LOC122329289 (uckl1b,uckl1,LOC107723126,LOC107697006,LOC107673346,LOC107601315,LOC107705741,LOC108411658)


Basic Information

Item Value
gene id LOC122329289
gene name uckl1b,uckl1,LOC107723126,LOC107697006,LOC107673346,LOC107601315,LOC107705741,LOC108411658
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 5779005 ~ 5793166 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225514.1
TGTCAAATAGGAAACTAACAATGTCTGCCGTGTGCGGAGACGGAAGGCTCTCAGCGATGGAGTGTGGAGATAAACCATCTATTCGCTGCACAAGTGGCGGTGGGGAAGGCTCTCTGGACAGGCTCCTCCCATCCGTCAATACCAGCCTGTCGCCTCGAAAACGAACCACCAGCCAATGCAAATCAGAGCCTCCGTTGCTGCGGACCAGTAAGAGAACCATCTACACCGCTGGACGCCCGCCGTGGTACAATGAACACGGGACCCAGTCCAAAGAAGCTTTCGTTATCGGGCTTTGTGGAGGCAGCGCTTCAGGCAAAACAACCGTCGCTCGTAAAATCATCGAAGCCTTGGACGTTCCTTGGGTCGTTCTTCTGTCCATGGATTCCTTCTACAAGGTGCTGACGGCCGAACAGCAGCTGCTGGCTGCTAGCAACGATTACAACTTTGACCATCCAGACGCCTTCGACTTCATCCTGCTGGTGCACACTCTCCGTAAACTCAAGCAGGGCAAGAGCGTGAAGATCCCGGTGTATGACTTCACCACACACGGCCGGCAGAAAGAGTGGAAAACGGTGTACGGAGCCAGTGTCATTATATTTGAGGGCATCATGTCGTTTGCAGATAAAGAGCTGCTGAAGCTGCTGGATATGAAGATCTTTGTGGACACCGATTCTGACATCCGGCTGGTACGGAGGCTCAGGAGGGACATCACGGAGCGCGGCCGGGACATCGAGGGAGTCATCAAACAGTACAACAAGTTCGTGAAGCCAGCTTTTGAACAGTACATCGAGCCCACCATGAGACTGGCGGATATCGTGGTGCCCCGGGGTGGCGGCAACATGGTGGCTATTGATCTTATAGTACAGCACGTTCACAGTCAACTGGAGGAGCGTGAACTCAGCGTCAGAGAAAGCTCCGCTGGGATATGTGAGGAGATTTGCTTtcgtttctgttttttttttttttgttgttgttgttgtttttttttatgttttatgctgTTGTATTATAACCATAAGTAGAACAGCAGGGATCTCGGTGTGATTTCCAAAGACTGCACGTTGTCACTCCTGCGTTTTAATGAAGCATCTGATTCAAATGTAAAGCAATGGCATGACAGTTCTGCTCAAGCTGGTCATAGTTTGCGCTGAAGGCGGTGTTTTGTTTGTGACAGGATGCAGTCTTTGACCTGAGTGCTTGTGAAGTTGAATCACGGGATACTCCCCAAAAAAAGCCTGACCTGCTCATGAATCTTTCTAGCAGATGTGATCAACCAAGCTGGAGCGAACAGGGGCTTCAGAAAGTGTTTGAAAACTTAATGCACAACTATTTATGTTTgagcttgtttttaattttgtcatgtttttgaaaagactGTTATGTTCGGCTAGACtgctgtttatttgatcaaaaacacagtaaaaacagcaatattgtgaaatagtgtgtgtgt
>XM_043225515.1
