atpaf1 (atpaf1)


Basic Information

Item Value
gene id atpaf1
gene name atpaf1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 12733591 ~ 12744707 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669618.1
AGGGAGCGAGTGTACTGTATTGAAACAGTCCCGCTGTGTGAGAGGAACCAATATCGCGGGGCTGCAGCGACCCGGAGCTTTCCTGATGAGCGACGGGGAGAAGATGGCAGCGGCCGTGGTGCAGATGGCCTGCTCTTACCGCGGCATGTTAGCCGTGAGGAACGCGGGAATCCGCGCCCTAATTCCCGGTATAGTGCCCTCCCACTTCCGCGCCTTCTCGGTGAAGAAAGAGCCGGAGCTAGAGGACAATCCGTACTACAGTAAATACGAGGAGAAGATCAAGAGACTGCGGAGTGCAAAGCCTCAAGAATACAAAGCCCGTCTTGAAAAGAGCAGTGAGGTGAAGAAGGAACCTCTTGGACGCTCAAAGCAAGCTGAGTTCATCAGAATTCTGGATCAGGAGatggagaaaaaaggcaatgCAGAATCCAGAGGTTTTACCAAAAACAAGacttTAGGATCTATCCTCAACCTTGATATGGTTCAAGACAAGTCTGGAAGTGAAATTGGAGAGctttgGATGCAGTACTTCTCAACAAAAGACACAATCAGTGCTGGGATACCGGGGTCGACTTTTGAGACGATGATCACTCGATCCAGGTCATGCCCAACGTTCTTGTACGCTCTGCCGCGTAAAGAAGGCTATGAATTCTTTCTGGGTCAGTGGGCTGGTCAGGAGCTACACTTCTCTTCTCTCATCAACGTCCAGACCTTGGGCGAGAACGCACCCAGCCAGCTGATACTGTACCACTATTCCGACCTGCAGAAGGACAAGGATATTGTGCTGCTGACTGCAGAAATGGATAGCAAATTTATTACTGTTCATGAGGCTCAGTGCTTGGCCAATCAAGTGCAACTGTTCTACGCGGCTCAGAGGCACGAGACCTTTCAGCTGGTGGAGGCTTTCAACCACAGGCCGACAGATTTTAAGCACATGTCTGTGATAGCAGAACTAGAACAGAGCGGAATAGGACTAGGAGCAAAAACAAAGTAATGGCCATTTCCGTGGACACAGAGGCCTGGCGAAATCCACTGGCAGGACCTTCCCAATGGATTTAGTCTTCTCTTTAACCCTGTTCACGTGTTCAAAAAGAGACTTATTTAAGTGGACTGAATATACCTCATCAAACTTGCTACCATGTATGCAGGTTGACACAGTGTGATTTGCTTTGTTTGTACTTCATAAAACGCCATGTCTTTTGATGCACATGTTCGTGCATTCTCTAAAAGACTGATATAGATTTATTTTGGGGATTGTTATAGACATCTGATCTTACTTTGGTTCCTTAATACACTATGGGATTTGTGTGTATGCTTTAAGCCGTACACATCACCACAGTTATATAAAGCATTTTGATTAATATGCTCTGAGAACTGCCAAAATAAGCCtatgtctatttatttattgtctatTTACAAACTAACTAAAAGTGCTTGTTTATTGTTTGCATCCATAAAGTGAAGTGAATTGTGAATATTATAAagtattctttcttttattattttatgagcTGCTGCTGTGACAGGCAATattgtttttgtgaaaaatgcaaCCCTCACAAAGTTTGAATATTGAGACCCTCTGTTTAAACAAATGGAATTGGCTGGGATTTGGCTTGACAGGAAGGAAACCTGTATCCATTAGGCCCTTTTCTGATTGGATTGAACACCCTGGTGAAATCAATAACACCCCTTTCCCCCCTTAATGTGCTATCATTCAGTGGTCTGTTTGGGAAAACATGCCATCCTTAGGAGAGATGTTATCGCAAGTAAGTTTATGTGTTTGGGTTAAGCCAGGGTTGTTCATAAGtcatgcatttattaaaaaataataacaactgTTGGATAAAGAGTTAAAAGACTACTCTTTActggtgttttattctaaatctgataaaaaaaaaaaatacatcccaCTGTTTGCACCCCCAGGTTATCATTTTTGGCATTGTCCAGTACAGTAATTGGTACACCCATTATCAccataaaaacatgtttataaataGTGTACAGCTGATTTAGTGAGACACAGAAAATTAGTAATAAAAAGTAAGTCAGAAAAAGTactaataaactgtatattacCAAAGTTGCTGCTGTTGATGTGTATTGCAGCCATCTTGGGTTctaaactacaaaaataaaaaattcccaCTTGGAACTAAGAAACTCTAACAACTGTGGTCAATAAGAGTACACTATGTGTTCTCATACATCTGTAACATAATCTGCCGAATgctattaatgtaaatgttcacACAAAGTAGTTTTCATTAAAGCATTGTTTCtgctatacatttattttttgtttgatatAAAGAGTTGCACACTTTTTGGTTGAA

