G41864 (tmem161a,LOC107599454,LOC107719614,LOC107728546,LOC107554814)


Basic Information

Item Value
gene id G41864
gene name tmem161a,LOC107599454,LOC107719614,LOC107728546,LOC107554814
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 11697531 ~ 11703225 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU56309
CCTTTCTTTGGATGTCAATTGCAGCTATACGCCCCGCCTCCTTTTTCATCTGCTCCACCCACTTGGGGGCAAGGTTGAGGTAGGCCTGCAGGTGGTGACGGGTGAGCAGCAGCTTTAACACGCACAACACCACAATCGTCCACAGCCGCACAGAGTCAAAGACTGAGCTGGAAATCAAAGTGACTGACGTCTTTCCCATAGGAGCATTCCCCAAGAAGTCACGGGCCAGAGGCTTTACCCACATCACAAGAATGACCAGTGGAGAGAGGAAACTGGTGTGTAGGAggattTGAATGATTGGCCGGTCACTGTTCATCTGCACAGCATCCAAGTGCGTCTGGGCAAGGCGGAGTCCAGGAAAGGCAAGAAGAGCTCCAAGAAAGGCACAAACAGCAGCCAGGGCCAACTTTACTCCAAGTTTGGTGAAAGGTACTGACCACTCAAGACCCTGCTGTTTGGCAAACACTTCAAAGTTGTCGAAGACACTGGTGAAACCAGGCTCCAGCCCGAACTCTAGATAGTCCTCCTTCACAACCAAAACCAGCATGGCTATGAGAAGAGACATGAACCCAAAAGCCAGGCAGACAGAACGTTCACCGCCCTCGTCCGAGCGGAAATAGTGGCTCATCAGGACATGGAGAGTTCTCAGTCCAAAGAACACCATCAGGACACACCAGATGGCCCCGATGTTGACCTCTTTACTGGCATCCACTACAAAGTAGTAGCCCTCAGTGAAGAGGTAAATGCCCATGGCGTACACAGCGAAGTCAATCAACCACTGATATTCAACGAAGAAGCGCAGAACCAGAGCATCTAAAACATTTACAGGAGTGCTTTCCAGATGTAAATCTATGTCCTTCGGCACCGTGAGTGGTTTTTGCTCCCCGTGGCCATTCTGCCTCCTGTCTCGCCTGCTGGACTTGTTGGGCACCTGCTTGCCAGCCAGAGCGCAGAGCTCTCCCTCAGAAGGATGTTTGAACCTCAGGAGACTGCCGTTGCATAAGAGCCAGCGTGCAAAGGAGTAATGTGGGGCCATTTTCTGCATTATACTGACGGCCAGCAAGCTGACCACCAACTGAACTCCCATCAGCGCCATGCTGGATTAGACGCAGTACTCAGCGAGGTTCAGTGCAGCTCACCGCTCCTGGAACAGCTGAA

Function

symbol description
tmem161a Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in adaxial cell; myotome; polster; and somite. Orthologous to human TMEM161A (transmembrane protein 161A).

NR:

description
transmembrane protein 161A precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56309 True 1158 lncRNA 0.52 10 11697531 11703225

Neighbor

gene id symbol gene type direction distance location
LOC111192506 LOC108429549,LOC108271147 coding downstream 97457 11564002 ~ 11600074 (-)
LOC103041169 yjefn3,LOC103041169,LOC108429551,LOC108271278 coding downstream 147282 11474848 ~ 11550249 (-)
LOC103040147 NA coding downstream 311664 11374570 ~ 11385867 (-)
fstl3 fstl3,LOC107687713,LOC107728592,LOC107554822,LOC107569933,LOC107655223,LOC107719601 coding downstream 622696 11066044 ~ 11074835 (-)
LOC103035863 NA coding downstream 714744 10971381 ~ 10982787 (-)
hapln4 hapln4,LOC107728536,LOC107599484,LOC107719665 coding upstream 398013 12101238 ~ 12112265 (-)
LOC103045149 LOC108429540 coding upstream 417784 12121009 ~ 12141472 (-)
rabgap1l rabgap1l,LOC106574055,LOC106613570,LOC107715121,LOC107728556 coding upstream 735649 12438874 ~ 12589048 (-)
gpr52 gpr52,LOC107715120,LOC107655251,LOC107599442,LOC107592687 coding upstream 829612 12532837 ~ 12537648 (-)
fam163a fam163a coding upstream 898292 12601517 ~ 12626724 (-)
G41811 NA non-coding downstream 303793 11393452 ~ 11393738 (-)
G41809 cirbp,LOC107719610,LOC107655227,LOC107599461 non-coding downstream 325824 11336777 ~ 11371707 (-)
G41778 midn,LOC108429554,LOC108271022,LOC107687715,LOC107655225,LOC107599463,LOC107554818 non-coding downstream 464720 11197714 ~ 11232811 (-)
G41752 NA non-coding downstream 490107 11109916 ~ 11207424 (-)
G41755 NA non-coding downstream 593383 11103907 ~ 11104148 (-)
G41865 tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454 non-coding upstream 966 11704191 ~ 11709303 (-)
G41876 NA non-coding upstream 48846 11752071 ~ 11752303 (-)
G41877 NA non-coding upstream 50223 11753448 ~ 11753747 (-)
G41928 NA non-coding upstream 346495 12049720 ~ 12098154 (-)
G41952 NA non-coding upstream 537490 12240715 ~ 12247507 (-)
LOC103041480 NA other downstream 18512 11618444 ~ 11679019 (-)
LOC103040665 cilp2,LOC107728576,LOC107655229,LOC107687716,LOC107599460 other downstream 227653 11437652 ~ 11469878 (-)
G41767 atp5d,LOC102779772 other downstream 539696 11150669 ~ 11157835 (-)
G41763 cbarp other downstream 552370 11126385 ~ 11145161 (-)
LOC103036175 tpm4,tpm4a,LOC103036175,LOC108424981,LOC107561904,LOC107665514,LOC107715082,LOC107757474,LOC107653617 other downstream 681446 10985184 ~ 11016085 (-)
mef2b mef2b other upstream 16901 11720126 ~ 11731896 (-)
borcs8 borcs8,LOC107599453,LOC107554813,LOC107728595 other upstream 53222 11756447 ~ 11762261 (-)
nr2c2ap nr2c2ap,LOC107554809,LOC107687739,LOC107728548 other upstream 64473 11767698 ~ 11773102 (-)
tm2d1 tm2d1,LOC107669801,LOC107653653,LOC107715116,LOC106574044,LOC107731529 other upstream 1439148 13142373 ~ 13162805 (-)
fam32a fam32a,LOC107757479 other upstream 2600315 14303540 ~ 14305976 (-)

Expression


Co-expression Network