LOC103036175 (tpm4,tpm4a,LOC103036175,LOC108424981,LOC107561904,LOC107665514,LOC107715082,LOC107757474,LOC107653617)


Basic Information

Item Value
gene id LOC103036175
gene name tpm4,tpm4a,LOC103036175,LOC108424981,LOC107561904,LOC107665514,LOC107715082,LOC107757474,LOC107653617
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 10985184 ~ 11016085 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU56095
GCAAGGCCAGTGATCTGGAGGAGGAGCTGAAAAACGTAACCAACAACCTCAAATCCTTAGAAGCTCAGgcagagaaaTACTcagaaaaagaagacaaataTGAAGAGGAGATCAAGGTCCTTAGTGATAAACTGAAGGAGGCTGAGACCCGCGCTGAGTTTGCAGAGAGAACAGTGGCCAAACTGGAAAAATCCATCGATGACTTGGAAGAAAAATTAGCAAGCGCCAAAGAAGAAAACCTCGGAATGCACCAAGTCCTGGACCAGACGCTCCAAGAGCTGAACAGCATATGAAGGGGGGATGGGCGAAGTTTCATCTTACAACATTCCATGAACATCCAGCATAATTCCATATCTCCCGCTATTCAAACCTGTTTCCTCACAGAggattaatttaatttgtccATAATATTTCATTTGTCACTTTACCCTCTTCTGTAACTCCCCCAGTGTTTGATGATCGGTGATGGTTGGCTGCTGAGGTGCTCACCAAGTGccctttatttttaccaaaaggcttttttttttaaagatgtgttTACATTATATGTGAAACATCCAAATTTCCTGCATGCAGTTTATTTTTCACACTCGCTGAGTGAACGGTGTGGTCAGATAGTCTGCCATCTGCTGGtcaatcaatggattttttttttgttgaatgaAGGTTGCATTTGAAGaattttattgtactttttattattataatttgggggggcttttttttattaattccatTTTTAAACCTACAGCAAAAAACAAGACTGAGGGACCAAAAGTAGTAAACTTTTAATATGCCAAATAAAACTGCCAAACATATCATGTGTAAATCAAACACCTCTATGGGTGCAAAGCTCTAGAGAGACTGGAAGTCAGTGCATGATGCCATCCAATACTCCACATGTAATACGGACCAAATTGTAATAATGCTCTGCATTGCTCTGTGCCTTTCTTAAACAAGTCTCTTCTTCACTTTCCAAGTAATAAA
>XM_007252610.3
ATAGCTAGCAGAGGGAGGGAGCTGGGAGCTGGCTACTTACTCTGGTCGGGTTCTGTACAGTCAGATCCAGCAGTGTGGTCAGCTTCGGCTTTGGGTTCGCATCAGCTGCATTCTCctccacttctctctctctctttctctttctctctctctctttagttgCAGCTCTCCTGTTCTTTCTCGCTTTCCTGAAGAAGGAGAAAACAGACTGCAGCATCTGCTTCACACTTGCTAAGTTCCTTGACCTAGTTGAAAACACAAATTATCACCATGGAGGCcatcaagaagaagatgcaGATGCTGAAGCTGGACAAGGAGAACGCCATCGACAGGGCGGAGCAGGCCGAGACGGAGCAGAAAGCAGCGGAGGACAGATGCAAACAGCTGGATGATGAGCTGATGGCCCTGCAGAAGAAGCTGAAGCAGACTGAAGATGAACTGGACAAGTACTCTGAGGCCCTGAAAGACGCTCAGGAGAAACTGGAACTTTCTGAAAAGAAAGCTGCTGATGCTGAAGGTGATGTGGCAGCGCTAAACCGCAGGATCcagctggtggaggaggagcttGACCGAGCCCAGGAGAGGCTGACCACTGCCCTGCAGAAACTGGAGGAGGCAGAGAAAGCAGCAGACGAGAGCGAGAGAGGAATGAAGGTGATCGAGAACCGTGCCATGAAGGATGAGGAGAAAATGGAGATCCAGGAGATGCAGCTAAAGGAGGCCAAGCACATCGCAGAGGAGGCTGACCGAAAATATGAGGAGgTGGCCCGTAAGCTTGTGATTCTCGAGGGTGAACTGGAACGAGCAGAGGAGAGAGCCGAGGTGTCCGAATGCAAGGCCAGTGATCTGGAGGAGGAGCTGAAAAACGTAACCAACAACCTCAAATCCTTAGAAGCTCAGgcagagaaaTACTcagaaaaagaagacaaataTGAAGAGGAGATCAAGGTCCTTAGTGATAAACTGAAGGAGGCTGAGACCCGCGCTGAGTTTGCAGAGAGAACAGTGGCCAAACTGGAAAAATCCATCGATGACTTGGAAGATGAGTTGTACGCTCAGAAGCTGAAATATAAGGCCATCTCGGAGGAGCTGGACCATGCCCTCAACGATATGACCTCCCTGTAGCTGCTGCCCTGTCTCCTCTCATGCCCTGCTGTctctctgctctgctggctctctctgtctctgctttCCTATTATGCAATGGAAAACTTAGTTTCAATAAAAGCTCTCTGTTTCCATTTC
>XM_007252611.3
AATAGCTAGCAGAGGGAGGGAGCTGGGAGCTGGCTACTTACTCTGGTCGGGTTCTGTACAGTCAGATCCAGCAGTGTGGTCAGCTTCGGCTTTGGGTTCGCATCAGCTGCATTCTCctccacttctctctctctctttctctttctctctctctctttagttgCAGCTCTCCTGTTCTTTCTCGCTTTCCTGAAGAAGGAGAAAACAGACTGCAGCATCTGCTTCACACTTGCTAAGTTCCTTGACCTAGTTGAAAACACAAATTATCACCATGGAGGCcatcaagaagaagatgcaGATGCTGAAGCTGGACAAGGAGAACGCCATCGACAGGGCGGAGCAGGCCGAGACGGAGCAGAAAGCAGCGGAGGACAGATGCAAACAGCTGGATGATGAGCTGATGGCCCTGCAGAAGAAGCTGAAGCAGACTGAAGATGAACTGGACAAGTACTCTGAGGCCCTGAAAGACGCTCAGGAGAAACTGGAACTTTCTGAAAAGAAAGCTGCTGATGCTGAAGGTGATGTGGCAGCGCTAAACCGCAGGATCcagctggtggaggaggagcttGACCGAGCCCAGGAGAGGCTGACCACTGCCCTGCAGAAACTGGAGGAGGCAGAGAAAGCAGCAGACGAGAGCGAGAGAGGAATGAAGGTGATCGAGAACCGTGCCATGAAGGATGAGGAGAAAATGGAGATCCAGGAGATGCAGCTAAAGGAGGCCAAGCACATCGCAGAGGAGGCTGACCGAAAATATGAGGAGgTGGCCCGTAAGCTTGTGATTCTCGAGGGTGAACTGGAACGAGCAGAGGAGAGAGCCGAGGTGTCCGAATGCAAGGCCAGTGATCTGGAGGAGGAGCTGAAAAACGTAACCAACAACCTCAAATCCTTAGAAGCTCAGgcagagaaaTACTcagaaaaagaagacaaataTGAAGAGGAGATCAAGGTCCTTAGTGATAAACTGAAGGAGGCTGAGACCCGCGCTGAGTTTGCAGAGAGAACAGTGGCCAAACTGGAAAAATCCATCGATGACTTGGAAGAAAAATTAGCAAGCGCCAAAGAAGAAAACCTCGGAATGCACCAAGTCCTGGACCAGACGCTCCAAGAGCTGAACAGCATATGAAGGGGGGATGGGCGAAGTTTCATCTTACAACATTCCATGAACATCCAGCATAATTCCATATCTCCCGCTATTCAAACCTGTTTCCTCACAGAggattaatttaatttgtccATAATATTTCATTTGTCACTTTACCCTCTTCTGTAACTCCCCCAGTGTTTGATGATCGGTGATGGTTGGCTGCTGAGGTGCTCACCAAGTGccctttatttttaccaaaaggcttttttttttaaagatgtgttTACATTATATGTGAAACATCCAAATTTCCTGCATGCAGTTTATTTTTCACACTCGCTGAGTGAACGGTGTGGTCAGATAGTCTGCCATCTGCTGGtcaatcaatggattttttttttgttgaatgaAGGTTGCATTTGAAGaattttattgtactttttattattataatttgggggggcttttttttattaattccatTTTTAAACCTACAGCAAAAAACAAGACTGAGGGACCAAAAGTAGTAAACTTTTAATATGCCAAATAAAACTGCCAAACATATCATGTGTAAATCAAACACCTCTATGGGTGCAAAGCTCTAGAGAGACTGGAAGTCAGTGCATGATGCCATCCAATACTCCACATGTAATACGGACCAAATTGTAATAATGCTCTGCATTGCTCTGTGCCTTTCTTAAACAAGTCTCTTCTTCACTTTCCAAGTAATAAATTTGTACAAAAACA
>XM_007252613.3
CCTTCTCAGCCCCACACACAGAATACAGCCCTAAATTCAATCAGACAAGACTCGCTTCCTTCgcatttttacacacatttctacTTTTTGCTCCTGTGAGCCGCAGTTTAACTCTGAAGTGGGAAATAAGAGCCGTGTTTACACTTTGTTTTTCGGTGTTTTTTTGTGGCACTCGACTTTTTTAAAGGACTATTTGTAATTTTTCATACAGACTGTGACTTAGGTCAGCTAAACTAACTTACTATTTATTATAAGTCATTTGCACGCAGCTCACgataagtgttttatattttttggggCTGAGAGAAAGCGGTAAACAGTAGAAAAGATGGCAGGTGTGACTTCTTTGGACGCCGTTAAGAGAAAGATCCAGAGTTTGCAGCAGCAGGCGGACGACGCGGAGGACCGAGCCCTAGTTTTACAAAGAGAGCTGGACAATGAACGGGAGCTGCGGGAGAAAGCTGAAGGTGATGTGGCAGCGCTAAACCGCAGGATCcagctggtggaggaggagcttGACCGAGCCCAGGAGAGGCTGACCACTGCCCTGCAGAAACTGGAGGAGGCAGAGAAAGCAGCAGACGAGAGCGAGAGAGGAATGAAGGTGATCGAGAACCGTGCCATGAAGGATGAGGAGAAAATGGAGATCCAGGAGATGCAGCTAAAGGAGGCCAAGCACATCGCAGAGGAGGCTGACCGAAAATATGAGGAGgTGGCCCGTAAGCTTGTGATTCTCGAGGGTGAACTGGAACGAGCAGAGGAGAGAGCCGAGGTGTCCGAATGCAAGGCCAGTGATCTGGAGGAGGAGCTGAAAAACGTAACCAACAACCTCAAATCCTTAGAAGCTCAGgcagagaaaTACTcagaaaaagaagacaaataTGAAGAGGAGATCAAGGTCCTTAGTGATAAACTGAAGGAGGCTGAGACCCGCGCTGAGTTTGCAGAGAGAACAGTGGCCAAACTGGAAAAATCCATCGATGACTTGGAAGATGAGTTGTACGCTCAGAAGCTGAAATATAAGGCCATCTCGGAGGAGCTGGACCATGCCCTCAACGATATGACCTCCCTGTAGCTGCTGCCCTGTCTCCTCTCATGCCCTGCTGTctctctgctctgctggctctctctgtctctgctttCCTATTATGCAATGGAAAACTTAGTTTCAATAAAAGCTCTCTGTTTCCATTTC
