G15099


Basic Information

Item Value
gene id G15099
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 3735786 ~ 3738369 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU16879
TAAACTAAACTAAACTAAACTAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATACTTCCGGAACCAAGAGTGCTGAAACGGGTGGTTATTGTCATGCTTTATTTCAGGTTATCACCTAACTGCTGAGACTAAAGAAAATTGTGTAAAAACCACTTGTCAAAATATCAATCATTTTGGATCTGTCAGGAAGTATTGACATCTAATTGAATGATCATTGGATAAGCATTAACCTCCAAGGCTAAACCAGCCCCTGTAATGCATCACACGTCACAGGGTATTAGCGTAATTCGATTATGATCTTCTGCTTGGCTATTGAGTTCAACCAAAACAAAATTATGTTTTAATTGAAGTCAAATGTAATAAAATGAAGAGCATGACGTTTTACATGACTCATAAACACACAGCATGCTTGCAGCCCTACATAGCAAAATCTAATATATGACGTCGCCGGCTGTTTTCTAGAACATGCAGCTGTGCATCATGAGAGAAAAAATATATATATATAAATGGATCTGTAAAAGGTTTTTGCTGGAATATTTATCCCCGTGCAAGAGTAATAGGCAATAAATCACAGCTTGGATTTTCAGAGGAGACTTTGATTCCGCAGGAAGGAAGCCAACAGTCTCTCACTGAGATTGTGAACACTTCATTGTCCCCTGACATGTGTTCTACATACTCAGCAACTTGGATCAGATCTTAGGACTCTGTCTGATTCAAGCAAGAGACAATTCACAATTGACAGAGCGTATGTCATGGTCTCAGCTTATTCTTTTTCCTGGTTGCTGTAGTGCATGGAAATCTGAATCCTAATAAAATGCATTTTTTATGTTTTACATCACCACCACAACAGAAATTATTCTGGCATGGTGAGTAGATCAACGACCAACAATGCAAGCAATGTTAACATGCAGGCACTAACAAGACAGCCACAAAACAGACAGTTTCTTCCAGTGACTTTTTTTTTTCCCTTTCGGTAGGTAGATTTTTTTTTTTTTTTTTTTTTCACAGACCAATAACATCTGATTTTTTTTTAGGTTATGTGACAAATAAATTGCATAAAACCATCTCTATTTGCCCATTTCAAAACTTGCTAGCTATCATGTTCTGTTGAGAAACGCAACTATTTTAAGAAAATCTGAGCCTGCATACATCAGGAAGTCTGCTCGAGCACTTGTCTGCCTTCTCTTTCTCTAAACCCCATCTTCCATCACCCTCTCAGAGCAAAGTCTACACAATGAAAAGCGGAGGGCTGTGCAACCAAAAAGGTGCTAGCTTTGAGGAAGCCACATAATGGAAGGAGCAGATATCCATCAACACTGGGATTGTTTTGGGGAGGATGTAGAAACTTAAGTCAAAATACTGGATCCACTTTAAGTGCCGGTAAACAATTAGCAGTTTACATTGTGCGCTAAATTAGTTGCACAAGCTTGATAAACTTGATTTGAGGAACAAAAGCATAGTATGTTTTCTGCACCAATATTTCAGCAACTGAGTATTTTCGTCCGAAACTGGAAAAAAAAAAAAAAAAAAAAAAAATCCGTTTTGGCCTATAAATAGTTTTGGAGGGCTGAGTTCATTGGATATGGATATTTTTATTACAAAAACGCATCGCTTTGCTTCAGCTTTATTAACCCTCTGGAGCTGTAGGAATTACTTTTATGATGGATGGATGTGCTTTTTTGGGCGTCAAAATATCGGTTAATATTCACTCCTATTATAAAGCTTTGAAGAGCCAGAATATCTTTTAATATAACTCAGATTGTGTTTGACTGAAAGAAGAAAGTCATATACACCTAGGATGGCTTGAGGGTGAATACATTATGGGATTAATTTTCATTTTTGGGTGAACTAAACCTAAATGCTTATCTGATGGCTTGCTTGACTGATTCAATGTTTTGGATAAGCTGCAACAGGAAAACGTCAGCAGTGTGGATGAAATTCACTGTTAGAGCACATTATCATCGAGACACATGACCAGTGAGAAACACATGAAAAACACGAGACACATGAGAAAGTTTCCTCTTTCTCTCATTTTTTATCCTCAATATATACAAATTTATGTACAGAGGTTTGTATATATGATTTTATTTTATTTCTTTTCTTGAAAGTATATTTTATCTTGTTTTATTTTTTTACTGGCATTTTTATCCAAAAAGGGTTGATTTTTCAAGGGTTGATGGTAGAGCAGAAATATGTACAATTTGTTAGGCTGAAATATTTAGAGGTCACTGTCGAAAAACACTATTTTAATTTATGAGCAGGGTTATTATAGTTAACTAAAACTATATTAAAAAAAAAAAAAAAAAACATTTTCATTACTTGAAATAAACATTAACTGAAATAAAATATTAAAAAGCTTAAACTTATTTCAGTTAAGTTGCTGAAACTTAAACTATATAAACTTAAAAAAAAAGAAAAAAAAAGACAAAAACCATGCAACAAAATTACTAAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU16879 True 2517 lncRNA 0.33 2 3735786 3738369

