trnal-uaa_38


Basic Information

Item Value
gene id trnal-uaa_38
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 2486093 ~ 2486175 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_2579
ACCAGgatggccgagtggttaaggcgttGGACTTAAGATCCAATGGACATATGTCCGCGTGGGTTCGAACCCCACTCCTGGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_2579 True 83 tRNA 0.54 1 2486093 2486175

Neighbor

gene id symbol gene type direction distance location
psmb11b LOC107549161,LOC107719954,LOC103370428,LOC105925323,LOC102212057 coding upstream 3086 2479659 ~ 2483007 (+)
slc34a2b LOC107698513,LOC107570774,LOC107669705,LOC107710230 coding upstream 24653 2451690 ~ 2461440 (+)
ndnf ndnf,LOC107549170,LOC107723023,LOC107698518,LOC107558793,LOC107710242,LOC107669702 coding upstream 182060 2287981 ~ 2304033 (+)
LOC122328881 NA coding upstream 383412 2088312 ~ 2102681 (+)
LOC122328839 LOC107549167,LOC107723011 coding upstream 398674 2071739 ~ 2087419 (+)
LOC122328832 utrn,LOC107669681,LOC107570770,LOC107710234,LOC107718008,LOC107549160,LOC108411446,LOC108275814 coding downstream 2544 2488719 ~ 2656582 (+)
stxbp3 LOC107687296,LOC107718001,LOC107571803,LOC107748431,LOC107680060,LOC107565974 coding downstream 312367 2798542 ~ 2809875 (+)
rabggta rabggta,LOC107680063,LOC107687297,LOC107565973 coding downstream 324460 2810635 ~ 2823078 (+)
tgm1 LOC107718009,LOC107558911,LOC107687295 coding downstream 340133 2826308 ~ 2834595 (+)
zgc:113423 LOC107687294,LOC107558912,LOC107717998 coding downstream 377668 2863843 ~ 2869880 (+)
G154230 NA non-coding upstream 211230 2271873 ~ 2274863 (+)
G154207 cpeb2,LOC108276376 non-coding upstream 236540 2215989 ~ 2249553 (+)
G154146 tcp1,LOC107669696,LOC107549175,LOC107558788,LOC107694622 non-coding upstream 352170 2133010 ~ 2133923 (+)
G154156 LOC107558790,LOC107669693 non-coding upstream 374760 2109393 ~ 2111333 (+)
G154155 NA non-coding upstream 377521 2108334 ~ 2108572 (+)
G154285 NA non-coding downstream 171199 2657374 ~ 2657685 (+)
G154365 NA non-coding downstream 310952 2797127 ~ 2797837 (+)
LOC122328886 LOC107748448,LOC107680059,LOC107565963 non-coding downstream 349688 2835863 ~ 2843022 (+)
G154368 NA non-coding downstream 358677 2844852 ~ 2845155 (+)
G154369 NA non-coding downstream 364849 2851024 ~ 2851448 (+)
prdm5 prdm5,LOC107698519,LOC107669703 other upstream 129366 2312722 ~ 2356727 (+)
LOC122328869 LOC107723021,LOC107694620,LOC107577481 other upstream 353260 2129998 ~ 2132833 (+)
LOC122328880 LOC107723010,LOC107683284,LOC107694619 other upstream 414694 2068668 ~ 2071399 (+)
snai1b LOC107694621,LOC107723015,LOC107549169,LOC107558792,LOC107738552,LOC107669687 other upstream 432118 2050032 ~ 2053975 (+)
G154108 plcg1 other upstream 520976 1964273 ~ 1965117 (+)
G154424 NA other downstream 437207 2923382 ~ 2956725 (+)
LOC122329169 NA other downstream 439133 2925308 ~ 2943806 (+)
rbm10 LOC107709225,LOC107687301,LOC107704624,LOC107748436 other downstream 508994 2995169 ~ 3010017 (+)
mitfb LOC107704626,LOC107709243,LOC107748437,LOC108438070,LOC107687304,LOC107558923,LOC107709232 other downstream 574334 3060509 ~ 3097035 (+)
ube2t ube2t,LOC107746510,LOC107707375,LOC107673550 other downstream 1208477 3694652 ~ 3697022 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G288400 NA non-coding CI01000074 null 178056 ~ 178456 (-)
rainbow trout (Oncorhynchus mykiss) trnal-uaa-61 NA coding NC_048589.1 CM023243.3 36699609 ~ 36699691 (+)
eurasian perch (Perca fluviatilis) trnal-uaa_20 NA coding NC_053129.1 CM020926.1 20877864 ~ 20877946 (-)
striped catfish (Pangasianodon hypophthalmus) trnal-uaa_2 NA coding NC_047610.1 CM018556.1 22311806 ~ 22311888 (+)
tiger barb (Puntius tetrazona) trnaq-uug_13 NA non-coding NC_056704.1 CM032073.1 73647 ~ 73718 (+)
mexican tetra (Astyanax mexicanus) trnal-uaa_2 NA coding NC_035905.1 CM008308.1 24307351 ~ 24307433 (+)
mexican tetra (Astyanax mexicanus) trnal-uaa_8 NA coding NC_035911.1 CM008314.1 32513684 ~ 32513766 (+)