LOC103027359 (LOC103027359,LOC108429523,LOC107653655,LOC107592692,LOC107669838,LOC108270584,LOC103369105)


Basic Information

Item Value
gene id LOC103027359
gene name LOC103027359,LOC108429523,LOC107653655,LOC107592692,LOC107669838,LOC108270584,LOC103369105
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 12719795 ~ 12731852 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240074.2
CTCCACTCTAATTAGAGTGTTAATTAATGTGGGAGAGAATAAAAAGCGACGGTAGTGAATGGCAGTGGCCAGCGTGCCCCACCCCAGCCGTCTGCCTGCATTCACTTCATCCCTCCGCCTCGCCATTCACAGTTTCTCGCCCCTAGTCGAGGCTCTGGAGCTGTGTGTATGAGCATAAATGCCGGTGTAGTGAGGCTGGAGAGAACAGCTTAGCTTCCACAGCTGTGTTCTCAGCCTGTGTTCAGACAGACCTCATCCAGTTCAGAGGAGACAGACCACCGTGGGAGAAGCTCCAGCTAGTCGAGATGGCTAAAGCTGACCACCGTTTTGGCCAGAGGGATGGCTCTGATCAGAACTTTGATTACATGTTCAAGCTGCTCATCATTGGCAACAGCAGTGTGGGCAAAACCAGCTTTCTGTTCAGATATGCAGACGATTCCTTCAGCAACTCCTTCGTCAGCACGGTCGGCATCGACTTTAAAGTTAAGACTGTTTACCGGAACGACAAGAGAGTCAAGCTCCAGATTTGGGATACTGCTGGTCAAGAGCGCTACAGGACCATCACCACGGCCTACTACAGAGGAGCTATGGGTTTCATTCTCATGTATGACATCACCAATGAGGAATCTTTTAATGCAGTGCAGGACTGGGCAACCCAGATTAAAACTTACTCGTGGGACAATGCTCAGgttattttagtggggaataaATGTGACATGGATGATGAGAGGGTCATACCTATGGAGAAAGGCAAGCACTTGGCTGATCAATTAGgaTTTGAGTACTACGAGGCAAGCGCCAAAGAAAACATCAATGTCAGGCAAGTGTTTGAGCGCCTGGTGGACATCATCTGCGTGAAGATGTCTGAGCGAGTGGACGCAGACCCGTCTATGGTGACTGGAGCAAAGACCACTCGGCTTACTGATAAACCTGCGCAACTACCTCAGAATTGCTGCTGATTTAATCTATTTAAGATGCAGTCATACACTAATCTATCACATATAGACCCCTCTCTCTGTCGGCTTTTCATTCTCATTTCATTTCCATCAACACTGACCTTTTACTCCATCTTAAATATGTAGATTACTGTTACTGCCATGTCATCCCTTTGAGCACACATCTGACTGTGGATCGGTTTGAAGTCAAAGCAGGGACTACAGCAAAGCACAAAACTGAATCTTAGGCACTTGTTCACTGCCAGATACAGATATGAAGCATCTCTCGTGAGTAAAATCAAGCATCTACAAGTGTATTAATATAGCCTAATCGGtgctttatgaaaaaaaaagaaaatgtgaagcTTCTTAATGTGTGTACAATCTCTGCTCCTTTTCCTTAATTGTTGCTCGGTGAAAGAGGCACAAGTGTAACCTAAACTCAGACGACTGCAGAGTGGCCATAACTACGGTATATTATGCACAATAATGGTcagttctgtattttttatggtGGTTTCGATGTTCTGGTTTTTAACTTGGGCAGAACTACTGGCAGTTGGGTTCCTTCTAATATCTATGATGGgcacaaatgtgtttttggacATGGAGCACTTTGCAAACGACCTCTGtcgaatatattgtgatttagaaGTAGTTTAGTACTGAGTCAGGGTGAATAGCCTGTGTcttacaaaaacaacaatccattCAGGGGCTGGATTCACAAAGCTTTCGTAAGAAAAAACTaagcagagttaaaaaaaaatagaagttcTCAATAATtctctttaaaaaattatattatcataAAATCTTCTAAAGACATACTTCATTGTATTCCTTtgcaaacatttgtttttatcaaACTGCATTTAACAGCTTGTCTTAAATGAcacaaaacaattttttaatctttcattattaagttaaataaggaagaaaaaagaggagCTGAAGTGATGGAGTAGGAAACAAAAATCCTCCCCCTGTAAAACTATGAGAAGTGTGGCatgatgtttaaaatgattttcctTGCATAGAAACTAACAGTACATTAAAAACAATCTCCactgttaattaattttaatttgacAATAATTTGGCAATTCAGCAccttaaaatgattattttaaacTGAGACTTCTTAGAGTCTAAGACCAGCGTAATTGTTtgtattgtataattttttaaaaaacagttgtATTTAGATCAATGTTAAGAAATGCTCTAAGAAATGTTACAATGAATTAAAGGAATGAATTGAAgatgaattaaaacaaaattttagaaaaaagaaacacaggGAGCTGAATAAGAATAATATGAATTCCTTTGATCTAAAACATGATCTGTTATGTTTTATGTGCCAATTCTTGACCCTGTCTGGTAAAGGACCCTAGCTGGCACATGGGTGTTTTATAAAGCCAGTAGCTAGCATGCTAATTCCAGGTAGCAGTGTTTGATAAGGCAAGTAGCCAACAACAAGTAAGCGAAAATGTCTCTTACAGGCAAACAAAGACACATAAGAAAAATTACTTTCTGAAGACACTTTTGTGACACTGGCCCCTTCACTTTTACAATCTAAATCTAGTGTATAAATATTTTGGAACACTTactgttcttatttttcttaagagaaatattacagtaaaaataaatacctttattatttatcattacttttttaagtataaagttaaaaaagcacacctaaaaacaatttttttcttaagaCACTTTTGTGAATCCCGCCCCAGATTTGTTCTATTGCATACAAGTGAGTATTCTGTTGtggaataaatacatatatgtataaatatttatacgTTTAGTGTGTATAATGAACTGTACATCCAGCTGTCAGGCGGCATTCGGGTCGTAACTTCATGTATTTATGCTTCACTCAACAACACTTCAGATTAGCAATGGcagattaaaaatgaaaaccttTAGAGATGCCAgtacatgtatattatataactcATTGTGCCACAATTTGTATCTCAGAAAAGTAGCAGATCCTCGTGGAGCTATATGTGTATCACATACAATACCTTTTTAATCACGTGATGTTAAATATTTACGACTGAATGTTTTCTGTAAGTACtttgaaattttattttaaatgagatATTTGTAATTCAGATGTTATAAGCTATCAGACTGGTCTTTGCTGAGtagatctttattttttatgctgcCACAACCTATGCTGGGAACATATAGATGTACTGTAACCTTGCTGTCAGTGATTTTTGACTGGTAGAGAATTTGCACAGGGACGTAAAGTGATTGTACAGATCATTGTAAGGTCCGTTTTAGATgcaatttgtaaaaataaaagtatcaaTCATACCACATTATG

