fam217ba (fam217b,LOC107722732,LOC107705678,LOC107696977,LOC107663058,LOC107551496)


Basic Information

Item Value
gene id fam217ba
gene name fam217b,LOC107722732,LOC107705678,LOC107696977,LOC107663058,LOC107551496
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 5940459 ~ 5945174 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225323.1
AATTTATGCAACCCCAAAATAAGCCGCCTGGTACGTTTACATACGCGCGTTTCTCTTTATAAGCAATCGATACTATCAGCGGTGCAATTAACGCGTTTCACCTAGCTGTTTCACTCATAAACTCCAATTCCCATCATGCCTATCGCAGGATCACGTCGACAACGATGCTTGAACATACAAAGCAGCAGGTAAACAAGTCCGTTCGAGCTGCTGTAGCGATGCTCAGTAACGGCGATTTCCAAGCGTTTCGCTCGTCGCGGGATGACGGGGGTTTCCTAACCGAGGCGCAAAGGTGATTATGTAAATGTTGTCGTTTGCGATAGTTTGTTCGACGCGGTTTAATGGATTGCTCCAATTCTCGGCAAACTGGGAAATATCTGAACCGTGACGCTGGTGTTTCGCTGCGTTTCTGCAATGGTGCTCTTCAGTCGCGCGGTGCGTGTACGCGCTCACGAACGGGACATTGTGGAGCACAGCTGAGAGCTTCAAAACTGCGCCTGTACACTTCATAGCGTTTAATGCGATGGGACCCATCCTGCAGGAAAGAACTGCGTCTGCGACACTGAAGAAGGTGCCAGGCAAGGAGAAGGTTAGaatgaaaaatgcagaaaacactGGGATCGTTGCCAGCAATAATAAGAGGGGAGGAAACGTGAACCAGAATAAGAAACCTCTTAAAAAAACTGTGCCCTTGCATCCAGGGCAAGAGAAGGATCATCTGCCCAAAGCTGAAATTCTCCAAAATGGCATTAAACCAAAGAAAGCTAGGAGTCCGACTGGTGGCACTTGCAAGTTGCGTGGCACACAGGGAGAATCAGACCTACGGCCACCACGTCCCAAACTCTCTTGTCCCGAGCATGGACAGGAGAGGCAGAAAATCCAGCTGGAGCCTCAGTCCTGTAAAGAGATGGTTCAGAGCCAAGTGACCTTGGAGAAGAGCCGTCGCGCTCTGTCGCTCCCCTTGGCTCCTCAGCCAGTGCTGCAGCAGTTCACCCTGCAGCAACAAATCCCAGACCTGGACTCTCTCCGCCTCCTGGAGCACAAGGAGGATGACACGGACAGCGCCAGCGACCTGTCCGACTCCGGGCGGCTCCCTGTGCTGCCTTCCCCTTGCACTCCTCCTCAGCTCAACCTCCGAGCCGAGGTGATCAACTCCATGGACCTGCATCCTCACATACCTGGACCCAGGTCGGTGGAGAACGATGAAGTCCGGTACAGCTACCCAGACTTCCTGCCTCCTCCGTTCAATACCTGGAGCCTGAGGCAGCTCGCCATCTTCCTCAACACCGAAGGCAAGCGGGCTCCCCGGCCGAAACCTGTAGGGCAGCTAGAGAAGTATTTAGAGCGGCTCCTTCAACTGGAGTGGCACCAGATCCAAACCATACAGGCAGAGAGCGGAAGGCACATTGTTCCCATCATCCGAACAAGAAGTCACGCAGCCAGTGTCCTAGTCAACGGCAACCGTCCTAGGCCTCATACTGCTCCTCCAACGCGCCTCAGCTCCCCGAAAAGCTTCCGGCAGGGTCAACGAGCCTTCTTCTCTTCACTGGCCAGCCCATCTTCCACCCAGCTGTCCCGTCCCGTTTGCCCTCACTGCCACATCCGCTATCCGCTCTGCAACGGCACCTGCTCTTCGTACGCCTATCAGCGGCATTCCCGTCTCAGCCCCCTTCTAGAGCGCAAAGCTCCCCCTGCCAGCACCCAAAAGAGAAGCAGCAGCGAAAGCCGCGCTTCCACCTCCGAAAACCGCACCACTTCTAAAAACCAGCAACCGGTCAGTCCTCAGGCGACGAAGGCTCACCAGAAGAACATGCAGGCTGCGGGAAACATGCGCAGGGCGTCCCAAGAACTTAACGCGAACGGCAAAACCCATTCTTCGGTCAGGAAAGGAAAGGCTGCAAGGTCTAACGAGGCGGATAAACAGAAAGATCCACTTGGAGCAAAATGCGGAGGGGTACCTGTCGGTACGAAACGTGAAGGTGGTGGTCCAGGGAAGAAAATGGTGAAGGATGGTCCGAGAGTTGAGGCGGGTGAAGTACGGTTGAGATCTGGTACTAAAAGAACGGTCACCGATGGCTGCGAAGCTAAAGCGACGTCAGCTACCAAGACTACTGGCAAAGTGAAAAATGCTCAGTATGCAAAGTAGTTAGTGCACCTTTCACGCAATTTTCAGTTGcctcaaaaacataatttcgcgtactgtaaaaaaagagcTATTTAAGGCATAATATTATCCCCGCAGTTAACGGTAGTTGTTTGTGAAAAGGATATAAGCGCCGTCACATTGGCAAAAGTTTTGGCAAAATTTCAAGGGGAAAGTCACTTTTAGCTTTCTGCCGGTCAACACGGACCAATTTAAAAAGTGAACAGGATCGCATAGATTCCAATTAACCTGATTAACCATGAAAATTTGCCAGACTACTGCAAATGCGACCACACTTAAAAGGTATCCTTCTCTTTAGAAATCATGCCTTTTCATCGTCATATTGTTTCAGTAGAACTTTAAAGTGCATTTCTTGAATAAgatctgtttattttatctgCCTAAGTATACAAAAGCAGGTTATCTTTACATACTGTACGCACAAATCCTCTATGAAGTCAATGTACTTAAATCTAGTGTGCATGTACATATCTCTTATTTGAGGGAGGTATGGCTGAGAATGTCAGCGTGTGGCTTTGTCTAGTAAGCACTATTGGTCAaagaatgtatatttttttgagatgaataatgaatgttttgtaatgactgtgtatttttgtaaagtGCTATTTACAAGGACTTCTTTTCTTGTTATTTATCAAACCAATGAGTTGACCTTTATTAAGTTAAATAAGAATGTCTTAtctttgaatgttttgaaaCTCATTACTTAGGTTTTCGATGAGTTAGATGTAGTTGAGTTGTGAGTTGTTAGGATTGCTTTCGGTAGTTTTGTGGTTTGTTGCTGGAGAAGGACCCGAGCTGTAAACTGTTAAGATATCATGGTCGAGGTTATCTTTGTTTACTTATTGAGAACCTTTCAGGttattacattgtaattcaTGTCTCTAAAtatagcatgtttttatttttgcaggaaCAATGATGGTAGTGGTTTTGTAGTTTTATATGTACTGTAATGCATTGTCGAGGCACTTGAATATGACTTGAAAGCTGGTACAGGTTGAGGCCATACAGTACGTGGTACCACATTTCCATACTTGATGTGCTGTATGTAGCACCATTTCATCTTGGATGTTATGTACTGTGTCAAGTTTCCTTATcaggcaaaaaaaacacacaaaaatctaCTTTTGTCCAATCATTGTCagattgtgcttttattttgctgGGAGTTTTTGGTAGAGTTGAATGCAGCTATTTTTATGagatacaaaataaacagttttcatTACATCAAAAA