>XM_007252614.3
CCTTCTCAGCCCCACACACAGAATACAGCCCTAAATTCAATCAGACAAGACTCGCTTCCTTCgcatttttacacacatttctacTTTTTGCTCCTGTGAGCCGCAGTTTAACTCTGAAGTGGGAAATAAGAGCCGTGTTTACACTTTGTTTTTCGGTGTTTTTTTGTGGCACTCGACTTTTTTAAAGGACTATTTGTAATTTTTCATACAGACTGTGACTTAGGTCAGCTAAACTAACTTACTATTTATTATAAGTCATTTGCACGCAGCTCACgataagtgttttatattttttggggCTGAGAGAAAGCGGTAAACAGTAGAAAAGATGGCAGGTGTGACTTCTTTGGACGCCGTTAAGAGAAAGATCCAGAGTTTGCAGCAGCAGGCGGACGACGCGGAGGACCGAGCCCTAGTTTTACAAAGAGAGCTGGACAATGAACGGGAGCTGCGGGAGAAAGCTGAAGGTGATGTGGCAGCGCTAAACCGCAGGATCcagctggtggaggaggagcttGACCGAGCCCAGGAGAGGCTGACCACTGCCCTGCAGAAACTGGAGGAGGCAGAGAAAGCAGCAGACGAGAGCGAGAGAGGAATGAAGGTGATCGAGAACCGTGCCATGAAGGATGAGGAGAAAATGGAGATCCAGGAGATGCAGCTAAAGGAGGCCAAGCACATCGCAGAGGAGGCTGACCGAAAATATGAGGAGgTGGCCCGTAAGCTTGTGATTCTCGAGGGTGAACTGGAACGAGCAGAGGAGAGAGCCGAGGTGTCCGAATGCAAGGCCAGTGATCTGGAGGAGGAGCTGAAAAACGTAACCAACAACCTCAAATCCTTAGAAGCTCAGgcagagaaaTACTcagaaaaagaagacaaataTGAAGAGGAGATCAAGGTCCTTAGTGATAAACTGAAGGAGGCTGAGACCCGCGCTGAGTTTGCAGAGAGAACAGTGGCCAAACTGGAAAAATCCATCGATGACTTGGAAGAAAAATTAGCAAGCGCCAAAGAAGAAAACCTCGGAATGCACCAAGTCCTGGACCAGACGCTCCAAGAGCTGAACAGCATATGAAGGGGGGATGGGCGAAGTTTCATCTTACAACATTCCATGAACATCCAGCATAATTCCATATCTCCCGCTATTCAAACCTGTTTCCTCACAGAggattaatttaatttgtccATAATATTTCATTTGTCACTTTACCCTCTTCTGTAACTCCCCCAGTGTTTGATGATCGGTGATGGTTGGCTGCTGAGGTGCTCACCAAGTGccctttatttttaccaaaaggcttttttttttaaagatgtgttTACATTATATGTGAAACATCCAAATTTCCTGCATGCAGTTTATTTTTCACACTCGCTGAGTGAACGGTGTGGTCAGATAGTCTGCCATCTGCTGGtcaatcaatggattttttttttgttgaatgaAGGTTGCATTTGAAGaattttattgtactttttattattataatttgggggggcttttttttattaattccatTTTTAAACCTACAGCAAAAAACAAGACTGAGGGACCAAAAGTAGTAAACTTTTAATATGCCAAATAAAACTGCCAAACATATCATGTGTAAATCAAACACCTCTATGGGTGCAAAGCTCTAGAGAGACTGGAAGTCAGTGCATGATGCCATCCAATACTCCACATGTAATACGGACCAAATTGTAATAATGCTCTGCATTGCTCTGTGCCTTTCTTAAACAAGTCTCTTCTTCACTTTCCAAGTAATAAATTTGTACAAAAACA

