LOC103045149 (LOC108429540)


Basic Information

Item Value
gene id LOC103045149
gene name LOC108429540
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 12121009 ~ 12141472 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252640.3
AAGCTAAATATGCGACTCTGGCCAAAAGCTGCTTTAGACTGGCTGAGTTACGAGGTGCATTCCAGTATAATTCTACTGATCCTTCAGAGAGCACACGTGCTACGAAGAGTTGCCAGCAGACACCTGGACCTAATAGAGGAGCTGACTGTTGCTCAGGCAAGATGGTGCAGGAAATATGcgtcttcttcttttctttcactGCTCTTGGGGTGCTTCATGTCATGAACACGGTTCCAGCATTTCAAGAgcCTACAGCCATTATGCAGACTGGATTTGGAGTTCTACTGATCGTGTTCATCCTGATCTACCTCGCCTCTCGCTACAATCCACCAAAGGATCCCTTGTTCTACGTTTTCGCAGTGTTTTCCTTCACCTGTGTCATCGACATCGTAAGTGCTTTGGAACATGATGGCTATATCTCAGGATTCATGGACTTCTACCGGAAAGTGGGGGAGCCGTACCTCGGATCAGCATATGCCATCATGATGTGCTACTGGGATGGAATAGTACACTTCATCATGTACCTGGTGTTGATACGCCGCATGTCTGGCAGgaaGCCGTACCGCAATTTGGGCCTATTCTGGGCAGGATCACTATTAGCCAACatggttgtgtttttgttggGGATAATTGTGGGTAAATATGGCTCAGAGATCTATCCTGCCTTCTGGATCAACATGCCCTTCTTACTGCTGCCTATTTGGGGAGCTGTTCGCCTGTTCCAGAAGCCCAGAGAGCTGCTTGTTGTTGCTGCATCTAAGGCGGAACGTGAACAGAAGAAAGTCCTGATCTGGCGTCCTCTGGACCTCATACTTGTGATCTACCTTCTAGGCATCATGGTCCTCACATTGCTCAGAGGATTGGCAGTTCTGGATTGCCCAGTGGAAGTCTTCACATCATACGTGAATGAGTATGAGCCATATTTAAAGGATCCTGCAGGCTTCCCCAAGGTTATGatgctggtgctgctgttccaTGCTCTGCCCCTGCTGGGAGCGTTTGTGTACGGACTGATAACCCCTGGCTGCACCTGGATGCTGGACTGGACCATGTATGTCGCTGGCGCCATAGTACAGACTCAGTGGTGTCACGTCGGAGCCTCTCTGCACCCGCGCACAGCCGAGGCGCTCCACACTCCAGAGTCGACCCTGCTGCCCGTGCTCCTCCTTAACCTGCTGTACGCTCTGGGCCCGCTGCTGCTGGCCCTGCGATGCACAGGGGACCCGGCCTACTTCCTGTCCACTGCACCTGTGGGTCAGCACAACAATGAGAAGAAGTGGAGTTAAACTGTGCATATCTAAAACAGACACGGATAAAGATGAGTTTAAACTGCAGTACAAAAGATGAATATCACTAATGCTTCAAAAGAAGCTAAAACaatctctgtatctgtctcttttattattctctgatttcatgaattaaataaaacaatgtaatgTAGTTTTAATCTA

Function

NR:

description
PREDICTED: transmembrane 6 superfamily member 2-like isoform X1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252640.3 True 1454 mRNA 0.49 11 12121009 12141472

Neighbor

gene id symbol gene type direction distance location
hapln4 hapln4,LOC107728536,LOC107599484,LOC107719665 coding downstream 8744 12101238 ~ 12112265 (-)
LOC111192506 LOC108429549,LOC108271147 coding downstream 520935 11564002 ~ 11600074 (-)
LOC103041169 yjefn3,LOC103041169,LOC108429551,LOC108271278 coding downstream 570760 11474848 ~ 11550249 (-)
LOC103040147 NA coding downstream 735142 11374570 ~ 11385867 (-)
fstl3 fstl3,LOC107687713,LOC107728592,LOC107554822,LOC107569933,LOC107655223,LOC107719601 coding downstream 1046174 11066044 ~ 11074835 (-)
rabgap1l rabgap1l,LOC106574055,LOC106613570,LOC107715121,LOC107728556 coding upstream 297402 12438874 ~ 12589048 (-)
gpr52 gpr52,LOC107715120,LOC107655251,LOC107599442,LOC107592687 coding upstream 391365 12532837 ~ 12537648 (-)
fam163a fam163a coding upstream 460045 12601517 ~ 12626724 (-)
tdrd5 NA coding upstream 495331 12636803 ~ 12653719 (-)
axdnd1 NA coding upstream 515915 12657387 ~ 12673757 (-)
G41928 NA non-coding downstream 22855 12049720 ~ 12098154 (-)
G41877 NA non-coding downstream 367262 11753448 ~ 11753747 (-)
G41876 NA non-coding downstream 368706 11752071 ~ 11752303 (-)
G41865 tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454 non-coding downstream 411706 11704191 ~ 11709303 (-)
G41864 tmem161a,LOC107599454,LOC107719614,LOC107728546,LOC107554814 non-coding downstream 417784 11697531 ~ 11703225 (-)
G41952 NA non-coding upstream 99243 12240715 ~ 12247507 (-)
G42013 tjp3,LOC108429538,LOC108271152,LOC107728571,LOC107592677 non-coding upstream 107119 12248591 ~ 12270319 (-)
G42031 NA non-coding upstream 187145 12328617 ~ 12328837 (-)
G42034 NA non-coding upstream 196174 12337646 ~ 12339622 (-)
G42044 rab11b,LOC108429533,LOC107599444,LOC108280567,LOC107655249,LOC102310619 non-coding upstream 227091 12368563 ~ 12443766 (-)
nr2c2ap nr2c2ap,LOC107554809,LOC107687739,LOC107728548 other downstream 347907 11767698 ~ 11773102 (-)
borcs8 borcs8,LOC107599453,LOC107554813,LOC107728595 other downstream 358748 11756447 ~ 11762261 (-)
mef2b mef2b other downstream 389113 11720126 ~ 11731896 (-)
LOC103041480 NA other downstream 441990 11618444 ~ 11679019 (-)
LOC103040665 cilp2,LOC107728576,LOC107655229,LOC107687716,LOC107599460 other downstream 651131 11437652 ~ 11469878 (-)
tm2d1 tm2d1,LOC107669801,LOC107653653,LOC107715116,LOC106574044,LOC107731529 other upstream 1000901 13142373 ~ 13162805 (-)
fam32a fam32a,LOC107757479 other upstream 2162068 14303540 ~ 14305976 (-)
G42516 NA other upstream 2194458 14335930 ~ 14339171 (-)
G42661 NA other upstream 2321201 14462673 ~ 14526890 (-)
G42712 LOC108438667,LOC105021477,LOC107674533 other upstream 2719082 14860554 ~ 14861338 (-)

Expression


Co-expression Network