LOC122329193 (tspan2b)


Basic Information

Item Value
gene id LOC122329193
gene name tspan2b
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 5492958 ~ 5504339 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225390.1
GATATTAAGGGCGGTGGGTGTGGATGTTTACTTTCGTTTAcgtatttttaccttttatttttccacagGATTTAATTGAACAGCATCATGGCCGTAGAAGGTGGagcaaaatgtatcaaatacctgctctttttctttaatttcattttctggGTGTGTGGCTTGGCCTTAATAGTTCTGGGCGTATTGGCAAAAGTTTCTATCAACACCACAGCCTTCCTTAATGGATACGCCGGGGCTCCTCTAGTGCTCATAGTGGTGGGAgtcatcatcttcttcatcgCATTCTTTGGCTGCTGTGGCGCCTGGAAGGAGAATCAGTGCATGATCACCATGGTAGggataaaaatgtgcattgtgtgtgctgttgtgTCCTGCGCAGGGGTCTATATCCTGATTGCGGCTGGGGGTCTGGTGATGCTGGTGGGCTTCTTCGGCTGCTGTGGAGCCGTGAGGGAGTCTCAGTGCCTTCTGGGATTGTTTTTCGCCTGTCTTCTGGTCATCTTTGGAGCAGAAGTCGCTGCAGGAGTGTTTGGGTTCCTCAACAAAGACGAGatcattaaggaaataaaacaattctaTGACGAATCGGCAAGAAACAATAGCAGTAACACCACCGTCAAGTCCTACCACAGCATTctaAACTGCTGCGGCTCGAGCAGCGTGTGTCTGGACGCGGCGTCAAACCAGACGTGTCATGAGGCCATTGAAGAGTTTTTCAACAGTAAGCTCTTCATCGTGGGTTATGTTGGGATCGGAATCGCGGGAGTCATGattattggcatgatcttcaGTATGGTCCTGTGCTGTGCCATCCGGAACAGCAGGGAGGTGATCTAACGCAGTCTTCCTCACCTGAACATGACCTTTCACCTTTGACACTTAACTTTTGCTGGACTTGCATATACAACTAGAACATTCCAACCTAGTTCAAGGTATTCTTCTGCCACTCAGGAACCGAGAACAAACTCCGCTTTCATAATCCTGTACACCTCAACCAACCAATGGTTTAGTCCGGTCCTAGTTGTTTAAACTCAGATTGCTGGAtcgtctttatttttaatgcctGCTGGTTGGGTGCAGAGCTGGATCTTCCAATTGCGACAAACACGAGTtcgttttaatataatttagatttCGACTTCTGGTGCACACTGATCTGCTCTTTCAGAGAGTTTGCACATTTATGTATTGATGCTATTCCAGGCTGTTGCTGCGTTGCTTCGCATGCCAgataaaaatattgtgtaatgTGATGCCACTGGTTCTGTGGCAAACCCGCAGCCGCTGGGAATGGCGGAAAGAGGACCCACGGATGCTTTTCGCTTTACGTTTGTACACAAACAAGGTGGTCTTCTACGTCACCGacacatgcaaacaaatgcTTACCGAAAGATGCACACATGCGCACAAAACCCACATGTTGGTGATCTTCAGAAGAACCTTTGTGTCCATACCATCCAGTGAGccctcttaaagggacagctcacccaaaaatcatCTTTCTCacccatgttgttccaatcctgactttataactcacaattgcgagtttatatgaagcaatactgagaaaaaagtcagaattgccgGTTTACAGCGGGTCTTGCGATTCTGACTTCATTTCTCACAGTTGCGAGTTTGTTTCGCAATTCAGAGTAAGGATTGCACGTTTtgagaaaaaagtcaaacttgTGAAATGGAAGGCATAATTGTGATATTgtgcatttactttattttattctggctttaaatacaaaagttattttgaagaatgttggtaaccaaacattGGCTTCCACAGTATGgagaaaaatactatggaagtcaatgcaGGTCAATGGTGTCAACTATAAGGTTACCGACATTCCTCGAAATGCAGTCACAACTCGAGGGTGATTTTCAgctgaactgtccctttaagtctTGCTTGCCCTCCGAATCCCTCCACGCAGTTTCCACTTCAGGAGAGGCACACTAACACATATTCGCATATGCATTTGAACTCACGTCAACACCGATGATCGGGTTTCTGTTATGCAATAACCTGGCTCAACTGAAGCCTCCACTGATAACGGTACAGCCTGGTATTCTCTGGCACGATGGAGCCAAATCTTCTCATTCTCAAGCTGGATTTTATGGTGTAGAGTTGCCTGGTTATTTTACACACGCAGCTAAGTAAAGACCCTGAAGATCCACTGACACTGTCTTGTGCCTTCTACCGTCTATAATTGGTTGCATCCAACCATCTGCGCTGTGAATATGAAACGGATCAGACATGACCGACATCTGAATCACTTGCTTAATTCATTCAACAAACAAGGATGGTTCAAGCAGTGTCCTTAAGTGGAGTTATTAGAAGAAGAACTAGTTTCGCTTACTTTTAAGgcgtccttgttacagtgtaattgtacatttaaGTACTTTTAATATTAACGAACTGCAtgtttgggtaggtttaggctTACTTGCAtgaaatgatgcataattattatttttttattataatgggAAGTACGTGTAACATGTAACAAGAACAACTTAAAGTAAAGTGTGACTAAAGAGTTGTTATTATATCTATATAAGATGCATGAGTAAGTTATAAATGCATTGGTGGACTAATTGGGAGACTGTCCATGTGAATACCTTTGTACTCACGTTCATTTGCTTCGTTTTTTTAGTTGATTTAGCGATTTTGTCGGATGGGACGGTGAAGTAACGAGAGAGGGAAAAGGGATCACTCAAAGCACATccgtgccattttttttttgaggtttaAATTGGATTTAGTTTCTCCGATTTTCAATGCGGTCTGAACCCCACATTTTTAACCTAAAATTTTGGtactggacaaaaaaaaaagtcttcaacTTCAAGTGATCGAATCCAGGTTTCTGAAATGAACACTGAAGTATTTAATCGCATATAGAAACTGGCTTAGTCCAGATGTTCTCGACACATTGtcaaaaatgtcttgttttatcAAAGCATCGATTGCATGTCAAAGAGAAGTCACTTACAAGccaagcagctttctgtttgtCTCACCCAAACTTGAAATGACCGCATTTCTCCTGTAAAATGTTCCTAAGCGACGGTAAATGTGAGCGTATCTTCAGTCTTACGTTCTGTGTACATATCTGTGAGAGTTTCACGAGTTGTCATAGTAGTTGTAGCGATCGTGATCATCTGTCTTGTGCGGTTAATGTGTATAGAGGCAGTTTTGCCCAGTGTACAGCCGTTTTTGTTTCACATCATGCATTTGAAGGtgcctttgtttttattcaaccCGAAAAAACAACGTAGTATTCGGTTGAACGTTGTCGTTGTTTTAAGAGAAGGGATCGGAAAAGGGACgaaatctctttttttgttatttataatagGGCAGCCGTTGGTTGGTCAGATGTATTTCTGCTGGTGCGTCACTGCTGAAGTTCCTCAAGATGAAATGGCATTAGAGTAGCGATTAGGATACGTCGTAGTCGACGCTAACGGAGTGTAACACGTGAAACAAGTGTTCCGTTCGCATTCAATGTTCAAGTAGATCCGTCCTCGTGCCCAAAAGCAACCCTGTTCAGGCTGTACGATAACTAGTACGGAGCATGTAGCGCGGCTTTCGAGTAGAGGCTCTGTCGTAAACTATGAGTGTGTTATTCCTACACTTTGTGTAAGCAatgtcaagattttttttttgtactgtaaacAGAACACTGCAGCCTTTCGATGTTAGTGCTCacaatttgtgtgttttaatttatttttctggaGAGCAAGTTCAAAACAGCATTCGGGTTTCTCAGGAACACTGCAGCACGAGAACAAATAAACTTGTTTGAAGTTTCTGATTCTTGCGTTTTT