CTGATTTGTTTACGCTCCGCGCCTAAGAACACAAGTCAGAAGCGCTCCTCTCGCCCGCTCTAGACGAGCTGCCCCATAAGAGGCCAGCGGAGGGGGGCGTGCGCTCTCTGCGTGTTTCCAACCTGCTGCTATTAATACCACCCGCCAAACATAATCTGCAGGATAGGTTATCCTCTTACGTTTGTTGGCCGGGTCTGTAGTAGCacattagagagagagagagagagagagagccaacCAAACACTTGTGAcggagaaaacaaaaccaaagcgACGTGGAAAGCACAGTTTTGTTTTCCTCCCCTCCGCATCACTTTCGTTTTCTTCCTGTTCTGTGGCTCTTGCTGCAGGGCAGGCGCTCcgagcgtctgtgtgtgtgtatgtgtgcgtccCAGCACCAAGCTCTCGTCCGTCTGTGTCTGCGCACCCGTCATGAACACACTCCCAGCGTACTCGGGAGCCAGGATCTCAGGCTGCTGGGCTCTCAGGGCGGATGGAAGTGGCGGTGGGGAAGGCTCTCTGGACAGGCTCCTCCCATCCGTCAATACCAGCCTGTCGCCTCGAAAACGAACCACCAGCCAATGCAAATCAGAGCCTCCGTTGCTGCGGACCAGTAAGAGAACCATCTACACCGCTGGACGCCCGCCGTGGTACAATGAACACGGGACCCAGTCCAAAGAAGCTTTCGTTATCGGGCTTTGTGGAGGCAGCGCTTCAGGCAAAACAACCGTCGCTCGTAAAATCATCGAAGCCTTGGACGTTCCTTGGGTCGTTCTTCTGTCCATGGATTCCTTCTACAAGGTGCTGACGGCCGAACAGCAGCTGCTGGCTGCTAGCAACGATTACAACTTTGACCATCCAGACGCCTTCGACTTCATCCTGCTGGTGCACACTCTCCGTAAACTCAAGCAGGGCAAGAGCGTGAAGATCCCGGTGTATGACTTCACCACACACGGCCGGCAGAAAGAGTGGAAAACGGTGTACGGAGCCAGTGTCATTATATTTGAGGGCATCATGTCGTTTGCAGATAAAGAGCTGCTGAAGCTGCTGGATATGAAGATCTTTGTGGACACCGATTCTGACATCCGGCTGGTACGGAGGCTCAGGAGGGACATCACGGAGCGCGGCCGGGACATCGAGGGAGTCATCAAACAGTACAACAAGTTCGTGAAGCCAGCTTTTGAACAGTACATCGAGCCCACCATGAGACTGGCGGATATCGTGGTGCCCCGGGGTGGCGGCAACATGGTGGCTATTGATCTTATAGTACAGCACGTTCACAGTCAACTGGAGGAGCGTGAACTCAGCGTCAGAGAAAGCTCCGCTGGGATATGTGAGGAGATTTGCTTtcgtttctgttttttttttttttgttgttgttgttgtttttttttatgttttatgctgTTGTATTATAACCATAAGTAGAACAGCAGGGATCTCGGTGTGATTTCCAAAGACTGCACGTTGTCACTCCTGCGTTTTAATGAAGCATCTGATTCAAATGTAAAGCAATGGCATGACAGTTCTGCTCAAGCTGGTCATAGTTTGCGCTGAAGGCGGTGTTTTGTTTGTGACAGGATGCAGTCTTTGACCTGAGTGCTTGTGAAGTTGAATCACGGGATACTCCCCAAAAAAAGCCTGACCTGCTCATGAATCTTTCTAGCAGATGTGATCAACCAAGCTGGAGCGAACAGGGGCTTCAGAAAGTGTTTGAAAACTTAATGCACAACTATTTATGTTTgagcttgtttttaattttgtcatgtttttgaaaagactGTTATGTTCGGCTAGACtgctgtttatttgatcaaaaacacagtaaaaacagcaatattgtgaaatagtgtgtgtgt
>XM_043225516.1
