hapln4 (hapln4,LOC107728536,LOC107599484,LOC107719665,LOC107687742,LOC107554801)


Basic Information

Item Value
gene id hapln4
gene name hapln4,LOC107728536,LOC107599484,LOC107719665,LOC107687742,LOC107554801
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 9613879 ~ 9619115 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223912.1
AGTTTGCGATTAAATTCGCAGCTGTAAACAAGGCTACACAAAATACTTCAAACTTAAAAGTGCACCGTCCGAAAAAGAGACGGGCAACCCTCTTTGATACCAACAGTGCATCAGCCTAACACTAAGAGCTTTTCTTCAGTCGTAATGTAAATGAGAGAGACACCGTCAGCAGCACAGTGTGATGAGACGCGACAGACGACATCTGCAGTGAAACCGAGTCAGAACCGGGACGGCTGCACCGGAACGCAATCACTGCACCGGAGCAATAATAACTTCATACTGCATAAAACGCGTCCTCTCGTCATGCTGatcttGTGCTTGGAAACCATTACCTGTGGGCTGTTGTTACTTTCACCCTTTGTGAACACCTACCCAGCCGACTTGGAGAAAGGACGTAGGAGAGTGGTTCATGTAATGGAGGACGAAACAGGGGCAGTGATAGTCCAGACTGCTCCAGGTAAGGTGGTCACTCATCGTGGTGGCACTATCACTCTTCCCTGCCGTTACCACCATGAACCAGAGGACGTCGACCCTAACCGCATCCGCATCAAATGGACAAAGGTTTCTGACGCTTTCCAGTTTGAAGACGTATTTGTAGCACTGGGGCGACAACAGAAGGCATTTGGGTCCTACCGTGACCGAGTGTCTCTGGAACGGGCCGGGCCAGGAGATGCTTCAGTTATTATTCACAATATCACCTTGCAAGATTATGGCCGCTACGAGTGTGAGGTCACCAATGACATGGAGGATGACACAGGATTTGTCAATCTAGACCTTGAAGGTGTGGTGTTCCCATACTACCCTCCATCTGGACGCTACAAGTTGAACTACCACCAGGCAGAGGAAGTGTGCCAACAGCAAGATGCAATTCTGGCCTCCCATGCACAGCTCCACAAGGCATGGCTTGAGGGACTGGACTGGTGCAACGCCGGCTGGTTAGAGGATGGTTCGGTCCAGTACCCCATCTCCCATCCTCGAGACCAATGTGGCCGAAAAGAAAGCCCTCCGGGGGTCCGTAACTATGGCTATAGGCACAAAGATGATGAACGCTatgatgctttttgttttacctCGAACCTCAATGGACGTGTTTACTTCCTCAAACGTTTTAAGAAGGTAAACTACATCGAGGCAGTAAAGGCGTGTCAACGTGACGACGCAGTGATCGCCAAAATTGGACAACTATACGCCGCATGGAAGATCCAGCTCTTGGACCGTTGTGAGGCTGGCTGGGTGGAAGATGGCAGCATCCGTTACCCCATCGTCAATCCTCGGGCCCGCTGTGGGGGCCCAGAACCTGGGGTTCGAAACCTAGGTTTCCCTGATAAAAAGTTCCGCCTCTACGGAGTCTACTGTTTTCGGAAGAACACTGATGTCCAGTCAACACAGGCTCCCAAAGAAACCACAACCAAACTGGCTAATAGCACCAGAAGCATCTGAAAGTGCAAAATACCAGTTACTAGCATCATGGCTTCCATGTTTGACCGACAAGGCTTTTTGCACACCTGCTAGGCTAATAGACAACTAGGCTAGTGCTGAACTCGGGGCTTGTACAATTTAACACACTTGCTTGAAATGAGGTGTCAATCATCTCTAAATTGAGAAAGTAAGCAACTTTTCTCCTCAGAGACATTAGTTTCGCAGTGTACCCTGCATGCAGAATTTAGCCTTCAGGTtttcaatttgttttattttgctgtttccCAGGGAAGACAAAAGTGACTTTAATTAGCGCTATGAAAACAGGAAAGCTAATTTAGCCTTACAATGACTATAGCACATTAGCAATAGCCCTCAATGGCCTGATGATGAGAAAGTAATAATGAACAAAACTTGCATCAGATGCTAGCATGAACTGGCTAGCTTGGCTGGGCTTAGcttgcttattaaaatgaactttcaGAGTTATTGTCATCAAAGCAAGTAGCAAAACTGATTAGCTTTGCCAATTACTATGCACATAACACTAGACACTCgttttttgatacattttgaaTGACCTCGCAAGCAATAACAGAATTAGGCAtgacattttctaaatgtttattacaGTGGTAAAGCTAAAGTATTGTGAATGACAGACTTACATCAGCTGCTTTACTGATTACACTGTCCATTCAGTATTGCAAAATATTGTCTGTGATAATGCATTttagattaaagttatttaccTGTT

Function

symbol description
hapln4 Predicted to enable hyaluronic acid binding activity. Predicted to be involved in central nervous system development and skeletal system development. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Orthologous to human HAPLN4 (hyaluronan and proteoglycan link protein 4).