Function

symbol description
fam217b Located in cytosol and nucleoplasm.

NR:

description
PREDICTED: protein FAM217B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225323.1 True 3407 mRNA 0.47 4 5940459 5945174

Neighbor

gene id symbol gene type direction distance location
phactr3a phactr3a,LOC107696979,LOC107705714,LOC108438212,LOC107663052 coding upstream 21296 5893978 ~ 5919163 (+)
wfdc2 wfdc2,LOC107705679,LOC107724186,LOC107551530,LOC107696982,LOC105900119 coding upstream 54982 5883082 ~ 5885477 (+)
snx21 snx21,LOC107724185,LOC107696981,LOC107663062,LOC107551528,LOC107705718 coding upstream 60216 5876999 ~ 5880243 (+)
LOC122329297 phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794 coding upstream 123428 5797063 ~ 5817031 (+)
LOC122329289 uckl1b,uckl1,LOC107723126,LOC107697006,LOC107673346,LOC107601315,LOC107705741,LOC108411658 coding upstream 147293 5779005 ~ 5793166 (+)
si:dkey-178k16.1 si:dkey-178k16.1,LOC107696976,LOC107551534,LOC107722742,LOC107593904,LOC108438207,LOC107705713,LOC108276489 coding downstream 29701 5974875 ~ 6027819 (+)
cntn3a.2 cntn3a.2,LOC107727029,LOC107681399,LOC107705655,LOC108438229,LOC108275552,LOC107568042 coding downstream 257464 6202638 ~ 6270227 (+)
pdzrn3a LOC107727014,LOC107551536,LOC107681378,LOC107705709,LOC107568048,LOC107666574,LOC107666213 coding downstream 347537 6292711 ~ 6315698 (+)
rybpa rybpa,LOC107666235,LOC107705708,LOC107727016,LOC107681380,LOC107568051 coding downstream 378752 6323926 ~ 6332219 (+)
eif4e3 eif4e3,LOC107568047,LOC107705706,LOC107666244,LOC107681400,LOC107727004 coding downstream 388149 6333323 ~ 6338138 (+)
G155263 NA non-coding upstream 15848 5924402 ~ 5924611 (+)
G155262 NA non-coding upstream 20402 5919766 ~ 5920057 (+)
LOC122329298 NA non-coding upstream 144147 5793282 ~ 5796312 (+)
G155204 NA non-coding upstream 161964 5748369 ~ 5778495 (+)
G155078 NA non-coding upstream 542536 5396558 ~ 5397923 (+)
G155295 NA non-coding downstream 189806 6134980 ~ 6137638 (+)
G155330 LOC107727022,LOC107681375 non-coding downstream 430896 6376070 ~ 6380365 (+)
LOC122328815 krt18,LOC107681396,LOC107727028,LOC107551541,LOC107666358,LOC107568050,LOC107705701 non-coding downstream 439387 6384561 ~ 6457809 (+)
G155351 NA non-coding downstream 477049 6422223 ~ 6424080 (+)
G155360 NA non-coding downstream 513384 6458558 ~ 6459029 (+)
LOC122328459 g6pd,LOC107723128,LOC107697003,LOC107594489 other upstream 1104975 4817365 ~ 4835484 (+)
ube2t ube2t,LOC107746510,LOC107707375,LOC107673550 other upstream 2243437 3694652 ~ 3697022 (+)
mitfb LOC107704626,LOC107709243,LOC107748437,LOC108438070,LOC107687304,LOC107558923,LOC107709232 other upstream 2843424 3060509 ~ 3097035 (+)
rbm10 LOC107709225,LOC107687301,LOC107704624,LOC107748436 other upstream 2930442 2995169 ~ 3010017 (+)
LOC122329169 NA other upstream 2996653 2925308 ~ 2943806 (+)
si:ch211-220i18.4 LOC107551506,LOC107666586,LOC107559855,LOC107681367,LOC107705652,LOC108275527,LOC107100285 other downstream 647428 6592602 ~ 6598532 (+)
G155561 NA other downstream 1280820 7225994 ~ 7238919 (+)
tcea2 tcea2,LOC107681409,LOC107551521,LOC107705683,LOC107571665,LOC107666524 other downstream 1353186 7298360 ~ 7305534 (+)
LOC122328506 klhl14,LOC107677170,LOC107599684,LOC107554641,LOC107717384 other downstream 2376531 8321705 ~ 8333376 (+)
G155799 NA other downstream 2542912 8488086 ~ 8488641 (+)

Expression


Co-expression Network