LOC122328210 (LOC107728584)


Basic Information

Item Value
gene id LOC122328210
gene name LOC107728584
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10376708 ~ 10378690 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223918.1
ATGTATGTTGTGGTTTCATATAAAAATTGATGCAGATGACAAGATGCAACACAAACAATATCTATTTTACTGACACCACAAGCTACAATGGCTTGCAAGCAGCTCAGTGTCTCCACCCATCCTCACATTTATAAAGTGTTTTGCCAGCGAGAGCTCACTGATTGTCTTCATGATGGCCCTCATCACTCTGCTCCTGCTGATCTCTCTGCTTCCACACCTGACCTTCACCGctcGTGCAAATGTGGGTATAGTGAAAGGCAGAGAAGCAAAACCTCACTCCAGACCGTACATGGTTTCCATTCAACTTAATAAGAAACATGTTTGTGGTGGATTCCTCATCTCTGATGAGTTTGTCATGACTGCTGCACACTGCTGGAAAGGATATCCAGAGATTCTGTTGGTTGTGGTCGGTGCTCATGACTTATGGAACAACAAACATTCATACCATGTCGAAGTGAAGTCCTACATCTCACATCCGCACTATACATTCTGTGCGCATTGGAACGACATCATGCTTTTGAGGCTACAGGAAAAGGTCAAACTAAACAACTATGTTAAATGGATATCGTTACCGAAGGAAGGAGATGTCAATGGAGGTATTCTCTGTAGTGTTGCTGGCTGGGGAAAATTGTCGTTGAAAGGTCGAACGACGAGCAGTGTTTTAATGGAGGCAAACATGACTACAATAAACCATGCAGAGTGTCTGCATAAATGGGGATCAAAATACTTCACCTCAAAGATGATCTGTGCACATGGTCGTGGAGGATCCTGCACAGGAGATTCTGGAGGCCCGCTGGTTTGTGGAGACACTGCAGTTGGTGTCACATCTTTTGTGTCCAATAAGAGCTGCAATTCACCTGAGAAGCCTAATGTCTATACTGAGATTTCAGCATTTCTTCCATGGATTCACCAAATTACTAGAAATATTagtaacacttcacaataaggttcaatagttaacattaactactttagttaacatgaacaagAATGACCTGTGAAATAATTAGTTAAATTGCagttaaatgttaatttcaaatgcattattaaaatcccAAGTTTTGATTGTCaacatgaacaaacactgaatgactgtatttttattaaactaacataaacaaagaCTAATAAACAGCAAGAACAataattgtttgttcatgttagtgaacacattaactaacaaatgacaccttattaaAGTGCTACTGAAATATTAAGCGATTTGACAAAAACGaagaaagaaatgttgttttcctGAATTCTTCTGCAAATCTTTCAATAAAAGCGTCAC

Function

NR:

description
PREDICTED: mast cell protease 1-like

GO: NA

KEGG:

id description
K01319 CTSG; cathepsin G

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223918.1 True 1291 mRNA 0.39 5 10376708 10378690

Neighbor

gene id symbol gene type direction distance location
LOC122328213 NA coding upstream 2582 10372204 ~ 10374126 (+)
LOC122328214 NA coding upstream 6195 10369095 ~ 10370513 (+)
LOC122328211 NA coding upstream 14499 10360126 ~ 10362209 (+)
LOC122328212 LOC107728582,LOC107687738 coding upstream 21290 10353846 ~ 10355418 (+)
fgf22 fgf22,LOC107687712,LOC107569930,LOC107719646,LOC107655219,LOC107728567,LOC107569044 coding upstream 29042 10325575 ~ 10347666 (+)
LOC122327872 LOC107728585,LOC107675904,LOC107726539,LOC107675906,LOC107569043 coding downstream 2817 10381507 ~ 10382779 (+)
LOC122328190 LOC107728585,LOC107675904,LOC107726539,LOC107675906,LOC107569043,LOC107728545 coding downstream 6673 10385363 ~ 10392871 (+)
LOC122327181 NA coding downstream 19579 10398269 ~ 10399548 (+)
LOC122327821 LOC107726539,LOC107728585,LOC107675904 coding downstream 21736 10400426 ~ 10401727 (+)
LOC122327820 LOC107675898,LOC107726531 coding downstream 28455 10407145 ~ 10408483 (+)
G151487 NA non-coding upstream 27822 10347829 ~ 10348886 (+)
G151382 NA non-coding upstream 187536 10188578 ~ 10189172 (+)
G151373 NA non-coding upstream 189125 10185635 ~ 10187583 (+)
G151345 LOC107655225,LOC107554818,LOC107728568,LOC107687715,LOC107599463 non-coding upstream 214262 10151480 ~ 10162446 (+)
LOC122327864 NA non-coding upstream 236554 10137300 ~ 10140154 (+)
G151516 NA non-coding downstream 9860 10388550 ~ 10421036 (+)
G151592 NA non-coding downstream 287366 10666056 ~ 10669212 (+)
LOC122327757 creb3l3a,LOC107729712,LOC107675914,LOC107596868,LOC107655213,LOC107719590,LOC107586456 non-coding downstream 322932 10701622 ~ 10709755 (+)
LOC122328232 NA non-coding downstream 330354 10709044 ~ 10709110 (+)
G151603 NA non-coding downstream 331823 10710513 ~ 10711972 (+)
gatad2ab gatad2ab,gatad2a,LOC107599456,LOC107728574,LOC107554816 other upstream 383267 9970622 ~ 9993441 (+)
LOC122328159 NA other upstream 413074 9923547 ~ 9963634 (+)
mef2b LOC107687723,LOC107554810,LOC107728551,LOC107719669,LOC107655235,LOC107599488 other upstream 465915 9895441 ~ 9910793 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other upstream 483201 9888163 ~ 9893507 (+)
G151232 NA other upstream 796557 9577679 ~ 9580151 (+)
G151620 NA other downstream 427362 10806052 ~ 10837365 (+)
onecut3a onecut3,onecut3a,LOC107596910,LOC107676954,LOC107586457,LOC107719659,LOC107655183,LOC105938949 other downstream 495738 10874428 ~ 10892023 (+)
si:dkey-172o19.2 LOC107729689,LOC107676945,LOC107596881,LOC107719578 other downstream 539399 10918089 ~ 10922031 (+)
peak3 LOC107676959,LOC107729697,LOC107593354,LOC107655164,LOC107586433,LOC107719638,LOC107593339 other downstream 556345 10935035 ~ 10994944 (+)
mier2 LOC107729715,LOC107593358,LOC107676949,LOC107699399,LOC107719562,LOC107586401 other downstream 939417 11318107 ~ 11328230 (+)

Expression


Co-expression Network