Function

symbol description
tspan2b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN2 (tetraspanin 2).

NR:

description
CD81 protein-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225390.1 True 3861 mRNA 0.42 8 5492958 5504339

Neighbor

gene id symbol gene type direction distance location
exosc10 exosc10,LOC107724196,LOC107705727 coding upstream 399788 5083544 ~ 5093170 (+)
slc2a4rg LOC107724195,LOC107696993,LOC107705730,LOC107693552,LOC107594057 coding upstream 417386 5029758 ~ 5075572 (+)
LOC122329057 lime1,LOC107705732,LOC107693551,LOC107696995,LOC107724179,LOC107594445,LOC107578907 coding upstream 464308 4982134 ~ 5028650 (+)
birc7 birc7,LOC107724202,LOC107601340,LOC107696998,LOC107705661,LOC107594456 coding upstream 565519 4920148 ~ 4927439 (+)
cacnb3a cacnb3a,LOC107724200,LOC107705735,LOC107696997,LOC107693548,LOC107601341 coding upstream 579085 4885196 ~ 4913873 (+)
LOC122329285 LOC107559159,LOC107696943,LOC107746529 coding downstream 144146 5648485 ~ 5652860 (+)
LOC122329289 uckl1b,uckl1,LOC107723126,LOC107697006,LOC107673346,LOC107601315,LOC107705741,LOC108411658 coding downstream 274666 5779005 ~ 5793166 (+)
LOC122329297 phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794 coding downstream 292724 5797063 ~ 5817031 (+)
snx21 snx21,LOC107724185,LOC107696981,LOC107663062,LOC107551528,LOC107705718 coding downstream 372660 5876999 ~ 5880243 (+)
wfdc2 wfdc2,LOC107705679,LOC107724186,LOC107551530,LOC107696982,LOC105900119 coding downstream 378743 5883082 ~ 5885477 (+)
G155078 NA non-coding upstream 95035 5396558 ~ 5397923 (+)
G155063 LOC107724188,LOC107696928,LOC107594416,LOC107693554,LOC107551524,LOC107705722 non-coding upstream 257007 5216936 ~ 5235951 (+)
G155032 NA non-coding upstream 395814 5096528 ~ 5097144 (+)
G155024 NA non-coding upstream 515648 4976669 ~ 4977310 (+)
G154997 ddx23 non-coding upstream 577837 4864325 ~ 4915121 (+)
G155204 NA non-coding downstream 244030 5748369 ~ 5778495 (+)
LOC122329298 NA non-coding downstream 288943 5793282 ~ 5796312 (+)
G155262 NA non-coding downstream 415427 5919766 ~ 5920057 (+)
G155263 NA non-coding downstream 420063 5924402 ~ 5924611 (+)
G155295 NA non-coding downstream 630641 6134980 ~ 6137638 (+)
LOC122328459 g6pd,LOC107723128,LOC107697003,LOC107594489 other upstream 657474 4817365 ~ 4835484 (+)
ube2t ube2t,LOC107746510,LOC107707375,LOC107673550 other upstream 1795936 3694652 ~ 3697022 (+)
mitfb LOC107704626,LOC107709243,LOC107748437,LOC108438070,LOC107687304,LOC107558923,LOC107709232 other upstream 2395923 3060509 ~ 3097035 (+)
rbm10 LOC107709225,LOC107687301,LOC107704624,LOC107748436 other upstream 2482941 2995169 ~ 3010017 (+)
LOC122329169 NA other upstream 2549152 2925308 ~ 2943806 (+)
si:ch211-220i18.4 LOC107551506,LOC107666586,LOC107559855,LOC107681367,LOC107705652,LOC108275527,LOC107100285 other downstream 1088263 6592602 ~ 6598532 (+)
G155561 NA other downstream 1721655 7225994 ~ 7238919 (+)
tcea2 tcea2,LOC107681409,LOC107551521,LOC107705683,LOC107571665,LOC107666524 other downstream 1794021 7298360 ~ 7305534 (+)
LOC122328506 klhl14,LOC107677170,LOC107599684,LOC107554641,LOC107717384 other downstream 2817366 8321705 ~ 8333376 (+)
G155799 NA other downstream 2983747 8488086 ~ 8488641 (+)

Expression


Co-expression Network