G16664


Basic Information

Item Value
gene id G16664
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 6344104 ~ 6347955 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU18669
ATAAAGGCCTGTTCACACCAAAAGTGAAGTGGAAAAGCAAAGCGAATTGCTTTCGGTACATTTGCATTCAGTAAGTTTCCATCGCTTGATGAAAAAAAATTGACCCACTCACCAAAGAAAAATAGCTTTGTTCTGATGTCGAATGAATTTGTTTGATATGAATAGATGAAAAAGGTATGCATTGTATCTATTTCAAAATCTTCTTTGCACTGAATATTCATTGAAATATTTGTGTTTGGTATTAATTGCCTTTAACTCTTACCTTCTCTTTGTATGGGATGCAGACGAGGGGGAACCTGTATTCTCACAGGAGCGGTTGCTGTGGGGTGAAGGATGGTAACAGCAGTGCCCTCTACTGTTCCCAGACGGGAGTGCACACTGATGCGGTACACAGTTTCAGACTGCAGCTCAGAGAAACAGTGACTGCTGCTGCCAGCATCTACTACTTCCTCCTTAGTCTGTTTATCTCTGAGGGCCTGGATGACTATGCGATAACCACTGACTGCTGGTACGGGCCTCCAGGACACACATATACTGGAGTGGTCAGACCGTACCACACTCACGCTGCTCACTCGCAGGCTGGTGGTTTTCCCCTGGGCTGAGGCACTGCCGCCCTCTCTGCTGCGGTACTCAGCAGTCACCAGCACACTGTAACGAGTGTCTGGCTGCAGATTCTGCAGCAGGACGCGCCTCTCTCTGCCTGGCAATGACACTGAGTTCTCCCTCGCATCCCCATTGAGGGGAGTGTAAGACACACGGTACTGCAGCACATGGGCATTGGGGTGAACCCAGGTGACCAGCATACTGACTGCTGTCTCCTCTGAGATGGATAAACTGCTCGGACCACCTCCAGACAAGGTGCTGTATCGAATGGCCACAGCCTCACTCTGAGCCCCATCGGCATATGATGCAGAGAGTGAAATCTGATATTCCTTATCTTCCTCAACCTCTTCCAAGATTGCCCCCTCACTCTCCCCATCTACTGTCAGCTGCCTGAGGTCTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU18669 True 1004 TUCP 0.49 7 6344104 6347955

Neighbor

gene id symbol gene type direction distance location
CI01000001_06307614_06307988 TAF13, TAF13.S coding downstream 35751 6307404 ~ 6308353 (-)
CI01000001_06285353_06286524 NA coding downstream 57580 6283778 ~ 6286524 (-)
CI01000001_06275328_06282035 NA coding downstream 62069 6273801 ~ 6282035 (-)
CI01000001_06209325_06237504 LAMB2L coding downstream 106600 6209311 ~ 6237504 (-)
CI01000001_06167374_06195286 LAMB2 coding downstream 147878 6166681 ~ 6196226 (-)
CI01000001_06507334_06512409 ZNF362B, ZNF362 coding upstream 158218 6506173 ~ 6512409 (-)
CI01000001_06756063_06798700 MEGF6A coding upstream 408083 6756038 ~ 6799081 (-)
CI01000001_06804031_06824280 NA coding upstream 454921 6802876 ~ 6824280 (-)
CI01000001_06932075_06937182 NA coding upstream 583666 6931621 ~ 6937231 (-)
CI01000001_06945753_06946316 NA coding upstream 597798 6945753 ~ 6946365 (-)
G16660 NA non-coding downstream 25424 6318274 ~ 6318680 (-)
G16631 NA non-coding downstream 37940 6293266 ~ 6306164 (-)
G16656 NA non-coding downstream 55112 6288787 ~ 6288992 (-)
G16650 NA non-coding downstream 73756 6269075 ~ 6270348 (-)
G16665 NA non-coding upstream 2440 6350395 ~ 6352768 (-)
G16666 NA non-coding upstream 6618 6354573 ~ 6354923 (-)
G16706 NA non-coding upstream 76487 6424442 ~ 6431183 (-)
G16687 NA non-coding upstream 107614 6455569 ~ 6456382 (-)
G16710 NA non-coding upstream 123364 6471319 ~ 6471610 (-)
G16462 NA other downstream 1114519 5222777 ~ 5229585 (-)
G16332 NA other downstream 1386262 4950689 ~ 4957842 (-)
G15736 NA other downstream 1542709 4800901 ~ 4801395 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other downstream 1615897 4725927 ~ 4728210 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other downstream 1865959 4468209 ~ 4523431 (-)
G16753 NA other upstream 236525 6583054 ~ 6615589 (-)
G17789 NA other upstream 489570 6837525 ~ 6890414 (-)
G17911 NA other upstream 903356 7251311 ~ 7267952 (-)
G18023 NA other upstream 1408546 7756501 ~ 7757520 (-)

Expression


Co-expression Network