Function

symbol description
tpm4a Predicted to enable actin filament binding activity. Acts upstream of or within cardiac muscle contraction and cardiac myofibril assembly. Predicted to be active in actin filament. Is expressed in several structures, including cardiovascular system; head mesenchyme; mesoderm; muscle; and thymus. Orthologous to human TPM4 (tropomyosin 4).
tpm4 Predicted to enable actin filament binding activity; protein heterodimerization activity; and protein homodimerization activity. Involved in osteoblast differentiation. Located in stress fiber.

NR:

description
tropomyosin alpha-1 chain isoform X2

GO:

id name namespace
GO:0055003 cardiac myofibril assembly biological_process
GO:0060048 cardiac muscle contraction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56095 False 987 lncRNA 0.40 4 10985198 10991078
XM_007252610.3 False 1245 mRNA 0.51 9 10986933 11016084
XM_007252611.3 True 1834 mRNA 0.45 9 10985184 11016085
XM_007252613.3 False 1195 mRNA 0.48 8 10986933 11006553
XM_007252614.3 False 1783 mRNA 0.43 8 10985184 11006553

Neighbor

gene id symbol gene type direction distance location
LOC103035863 NA coding downstream 2397 10971381 ~ 10982787 (-)
ankmy1 NA coding downstream 14909 10939652 ~ 10970275 (-)
LOC103034388 NA coding downstream 233054 10749092 ~ 10752130 (-)
LOC111192505 strc coding downstream 272591 10683736 ~ 10712593 (-)
LOC103024357 furina,LOC108428498,LOC108270701,LOC107737005,LOC107685214,LOC107733942,LOC107662279 coding downstream 303231 10494605 ~ 10681953 (-)
fstl3 fstl3,LOC107687713,LOC107728592,LOC107554822,LOC107569933,LOC107655223,LOC107719601 coding upstream 49959 11066044 ~ 11074835 (-)
LOC103040147 NA coding upstream 358485 11374570 ~ 11385867 (-)
LOC103041169 yjefn3,LOC103041169,LOC108429551,LOC108271278 coding upstream 458763 11474848 ~ 11550249 (-)
LOC111192506 LOC108429549,LOC108271147 coding upstream 547917 11564002 ~ 11600074 (-)
hapln4 hapln4,LOC107728536,LOC107599484,LOC107719665 coding upstream 1085153 12101238 ~ 12112265 (-)
G41681 NA non-coding downstream 121275 10863609 ~ 10863909 (-)
G41670 NA non-coding downstream 228704 10756181 ~ 10756480 (-)
G41660 NA non-coding downstream 250918 10733329 ~ 10734266 (-)
G41651 NA non-coding downstream 253549 10651685 ~ 10731635 (-)
G41650 NA non-coding downstream 360565 10582450 ~ 10624619 (-)
G41755 NA non-coding upstream 87822 11103907 ~ 11104148 (-)
G41752 NA non-coding upstream 93831 11109916 ~ 11207424 (-)
G41778 midn,LOC108429554,LOC108271022,LOC107687715,LOC107655225,LOC107599463,LOC107554818 non-coding upstream 181629 11197714 ~ 11232811 (-)
G41809 cirbp,LOC107719610,LOC107655227,LOC107599461 non-coding upstream 320692 11336777 ~ 11371707 (-)
G41811 NA non-coding upstream 377367 11393452 ~ 11393738 (-)
G41551 NA other downstream 714364 10270336 ~ 10270820 (-)
G41543 NA other downstream 759358 10163460 ~ 10225826 (-)
G41522 NA other downstream 1021222 9962615 ~ 9963962 (-)
G41514 fth1,LOC103039853,LOC100692258,LOC104919244,LOC103365615,LOC105892494,LOC101464185,LOC100304657,LOC100528068 other downstream 1031833 9946205 ~ 9953351 (-)
LOC103022371 b3g5a,LOC108439423 other downstream 1862756 9112078 ~ 9122428 (-)
G41763 cbarp other upstream 110300 11126385 ~ 11145161 (-)
G41767 atp5d,LOC102779772 other upstream 134584 11150669 ~ 11157835 (-)
LOC103040665 cilp2,LOC107728576,LOC107655229,LOC107687716,LOC107599460 other upstream 421567 11437652 ~ 11469878 (-)
LOC103041480 NA other upstream 602359 11618444 ~ 11679019 (-)
mef2b mef2b other upstream 704041 11720126 ~ 11731896 (-)

Expression


Co-expression Network