TGTTTGatggaaaatattaataagctgcCTGCACAATGGTGCATTCTCATATCATCTTTGAGCGTGAACTCGTGATGCGAACCAGGAGTTGCTAATGTGCTGTCGTTGaggttaaagtgtgtgtgtgtttgtttttaaagcgaCAGTTTAGCAAAAAGGAAAGATTGTCACCTTATTTATCCTCATGTTGTTACAGATTCATATGACTGGGAAACGTGAAACACGAAAGACGTTCACGCTGctcttttacattaaaaaaaaaaaaaagtgaacgtGTGAAATTATTAGTTGTAATATAACTAGGGTTATATTAGATCAACACATTGAGAACATCAGATATGGTAAACAAAATATTAGCTGTACTTCATATAATCAAacatgtagatgagtttgtttcgtAATGAGGAGAATTCACTTTTGCATGGTGTTTGAAGattaatgtatgtataatgatattgtttttaaaccCCAATAACAATAATCACTTTCTCAGATCAAGCTGTTCTGGGTTTCTTGGAAGAGTGACGTAGTTCTGCACAGGCTGATTATTGACCCATAACTATTAATATTTCCTAATAATGTGTTAGCAAGTTTCGCGATGAATGCAGATAAAGTTAAAAGTCTTGGAGAATGGCTGGTCACCCCAAGAAAGAGGGGGAAGaacagagctcattagcatttaaagagacacgCACTGATACGGGAACAAAGTAGTTTTACCAACACAGGCTTATTGGAAATATGTGCCTCTATACGTTTCtgcaaaactgaagaaaaacactaatcactgcagtttcctgttgaaatgaaaacctttattccttttcacacacaaGCTGGAAGGACACTAAACACAAGCGCACACGGAATATGGGGTAAAAAGTTGCTCATCgtcaaaaaatgctgttttggggtttttttagcctccaaatgatttttaaaatatgcttgcATTCACTCATAATCAAATgcctattattttaaataacttacatttcttttgaaaggCAATTGAAAGGTAAAATCTGCCACGAAGTAAAACAGCTGGCAGCGTTTGATATTATTGTTGGtttcgttttgttttaaaatattaaatgtttctccACTGGCAAATATTTCTTCTGTTCTAAGTTCTGACCATTCAGCTGACCTCATACACAAAGTGAAGATGGTTTTGGTGAAGTAGGCTGTTGAAGAGAGGCTCTTgcacacactctttcacagtggtttgttttgttctgacAGTGCAGGGGCAGGGTCCACTGTTTGCCGTCTTATCTGTTATCACACTTTCATATTGTAGCAAGGCAGATAAACTAGAAAGCCAAGGTGATCTCTATTCACACAAGACATAAACTCGCTTTATTCTAGTTTTACCAGTTGTACCATAGATGCATAGATCCACGGTATGTAACCCTGCTTGATCTGACTggctttttaaactttatagaCTGGTAGTCGAGAGTAGgctacgtttttttttgttgtttttttttatgtatacttCTTAATGGACAAGTACACGAACACACCTTCTGTGGACATTTGGCTTTCTCGCCTGCTTTATGGCGGTGGGGAAGGCTCTCTGGACAGGCTCCTCCCATCCGTCAATACCAGCCTGTCGCCTCGAAAACGAACCACCAGCCAATGCAAATCAGAGCCTCCGTTGCTGCGGACCAGTAAGAGAACCATCTACACCGCTGGACGCCCGCCGTGGTACAATGAACACGGGACCCAGTCCAAAGAAGCTTTCGTTATCGGGCTTTGTGGAGGCAGCGCTTCAGGCAAAACAACCGTCGCTCGTAAAATCATCGAAGCCTTGGACGTTCCTTGGGTCGTTCTTCTGTCCATGGATTCCTTCTACAAGGTGCTGACGGCCGAACAGCAGCTGCTGGCTGCTAGCAACGATTACAACTTTGACCATCCAGACGCCTTCGACTTCATCCTGCTGGTGCACACTCTCCGTAAACTCAAGCAGGGCAAGAGCGTGAAGATCCCGGTGTATGACTTCACCACACACGGCCGGCAGAAAGAGTGGAAAACGGTGTACGGAGCCAGTGTCATTATATTTGAGGGCATCATGTCGTTTGCAGATAAAGAGCTGCTGAAGCTGCTGGATATGAAGATCTTTGTGGACACCGATTCTGACATCCGGCTGGTACGGAGGCTCAGGAGGGACATCACGGAGCGCGGCCGGGACATCGAGGGAGTCATCAAACAGTACAACAAGTTCGTGAAGCCAGCTTTTGAACAGTACATCGAGCCCACCATGAGACTGGCGGATATCGTGGTGCCCCGGGGTGGCGGCAACATGGTGGCTATTGATCTTATAGTACAGCACGTTCACAGTCAACTGGAGGAGCGTGAACTCAGCGTCAGAGAAAGCTCCGCTGGGATATGTGAGGAGATTTGCTTtcgtttctgttttttttttttttgttgttgttgttgtttttttttatgttttatgctgTTGTATTATAACCATAAGTAGAACAGCAGGGATCTCGGTGTGATTTCCAAAGACTGCACGTTGTCACTCCTGCGTTTTAATGAAGCATCTGATTCAAATGTAAAGCAATGGCATGACAGTTCTGCTCAAGCTGGTCATAGTTTGCGCTGAAGGCGGTGTTTTGTTTGTGACAGGATGCAGTCTTTGACCTGAGTGCTTGTGAAGTTGAATCACGGGATACTCCCCAAAAAAAGCCTGACCTGCTCATGAATCTTTCTAGCAGATGTGATCAACCAAGCTGGAGCGAACAGGGGCTTCAGAAAGTGTTTGAAAACTTAATGCACAACTATTTATGTTTgagcttgtttttaattttgtcatgtttttgaaaagactGTTATGTTCGGCTAGACtgctgtttatttgatcaaaaacacagtaaaaacagcaatattgtgaaatagtgtgtgtgt
>XM_043225517.1
TGTCAAATAGGAAACTAACAATGTCTGCCGTGTGCGGAGACGGAAGGCTCTCAGCGATGGAGTGTGGAGATAAACCATCTATTCGCTGCACAAGTGGCGGTGGGGAAGGCTCTCTGGACAGGCTCCTCCCATCCGTCAATACCAGCCTGTCGCCTCGAAAACGAACCACCAGCCAATGCAAATCAGAGCCTCCGTTGCTGCGGACCAGTAAGAGAACCATCTACACCGCTGGACGCCCGCCGTGGTACAATGAACACGGGACCCAGTCCAAAGAAGCTTTCGTTATCGGGCTTTGTGGAGGCAGCGCTTCAGGCAAAACAACCGTCGCTCGTAAAATCATCGAAGCCTTGGACGTTCCTTGGGTCGTTCTTCTGTCCATGGATTCCTTCTACAAGGTGCTGACGGCCGAACAGCAGCTGCTGGCTGCTAGCAACGATTACAACTTTGACCATCCAGACGCCTTCGACTTCATCCTGCTGGTGCACACTCTCCGTAAACTCAAGCAGGGCAAGAGCGTGAAGATCCCGGTGTATGACTTCACCACACACGGCCGGCAGAAAGAGTGGAAAACGGTGTACGGAGCCAGTGTCATTATATTTGAGGGCATCATGTCGTTTGCAGATAAAGAGCTGCTGAAGCTGCTGGATATGAAGATCTTTGTGGACACCGATTCTGACATCCGGCTGGTACGGAGGCTCAGGAGGGACATCACGGAGCGCGGCCGGGACATCGAGGGAGTCATCAAACAGTACAACAAGTTCGTGAAGCCAGCTTTTGAACAGTACATCGAGCCCACCATGAGACTGGCGGATATCGTGGTGCCCCGGGGTGGCGGCAACATGGTGGCTATTGATCTTATAGTACAGCACGTTCACAGTCAACTGGAGGAGCGTGAACTCAGCGTCAGCTATTGTTGAACACGGTGCCTCACACGCACTGAAGTTTCCTATGTCTACTACAAAGACTTTCGTTTTTCCGTTGGGCTTGAAACGACAGCacatgagtgagagagagagagaagaggaagagagagacaaaccTGAGGAAGTACAGCCCCCGACACAGGATGTAACAGACCTTTGTGTCAGCGAGAGTGAATGAGAGGATGACAGCTACAACACCGAATCTCAagtttaaagtatttattagtatttgcGTGGTACTGTCACAGCTTGCATAGGTTAAAGAAACGGTTCACTTAAAACATAAACTTACCATTTATGTCATTCTAAACTCAcgtgcttgattttttttttttctttttgtgttttgcatgtTACTTCACGACA
>XM_043225519.1
TGTCAAATAGGAAACTAACAATGTCTGCCGTGTGCGGAGACGGAAGGCTCTCAGCGATGGAGTGTGGAGATAAACCATCTATTCGCTGCACAAGTGGCGGTGGGGAAGGCTCTCTGGACAGGCTCCTCCCATCCGTCAATACCAGCCTGTCGCCTCGAAAACGAACCACCAGCCAATGCAAATCAGAGCCTCCGTTGCTGCGGACCAGTAAGAGAACCATCTACACCGCTGGACGCCCGCCGTGGTACAATGAACACGGGACCCAGTCCAAAGAAGCTTTCGTTATCGGGCTTTGTGGAGGCAGCGCTTCAGGCAAAACAACCGTCGCTCGTAAAATCATCGAAGCCTTGGACGTTCCTTGGGTCGTTCTTCTGTCCATGGATTCCTTCTACAAGGTGCTGACGGCCGAACAGCAGCTGCTGGCTGCTAGCAACGATTACAACTTTGACCATCCAGACGCCTTCGACTTCATCCTGCTGGTGCACACTCTCCGTAAACTCAAGCAGGGCAAGAGCGTGAAGATCCCGGTGTATGACTTCACCACACACGGCCGGCAGAAAGAGTGGAAAACGGTGTACGGAGCCAGTGTCATTATATTTGAGGGCATCATGTCGTTTGCAGATAAAGAGCTGCTGAAGCTGCTGGATATGAAGATCTTTGTGGACACCGATTCTGACATCCGGCTGGTACGGAGGCTCAGGAGGGACATCACGGAGCGCGGCCGGGACATCGAGGGAGTCATCAAACAGTACAACAAGTTCGTGAAGCCAGCTTTTGAACAGTACATCGAGCCCACCATGAGACTGGCGGATATCGTGGTGCCCCGGGGTGGCGGCAACATGGTGGCTATTGATCTTATAGTACAGCACGTTCACAGTCAACTGGAGGAGAGAAAGCTCCGCTGGGATATGTGAGGAGATTTGCTTtcgtttctgttttttttttttttgttgttgttgttgtttttttttatgttttatgctgTTGTATTATAACCATAAGTAGAACAGCAGGGATCTCGGTGTGATTTCCAAAGACTGCACGTTGTCACTCCTGCGTTTTAATGAAGCATCTGATTCAAATGTAAAGCAATGGCATGACAGTTCTGCTCAAGCTGGTCATAGTTTGCGCTGAAGGCGGTGTTTTGTTTGTGACAGGATGCAGTCTTTGACCTGAGTGCTTGTGAAGTTGAATCACGGGATACTCCCCAAAAAAAGCCTGACCTGCTCATGAATCTTTCTAGCAGATGTGATCAACCAAGCTGGAGCGAACAGGGGCTTCAGAAAGTGTTTGAAAACTTAATGCACAACTATTTATGTTTgagcttgtttttaattttgtcatgtttttgaaaagactGTTATGTTCGGCTAGACtgctgtttatttgatcaaaaacacagtaaaaacagcaatattgtgaaatagtgtgtgtgt