Function

symbol description
atpaf1 Predicted to be involved in mitochondrial proton-transporting ATP synthase complex assembly. Predicted to act upstream of or within protein-containing complex assembly. Predicted to be active in mitochondrion. Is expressed in immature eye and optic tectum. Orthologous to human ATPAF1 (ATP synthase mitochondrial F1 complex assembly factor 1).

NR:

description
PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 1

GO:

id name namespace
GO:0005739 mitochondrion cellular_component

KEGG:

id description
K07555 ATPeAF1, ATPAF1, ATP11; ATP synthase mitochondrial F1 complex assembly factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669618.1 True 2342 mRNA 0.41 10 12733591 12744707

Neighbor

gene id symbol gene type direction distance location
LOC103027359 LOC103027359,LOC108429523,LOC107653655,LOC107592692,LOC107669838,LOC108270584,LOC103369105 coding downstream 1739 12719795 ~ 12731852 (-)
LOC103026065 nrdc,LOC108429524,LOC108271269,LOC106613566 coding downstream 17401 12675509 ~ 12716190 (-)
axdnd1 NA coding downstream 59834 12657387 ~ 12673757 (-)
tdrd5 NA coding downstream 79872 12636803 ~ 12653719 (-)
fam163a fam163a coding downstream 106867 12601517 ~ 12626724 (-)
LOC103026589 LOC108429520,LOC108271303 coding upstream 11972 12756679 ~ 12802183 (-)
pdzk1ip1 pdzk1ip1 coding upstream 624587 13369294 ~ 13373938 (-)
tal1 tal1 coding upstream 636392 13381099 ~ 13391023 (-)
ier5 ier5 coding upstream 703885 13448592 ~ 13450507 (-)
kiaa1614 LOC107588106,LOC107592730 coding upstream 730387 13475094 ~ 13505789 (-)
G42113 NA non-coding downstream 48821 12683532 ~ 12684770 (-)
G42071 NA non-coding downstream 98785 12634443 ~ 12634806 (-)
G42069 NA non-coding downstream 100124 12632814 ~ 12633467 (-)
G42063 NA non-coding downstream 109101 12594615 ~ 12624490 (-)
G42061 NA non-coding downstream 210025 12522989 ~ 12523566 (-)
G42125 NA non-coding upstream 11085 12755792 ~ 12756117 (-)
G42229 NA non-coding upstream 145071 12889778 ~ 12943157 (-)
G42244 NA non-coding upstream 351114 13095821 ~ 13099379 (-)
G42261 NA non-coding upstream 509615 13254322 ~ 13258713 (-)
G42281 stx6,LOC107715114,LOC107669815,LOC107653648,LOC107731540 non-coding upstream 708850 13453557 ~ 13456518 (-)
nr2c2ap nr2c2ap,LOC107554809,LOC107687739,LOC107728548 other downstream 960489 11767698 ~ 11773102 (-)
borcs8 borcs8,LOC107599453,LOC107554813,LOC107728595 other downstream 971330 11756447 ~ 11762261 (-)
mef2b mef2b other downstream 1001695 11720126 ~ 11731896 (-)
LOC103041480 NA other downstream 1054572 11618444 ~ 11679019 (-)
LOC103040665 cilp2,LOC107728576,LOC107655229,LOC107687716,LOC107599460 other downstream 1263713 11437652 ~ 11469878 (-)
tm2d1 tm2d1,LOC107669801,LOC107653653,LOC107715116,LOC106574044,LOC107731529 other upstream 397666 13142373 ~ 13162805 (-)
fam32a fam32a,LOC107757479 other upstream 1558833 14303540 ~ 14305976 (-)
G42516 NA other upstream 1591223 14335930 ~ 14339171 (-)
G42661 NA other upstream 1717966 14462673 ~ 14526890 (-)
G42712 LOC108438667,LOC105021477,LOC107674533 other upstream 2115847 14860554 ~ 14861338 (-)

Expression


Co-expression Network