Function

NR:

description
ras-related protein Rab-3B

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K06108 RAB3B; Ras-related protein Rab-3B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240074.2 True 3303 mRNA 0.38 5 12719795 12731852

Neighbor

gene id symbol gene type direction distance location
LOC103026065 nrdc,LOC108429524,LOC108271269,LOC106613566 coding downstream 3605 12675509 ~ 12716190 (-)
axdnd1 NA coding downstream 46038 12657387 ~ 12673757 (-)
tdrd5 NA coding downstream 66076 12636803 ~ 12653719 (-)
fam163a fam163a coding downstream 93071 12601517 ~ 12626724 (-)
rabgap1l rabgap1l,LOC106574055,LOC106613570,LOC107715121,LOC107728556 coding downstream 130747 12438874 ~ 12589048 (-)
atpaf1 atpaf1 coding upstream 1739 12733591 ~ 12744707 (-)
LOC103026589 LOC108429520,LOC108271303 coding upstream 24827 12756679 ~ 12802183 (-)
pdzk1ip1 pdzk1ip1 coding upstream 637442 13369294 ~ 13373938 (-)
tal1 tal1 coding upstream 649247 13381099 ~ 13391023 (-)
ier5 ier5 coding upstream 716740 13448592 ~ 13450507 (-)
G42113 NA non-coding downstream 35025 12683532 ~ 12684770 (-)
G42071 NA non-coding downstream 84989 12634443 ~ 12634806 (-)
G42069 NA non-coding downstream 86328 12632814 ~ 12633467 (-)
G42063 NA non-coding downstream 95305 12594615 ~ 12624490 (-)
G42061 NA non-coding downstream 196229 12522989 ~ 12523566 (-)
G42125 NA non-coding upstream 23940 12755792 ~ 12756117 (-)
G42229 NA non-coding upstream 157926 12889778 ~ 12943157 (-)
G42244 NA non-coding upstream 363969 13095821 ~ 13099379 (-)
G42261 NA non-coding upstream 522470 13254322 ~ 13258713 (-)
G42281 stx6,LOC107715114,LOC107669815,LOC107653648,LOC107731540 non-coding upstream 721705 13453557 ~ 13456518 (-)
nr2c2ap nr2c2ap,LOC107554809,LOC107687739,LOC107728548 other downstream 946693 11767698 ~ 11773102 (-)
borcs8 borcs8,LOC107599453,LOC107554813,LOC107728595 other downstream 957534 11756447 ~ 11762261 (-)
mef2b mef2b other downstream 987899 11720126 ~ 11731896 (-)
LOC103041480 NA other downstream 1040776 11618444 ~ 11679019 (-)
LOC103040665 cilp2,LOC107728576,LOC107655229,LOC107687716,LOC107599460 other downstream 1249917 11437652 ~ 11469878 (-)
tm2d1 tm2d1,LOC107669801,LOC107653653,LOC107715116,LOC106574044,LOC107731529 other upstream 410521 13142373 ~ 13162805 (-)
fam32a fam32a,LOC107757479 other upstream 1571688 14303540 ~ 14305976 (-)
G42516 NA other upstream 1604078 14335930 ~ 14339171 (-)
G42661 NA other upstream 1730821 14462673 ~ 14526890 (-)
G42712 LOC108438667,LOC105021477,LOC107674533 other upstream 2128702 14860554 ~ 14861338 (-)

Expression


Co-expression Network