Function

symbol description
uckl1b Predicted to enable ATP binding activity and uridine kinase activity. Predicted to be involved in CTP salvage and UMP salvage. Predicted to act upstream of or within nucleoside metabolic process and phosphorylation. Predicted to be active in cytoplasm. Orthologous to human UCKL1 (uridine-cytidine kinase 1 like 1).
uckl1 Predicted to enable uridine kinase activity. Predicted to be involved in pyrimidine nucleoside salvage. Predicted to be located in cytosol. Predicted to be active in cytoplasm.

NR:

description
PREDICTED: uridine-cytidine kinase-like 1 isoform X4

GO:

id name namespace
GO:0044206 UMP salvage biological_process
GO:0044211 CTP salvage biological_process
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0004849 uridine kinase activity molecular_function

KEGG:

id description
K00876 udk, UCK; uridine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225514.1 False 1453 mRNA 0.48 9 5779005 5793166
XM_043225515.1 False 1859 mRNA 0.50 9 5781268 5793166
XM_043225516.1 True 2925 mRNA 0.42 9 5781949 5793166
XM_043225517.1 False 1289 mRNA 0.50 9 5779005 5791848
XM_043225519.1 False 1436 mRNA 0.48 8 5779005 5793166

Neighbor

gene id symbol gene type direction distance location
LOC122329285 LOC107559159,LOC107696943,LOC107746529 coding upstream 126145 5648485 ~ 5652860 (+)
LOC122329193 tspan2b coding upstream 274666 5492958 ~ 5504339 (+)
exosc10 exosc10,LOC107724196,LOC107705727 coding upstream 685835 5083544 ~ 5093170 (+)
slc2a4rg LOC107724195,LOC107696993,LOC107705730,LOC107693552,LOC107594057 coding upstream 703433 5029758 ~ 5075572 (+)
LOC122329057 lime1,LOC107705732,LOC107693551,LOC107696995,LOC107724179,LOC107594445,LOC107578907 coding upstream 750355 4982134 ~ 5028650 (+)
LOC122329297 phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794 coding downstream 3897 5797063 ~ 5817031 (+)
snx21 snx21,LOC107724185,LOC107696981,LOC107663062,LOC107551528,LOC107705718 coding downstream 83833 5876999 ~ 5880243 (+)
wfdc2 wfdc2,LOC107705679,LOC107724186,LOC107551530,LOC107696982,LOC105900119 coding downstream 89916 5883082 ~ 5885477 (+)
phactr3a phactr3a,LOC107696979,LOC107705714,LOC108438212,LOC107663052 coding downstream 100812 5893978 ~ 5919163 (+)
fam217ba fam217b,LOC107722732,LOC107705678,LOC107696977,LOC107663058,LOC107551496 coding downstream 147293 5940459 ~ 5945174 (+)
G155204 NA non-coding upstream 510 5748369 ~ 5778495 (+)
G155078 NA non-coding upstream 381082 5396558 ~ 5397923 (+)
G155063 LOC107724188,LOC107696928,LOC107594416,LOC107693554,LOC107551524,LOC107705722 non-coding upstream 543054 5216936 ~ 5235951 (+)
G155032 NA non-coding upstream 681861 5096528 ~ 5097144 (+)
G155024 NA non-coding upstream 801695 4976669 ~ 4977310 (+)
LOC122329298 NA non-coding downstream 116 5793282 ~ 5796312 (+)
G155262 NA non-coding downstream 126600 5919766 ~ 5920057 (+)
G155263 NA non-coding downstream 131236 5924402 ~ 5924611 (+)
G155295 NA non-coding downstream 341814 6134980 ~ 6137638 (+)
G155330 LOC107727022,LOC107681375 non-coding downstream 582904 6376070 ~ 6380365 (+)
LOC122328459 g6pd,LOC107723128,LOC107697003,LOC107594489 other upstream 943521 4817365 ~ 4835484 (+)
ube2t ube2t,LOC107746510,LOC107707375,LOC107673550 other upstream 2081983 3694652 ~ 3697022 (+)
mitfb LOC107704626,LOC107709243,LOC107748437,LOC108438070,LOC107687304,LOC107558923,LOC107709232 other upstream 2681970 3060509 ~ 3097035 (+)
rbm10 LOC107709225,LOC107687301,LOC107704624,LOC107748436 other upstream 2768988 2995169 ~ 3010017 (+)
LOC122329169 NA other upstream 2835199 2925308 ~ 2943806 (+)
si:ch211-220i18.4 LOC107551506,LOC107666586,LOC107559855,LOC107681367,LOC107705652,LOC108275527,LOC107100285 other downstream 799436 6592602 ~ 6598532 (+)
G155561 NA other downstream 1432828 7225994 ~ 7238919 (+)
tcea2 tcea2,LOC107681409,LOC107551521,LOC107705683,LOC107571665,LOC107666524 other downstream 1505194 7298360 ~ 7305534 (+)
LOC122328506 klhl14,LOC107677170,LOC107599684,LOC107554641,LOC107717384 other downstream 2528539 8321705 ~ 8333376 (+)
G155799 NA other downstream 2694920 8488086 ~ 8488641 (+)

Expression


Co-expression Network