Neighbor

gene id symbol gene type direction distance location
CI01000001_03623291_03628923 DAZAP2 coding downstream 106863 3623223 ~ 3628923 (-)
CI01000001_03603684_03607612 NA coding downstream 128174 3603346 ~ 3607612 (-)
CI01000001_03534862_03537560 NA coding downstream 198226 3534307 ~ 3537560 (-)
CI01000001_03515448_03525499 CS, CS.L coding downstream 210287 3514972 ~ 3525499 (-)
CI01000001_03502743_03504170 NA coding downstream 231616 3502687 ~ 3504170 (-)
CI01000001_03779021_03796563 RAPGEF3 coding upstream 39440 3777809 ~ 3796563 (-)
CI01000001_03848621_03850592 NA coding upstream 110044 3848413 ~ 3850798 (-)
CI01000001_03853690_03853904 NA coding upstream 115301 3853670 ~ 3853904 (-)
CI01000001_04060101_04062122 NA coding upstream 321141 4059510 ~ 4062793 (-)
CI01000001_04334653_04338081 NA coding upstream 595794 4334163 ~ 4338769 (-)
G15113 NA non-coding downstream 33557 3693592 ~ 3702229 (-)
CI01000001_03497808_03500098 RUXG, SNRPGP15, SNRPG.S, SNRPG non-coding downstream 235578 3497483 ~ 3500208 (-)
G15030 NA non-coding downstream 248379 3485842 ~ 3487407 (-)
G15065 NA non-coding downstream 369941 3365437 ~ 3365845 (-)
G15064 NA non-coding downstream 370553 3365034 ~ 3365233 (-)
G15097 NA non-coding upstream 65965 3804334 ~ 3835923 (-)
G15151 NA non-coding upstream 109105 3847474 ~ 3847704 (-)
G15093 NA non-coding upstream 125803 3864172 ~ 3867265 (-)
G15186 NA non-coding upstream 158018 3896387 ~ 3896634 (-)
G15246 NA non-coding upstream 243100 3981469 ~ 3981676 (-)
CI01000001_02258523_02262621 NA other downstream 1438574 2258442 ~ 2263103 (-)
G14228 NA other downstream 1679308 2055974 ~ 2056478 (-)
G14219 NA other downstream 1740888 1994210 ~ 1994898 (-)
G14104 NA other downstream 1968328 1763669 ~ 1771468 (-)
CI01000001_00362143_00378213 NA other downstream 3338653 361614 ~ 378213 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 653945 4392314 ~ 4399804 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other upstream 737915 4468209 ~ 4523431 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other upstream 830713 4725927 ~ 4728210 (-)
G15736 NA other upstream 1062532 4800901 ~ 4801395 (-)
G16332 NA other upstream 1212320 4950689 ~ 4957842 (-)

Expression


Co-expression Network