaatacaattttaaagacACACGGATTagactatatttaaaaaagtgatgCCATACTGTCTCAGCTAAAAGGATTCCACATAGTACTACAAACAGGGATCTCAGATTCAAAACAACAGTGCTTTTTAATGCTGTACAGAATCCCCTTGTTAAAGGTCCCGATTAGCAAAGTTCCTTCAGAGGTTTTCCTTGTTTTTCAAGAACATTGAGGACTGAAATGGTTCTTTGTGTCTTTAAAAGACCACAGTATTCATAAAAAACCCTTGaacaacacttaaaaaaaggaTTAGCAGAAGCATTCATGGTTCCTTAAACAGACATGTTTGAAAGTTTTAAAGATGGACGTTTTTCAAAATGCTCTGTATAAAAAATCTTGCGTGTACAAAATGTACTATCCACTCTGGAAACCCAGTGTCTCAAAACGGTAAtcaaagcaaaaatatattaaaaatacatatagaaATGACAAATAATCTCATCTTAAATATAGTTGGTATACCTAATATTTCTTATTCTGGAATTTGAGAATGTTGTgggattattaataaaataattttagatgttttatttcTAGAGGGCCCCTGTGATAAACATACTACGCATATTTGCTTTCCCCCCGCCCCAAGTCTGCACTGTGTAgttggcacactgtccacatCGATTAGGACTTCACATATGGAAAATATGCTGTAAAAAtcctgttttgtatttttgtagtaCAAAGTctgatgtaaaaaaaaagacttt
>TU56015
TCCTCCAGAGTGAATTTATTGATTGTGTAGTCTATAAAATTCAAAAATTCCCAACCAATTACTTCAGTCTGTATGTCAGAATGAGCAGACAGCATGCATAGATTTATGCAAGCTCTCCATTGATCAAAGGCACTATATCGATCAGCTTCAGAATAACAGCACAGTCTCCACAATGACTGTCTGAACTCTTTATGCCTCGACAGTCCTgtgcatttctctctcttgctgaaATGTAAACATGCTTTAACTGCATGAGATAGATGTACAAATCTGTTGCAGATCAAATCAATCCATACAATGAACAATACTGAGTcatatattcagtgttttaacaGTGTATTAAGAGTGTATTTATATGCAATGCTGCTCataactatacagctctggaaaaacaattatgagaccacttcagtttctgaatcagtttctctgattttgctatttatagctatatgtttgagtaaaatgaacattgttgtttaattctataaactacggacatttctcccaaattccaaataaaaatattgtaatttagagcatttatttcctCAGAAATCAACatatggtggaataatcctgttttttaatcacaatttccatgcatcttggcatgttctccttacacactgcttttggataactttatggcactcctggtgcaaacattcaagcagttca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56014 True 2084 lncRNA 0.35 2 10651685 10731635
TU56015 False 681 lncRNA 0.35 2 10666961 10731635

Neighbor

gene id symbol gene type direction distance location
fes fes,LOC107594730,LOC107733944,LOC107685217,LOC107600721 coding downstream 166079 10429430 ~ 10485606 (-)
LOC103032157 LOC108428495,LOC107662287,LOC107733936,LOC107594765,LOC107685235,LOC107600722,LOC108271109 coding downstream 248334 10397032 ~ 10403351 (-)
LOC103031839 LOC108271109,LOC105908091,LOC107722672,LOC107582811,LOC107667994 coding downstream 265424 10373862 ~ 10386261 (-)
LOC103034850 LOC108438683,LOC108270806 coding downstream 396946 10226396 ~ 10254739 (-)
LOC103035377 itgb6 coding downstream 436241 10178551 ~ 10215444 (-)
LOC103034388 NA coding upstream 17457 10749092 ~ 10752130 (-)
ankmy1 NA coding upstream 208017 10939652 ~ 10970275 (-)
LOC103035863 NA coding upstream 239746 10971381 ~ 10982787 (-)
fstl3 fstl3,LOC107687713,LOC107728592,LOC107554822,LOC107569933,LOC107655223,LOC107719601 coding upstream 334409 11066044 ~ 11074835 (-)
LOC103040147 NA coding upstream 642935 11374570 ~ 11385867 (-)
G41650 NA non-coding downstream 27066 10582450 ~ 10624619 (-)
G41649 NA non-coding downstream 129116 10522326 ~ 10522569 (-)
G41553 psmd14,psde,LOC107563735,LOC107716971 non-coding downstream 362027 10281426 ~ 10289658 (-)
G41540 NA non-coding downstream 619020 10031745 ~ 10032665 (-)
G41424 NA non-coding downstream 741409 9910046 ~ 9910276 (-)
G41660 NA non-coding upstream 1694 10733329 ~ 10734266 (-)
G41670 NA non-coding upstream 24546 10756181 ~ 10756480 (-)
G41681 NA non-coding upstream 131974 10863609 ~ 10863909 (-)
G41755 NA non-coding upstream 372272 11103907 ~ 11104148 (-)
G41752 NA non-coding upstream 378281 11109916 ~ 11207424 (-)
G41551 NA other downstream 380865 10270336 ~ 10270820 (-)
G41543 NA other downstream 425859 10163460 ~ 10225826 (-)
G41522 NA other downstream 687723 9962615 ~ 9963962 (-)
G41514 fth1,LOC103039853,LOC100692258,LOC104919244,LOC103365615,LOC105892494,LOC101464185,LOC100304657,LOC100528068 other downstream 698334 9946205 ~ 9953351 (-)
LOC103022371 b3g5a,LOC108439423 other downstream 1529257 9112078 ~ 9122428 (-)
LOC103036175 tpm4,tpm4a,LOC103036175,LOC108424981,LOC107561904,LOC107665514,LOC107715082,LOC107757474,LOC107653617 other upstream 253549 10985184 ~ 11016085 (-)
G41763 cbarp other upstream 394750 11126385 ~ 11145161 (-)
G41767 atp5d,LOC102779772 other upstream 419034 11150669 ~ 11157835 (-)
LOC103040665 cilp2,LOC107728576,LOC107655229,LOC107687716,LOC107599460 other upstream 706017 11437652 ~ 11469878 (-)
LOC103041480 NA other upstream 886809 11618444 ~ 11679019 (-)

Expression


Co-expression Network