NR:

description
hyaluronan and proteoglycan link protein 4

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005540 hyaluronic acid binding molecular_function

KEGG:

id description
K06853 HAPLN4; hyaluronan and proteoglycan link protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223912.1 True 2176 mRNA 0.46 6 9613879 9619115

Neighbor

gene id symbol gene type direction distance location
tm6sf2b tm6sf2,LOC107599483,LOC107719666 coding upstream 1378 9602450 ~ 9612501 (+)
polr2eb polr2e,polr2eb,LOC107669821,LOC107599482 coding upstream 107588 9503550 ~ 9506291 (+)
hnrnpm hnrnpm,LOC107599446,LOC107728570,LOC107592680 coding upstream 141377 9465508 ~ 9472502 (+)
rab11ba rab11b,LOC107599444,LOC107592688,LOC107655249,LOC108429533,LOC102310619 coding upstream 159532 9449289 ~ 9454347 (+)
rabgap1l rabgap1l,LOC107728556,LOC107715121,LOC106613570,LOC107592725,LOC106574055,LOC107655181,LOC107669795 coding upstream 253564 9283786 ~ 9360315 (+)
LOC122327676 nr2c2ap,LOC107687739,LOC107728548,LOC107554809,LOC107719618,LOC107599487 coding downstream 265397 9884512 ~ 9886217 (+)
yjefn3 yjefn3,LOC107687717,LOC107655232,LOC107719609,LOC108429551,LOC107554805,LOC103041169,LOC108271278 coding downstream 377364 9996479 ~ 10028474 (+)
cilp2 cilp2,LOC107728576,LOC107687716,LOC107655229,LOC107719612,LOC107599460 coding downstream 411755 10030870 ~ 10044212 (+)
si:ch211-212d10.1 NA coding downstream 451701 10070816 ~ 10072852 (+)
cbarpb LOC107655224,LOC107554820,LOC107719602,LOC107728578,LOC107687734 coding downstream 570099 10189214 ~ 10208785 (+)
G151210 LOC107669820,LOC107592722,LOC107655244,LOC107599472 non-coding upstream 98311 9514740 ~ 9515568 (+)
G151194 NA non-coding upstream 138848 9472986 ~ 9475031 (+)
G151178 NA non-coding upstream 248557 9360428 ~ 9365322 (+)
G151163 NA non-coding upstream 330875 9277690 ~ 9283004 (+)
G150983 NA non-coding upstream 466491 9145211 ~ 9147388 (+)
G151308 NA non-coding downstream 143039 9762154 ~ 9762419 (+)
G151333 NA non-coding downstream 275931 9895046 ~ 9895327 (+)
G151334 NA non-coding downstream 277466 9896581 ~ 9896839 (+)
G151337 cirbpb,cirbp,LOC108271114 non-coding downstream 434803 10053918 ~ 10080145 (+)
G151358 NA non-coding downstream 462667 10081782 ~ 10082620 (+)
G151232 NA other upstream 33728 9577679 ~ 9580151 (+)
march2 march2,LOC107728591,LOC107669840,LOC107655247,LOC107592682,LOC107599445 other upstream 83714 9454838 ~ 9530165 (+)
G150965 NA other upstream 625188 8988186 ~ 8988691 (+)
G150946 NA other upstream 691912 8921698 ~ 8921967 (+)
G150945 NA other upstream 694099 8919279 ~ 8919780 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other downstream 269048 9888163 ~ 9893507 (+)
mef2b LOC107687723,LOC107554810,LOC107728551,LOC107719669,LOC107655235,LOC107599488 other downstream 276326 9895441 ~ 9910793 (+)
LOC122328159 NA other downstream 304432 9923547 ~ 9963634 (+)
gatad2ab gatad2ab,gatad2a,LOC107599456,LOC107728574,LOC107554816 other downstream 351507 9970622 ~ 9993441 (+)
G151620 NA other downstream 1186937 10806052 ~ 10837365 (+)

Expression


Co-expression Network