G42069


Basic Information

Item Value
gene id G42069
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 12632814 ~ 12633467 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU56591
agaccataacgctctggggaaacttgatggatcttttcacgcactcgtggttgtaggtttcgccaccacgacgccagacacgaggaccttggtcaccgaaggagatgcagaagcgtgattcgtcactgaagaccactttctgccagtcttcagcagtccactcgccgtgttctttggcccacttcagccgtttctccatttgtttcttgttcagcatcggttttactgctggaacgcgagatttgaagccgagttcgcgcagacgacggtaagtggttgatctggagacgtcagcgccggtctgcttgttccacaagtcggtgagctcggaagtggacttgaaccggttgctgactgcgatctttctcagctgcttgttgtcgcgagcagaagtttttcggatgccggaacagttggtgcgcttgctgcagtttttcttgagagctttgcagacggaagactggctgatgccgagctgctcagcaattttagtttgggtcaagccttgttggcgaagggcttgaatttgagccactattccggttgagaggttgcgctgcttacccatgattgattttacaacttagaaattctactcaaccctgactttatactgcacagtgaacactcttcacagaaaacaaaaattcgagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56591 True 654 lncRNA 0.50 1 12632814 12633467

Neighbor

gene id symbol gene type direction distance location
fam163a fam163a coding downstream 6090 12601517 ~ 12626724 (-)
rabgap1l rabgap1l,LOC106574055,LOC106613570,LOC107715121,LOC107728556 coding downstream 43766 12438874 ~ 12589048 (-)
gpr52 gpr52,LOC107715120,LOC107655251,LOC107599442,LOC107592687 coding downstream 95166 12532837 ~ 12537648 (-)
LOC103045149 LOC108429540 coding downstream 491342 12121009 ~ 12141472 (-)
hapln4 hapln4,LOC107728536,LOC107599484,LOC107719665 coding downstream 520549 12101238 ~ 12112265 (-)
tdrd5 NA coding upstream 3336 12636803 ~ 12653719 (-)
axdnd1 NA coding upstream 23920 12657387 ~ 12673757 (-)
LOC103026065 nrdc,LOC108429524,LOC108271269,LOC106613566 coding upstream 42042 12675509 ~ 12716190 (-)
LOC103027359 LOC103027359,LOC108429523,LOC107653655,LOC107592692,LOC107669838,LOC108270584,LOC103369105 coding upstream 86328 12719795 ~ 12731852 (-)
atpaf1 atpaf1 coding upstream 100124 12733591 ~ 12744707 (-)
G42063 NA non-coding downstream 8324 12594615 ~ 12624490 (-)
G42061 NA non-coding downstream 109248 12522989 ~ 12523566 (-)
G42044 rab11b,LOC108429533,LOC107599444,LOC108280567,LOC107655249,LOC102310619 non-coding downstream 189048 12368563 ~ 12443766 (-)
G42034 NA non-coding downstream 293192 12337646 ~ 12339622 (-)
G42031 NA non-coding downstream 303977 12328617 ~ 12328837 (-)
G42071 NA non-coding upstream 976 12634443 ~ 12634806 (-)
G42113 NA non-coding upstream 50065 12683532 ~ 12684770 (-)
G42125 NA non-coding upstream 122325 12755792 ~ 12756117 (-)
G42229 NA non-coding upstream 256311 12889778 ~ 12943157 (-)
G42244 NA non-coding upstream 462354 13095821 ~ 13099379 (-)
nr2c2ap nr2c2ap,LOC107554809,LOC107687739,LOC107728548 other downstream 859712 11767698 ~ 11773102 (-)
borcs8 borcs8,LOC107599453,LOC107554813,LOC107728595 other downstream 870553 11756447 ~ 11762261 (-)
mef2b mef2b other downstream 900918 11720126 ~ 11731896 (-)
LOC103041480 NA other downstream 953795 11618444 ~ 11679019 (-)
LOC103040665 cilp2,LOC107728576,LOC107655229,LOC107687716,LOC107599460 other downstream 1162936 11437652 ~ 11469878 (-)
tm2d1 tm2d1,LOC107669801,LOC107653653,LOC107715116,LOC106574044,LOC107731529 other upstream 508906 13142373 ~ 13162805 (-)
fam32a fam32a,LOC107757479 other upstream 1670073 14303540 ~ 14305976 (-)
G42516 NA other upstream 1702463 14335930 ~ 14339171 (-)
G42661 NA other upstream 1829206 14462673 ~ 14526890 (-)
G42712 LOC108438667,LOC105021477,LOC107674533 other upstream 2227087 14860554 ~ 14861338 (-)

Expression


Co-expression Network