G18261 (hs3st2,LOC107550309,LOC107703334,LOC107741797,LOC107574133,LOC107674621)


Basic Information

Item Value
gene id G18261
gene name hs3st2,LOC107550309,LOC107703334,LOC107741797,LOC107574133,LOC107674621
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 8881198 ~ 8882122 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU27278
GTTGAATCGAGAATACTAGAAAAAAGAAACGTACCTGTACCAGTCCAATCCTTTGTCGTAGTTTCTGTCAAAGAAATGTGGTTCGGTCCCAAGAGCTCGAACATCTGGATGAATCCGGATGAACTCCAGCACAGCCCTGGTGCCTCCTTTCTTAACGCCAACTATAAGCGCGTTGGGCAACTTCTTATTCCCGTATTTTGGCGAATTACTGTTATTACTCTGCTTGTGATCTAGCACGTCTTGTGTTTTCTGCAAGACCGAATGTTTGCTTTGGTTGCCAGTGAGGTTTAAGAGACCCACAGCCCTCGTCTCGTCCGCGATAACTCTCGCTTTCGCCGATATAGTGCAATAATGTGACTTCTGTAAAAGTTTTTTACTCCCCGCGTTCTTCAGACGGACGCAGCGGTGCTCCTCCAATCTCTGGTTAGGCATGATTGTACCGGAGCAGAAGAGGATGCTGTAGCATAGATACATGAAAGACAAAGAGAtagtgaatataaaaataaatcttctgCTTAATCTGTTTGAGGATGGCACGATTCGGCTGGACAGGAACCTATATGCCATGTCTCCATGGATGAAAAGACGGCATGTTTTTCTCCGTAAGTTTCTCTGTGAGGTTTGATGGCTGTCTCTTTCTCCCCATCAACTCCGACGGCGCGAACTTACATCTCATTTGGGAAAAGGATAGTTAATATTCCCTACCGGACACGTGAGACGGCAGAAGGTCTGAGCAGAGCAGGTACCAATAACAATAAAGTTTCCAAATCAGCAAAAAACGGACGTAATTCCACTGCCCTTTAGTTTCAGCCTCGCGTCACTTTTGTATCGCCTCAGCGGCGCGCTTGCTTCTGTGCTGATGTAGTGtaggaaatatttaaagtaatccTCTTGTTCGACCTGGTGACGTGACACAGCATCCCGC

Function

symbol description
hs3st2 Predicted to enable [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain and otic vesicle. Human ortholog(s) of this gene implicated in colon cancer; lung cancer; and pancreatic cancer. Orthologous to human HS3ST2 (heparan sulfate-glucosamine 3-sulfotransferase 2).

NR:

description
PREDICTED: heparan sulfate glucosamine 3-O-sulfotransferase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU27278 True 925 lncRNA 0.46 1 8881198 8882122

Neighbor

gene id symbol gene type direction distance location
LOC122342001 cpt1cb,LOC107747872,LOC107667163,LOC100333227,LOC107730771,LOC107689673 coding upstream 26433 8835129 ~ 8854765 (+)
LOC122330982 emp1,LOC107573034,LOC107698066,LOC107732522,LOC107678994 coding upstream 172916 8704444 ~ 8708282 (+)
LOC122341890 grin2bb,LOC107725336,LOC107573036,LOC107698059,LOC108425688,LOC107758357,LOC107661082,LOC107676879 coding upstream 220682 8616280 ~ 8660516 (+)
ddx47 ddx47,LOC106601200 coding upstream 305485 8565400 ~ 8575713 (+)
LOC122341872 bglap,LOC107746533,LOC107676398 coding upstream 324888 8552086 ~ 8556310 (+)
LOC122333359 hs3st4,LOC107703335,LOC107568293,LOC107741793,LOC106601107,LOC105013403,LOC106607349 coding downstream 94202 8976324 ~ 8979876 (+)
colgalt1a colgalt1,LOC107672476,LOC107757371,LOC107711180,LOC107670492,LOC107567242,LOC108429625,LOC108257422 coding downstream 130973 9013095 ~ 9021646 (+)
LOC122341294 gmip,LOC107672475,LOC107670530,LOC107587992,LOC107711163,LOC107757342 coding downstream 142256 9024378 ~ 9041533 (+)
lmx1al lmx1al,LOC107672514,LOC107670451,LOC108429662,LOC108256788,LOC107567229 coding downstream 161316 9043438 ~ 9064147 (+)
atp13a1 atp13a1,LOC107711248,LOC107672485,LOC107757369,LOC107670516 coding downstream 185524 9067646 ~ 9083475 (+)
G18092 NA non-coding upstream 205312 8671661 ~ 8675886 (+)
G18055 NA non-coding upstream 390781 8474293 ~ 8490417 (+)
LOC122331402 NA non-coding upstream 566708 8312389 ~ 8314490 (+)
G18010 NA non-coding upstream 663981 8215252 ~ 8217217 (+)
G18025 fam234b,LOC107576065 non-coding upstream 664167 8216524 ~ 8217031 (+)
G18303 NA non-coding downstream 367977 9250099 ~ 9250630 (+)
G18305 NA non-coding downstream 379848 9261970 ~ 9262239 (+)
G18425 LOC105357980 non-coding downstream 531522 9413644 ~ 9414007 (+)
G18429 NA non-coding downstream 602313 9484435 ~ 9484736 (+)
G18443 NA non-coding downstream 659578 9541700 ~ 9543366 (+)
G18048 NA other upstream 138896 8513349 ~ 8742302 (+)
LOC122342110 wbp11,LOC107751605,LOC107678993 other upstream 317819 8260084 ~ 8563379 (+)
LOC122331854 mgp,LOC107574611,LOC107569876 other upstream 330047 8544291 ~ 8551151 (+)
LOC122341282 LOC107690132,LOC107722730,LOC107572760 other upstream 728304 8150743 ~ 8152894 (+)
G18008 LOC107572757,LOC107745393,LOC107676178,LOC107574638,LOC107690127 other upstream 821341 8056659 ~ 8059857 (+)
LOC122341292 LOC107729471,LOC107687638 other downstream 98469 8980591 ~ 8988810 (+)
pgls pgls,LOC107672478,LOC107711179,LOC107757376,LOC107567243,LOC107670497 other downstream 127928 9010050 ~ 9012178 (+)
brd4 LOC107711252,LOC107587947,LOC107672460,LOC107670433,LOC107757365,LOC107563328 other downstream 256345 9138467 ~ 9183290 (+)
LOC122341719 pet100,LOC107563330,LOC107672445,LOC107587949 other downstream 302277 9184399 ~ 9185660 (+)
aanat2 aanat2,LOC107672440,LOC107670449,LOC107588006,LOC107596820,LOC107754039 other downstream 810827 9692949 ~ 9697915 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_01421301_01451701 HS3ST2 coding CI01000046 null 1420512 ~ 1451931 (-)