LOC122330982 (emp1,LOC107573034,LOC107698066,LOC107732522,LOC107678994)


Basic Information

Item Value
gene id LOC122330982
gene name emp1,LOC107573034,LOC107698066,LOC107732522,LOC107678994
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 8704444 ~ 8708282 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043228383.1
CTCTCGTCTAGCTGATCTGACTTCTTTTCCTCCGCAGTCATGCTGGTTTTACTCGCTGCCATCTTCCTTCTCCACATCGCCTGCATCTGTCTGCTGCTGGCCGCCACCAGCCACAACgcctGGTGGATGACCGACAGCATGTCCACTGATATCTGGTCTCGCTGGGTTCTGGTTAATGGAAACTGGAACTACACCGATATTCCTGCTCACTATCCTAAAGAGTATCTTCAGGCGGTTCAAGCCAGTTCAGTGCTGGCCTGCATCTTCTGCATCCTGGGCCTGTTTGTGTTCGTCGCTCAGCTCTACACACTTCCTAAAGGAAAGCGCTTCCTGTTCACCGGAGCCTTCCAGCTGCTGGCCtGGCTGTGCATCATGATCGCGGCCTCCATCTACACAGACATCTTCCACAGAGACAACGAACAGGGCTGGTACGGAGCCTCCTTCATCCTGGCCTGGATCTCCGTCTGCCTCACCTTCATCTCCTGCATCACCTACTTCATCCTGCGCAAGAAGACGGCGTGAAgaacacactcactctcacacacacacacacacacacacgctgtctcTGATCTCAGAACTGCTCAGGTCGGTCTCCAGCGGCTCAAAGCCTCATATCTTACTCATTATATCCAGCTGAATGTAATCTCAGAGACTCCGTGTCGTTGTAAAGGTCATGTTTTCACTGTAGTCTGTCTCTAGTGGTTGGTTTGGGCTGTCTAACGCTCGTCCTTCTCTTGCGTTCTCTACTAACCTTCTGTTCTGCGTTTCCTGAAAGGATCACGAGCTGATCGTAACTCTGTCTGTGATCAGTCTGCCATGCTTTCGGGAAACGCAGCCCTCATCCTCCCAGCAGCGCACTGCAAAAATATCCTTACCGTTTCAACACGAGACACTAGTTTGATTGTTAggatgttgctttttttaatgaaatccctTCACAGTTCAGAAACCAACAAAGTGCACTGAGTTGGCAATTATCCTTTGTTTTAGTGATCAAGTCTGtgcataatttaaaacactctgaaagacaaaagatttttttttttaatataaatgagtgaatgaatgaataaataaataaaagacactcATGTTGaa

Function

symbol description
emp1 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human EMP1 (epithelial membrane protein 1).

NR:

description
PREDICTED: epithelial membrane protein 1-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043228383.1 True 1101 mRNA 0.48 5 8704444 8708282

Neighbor

gene id symbol gene type direction distance location
LOC122341890 grin2bb,LOC107725336,LOC107573036,LOC107698059,LOC108425688,LOC107758357,LOC107661082,LOC107676879 coding upstream 43928 8616280 ~ 8660516 (+)
ddx47 ddx47,LOC106601200 coding upstream 128731 8565400 ~ 8575713 (+)
LOC122341872 bglap,LOC107746533,LOC107676398 coding upstream 148134 8552086 ~ 8556310 (+)
LOC122341287 LOC107758354,LOC107569871 coding upstream 206165 8493695 ~ 8498279 (+)
LOC122341286 NA coding upstream 210218 8493421 ~ 8494226 (+)
LOC122342001 cpt1cb,LOC107747872,LOC107667163,LOC100333227,LOC107730771,LOC107689673 coding downstream 126847 8835129 ~ 8854765 (+)
LOC122333359 hs3st4,LOC107703335,LOC107568293,LOC107741793,LOC106601107,LOC105013403,LOC106607349 coding downstream 268042 8976324 ~ 8979876 (+)
colgalt1a colgalt1,LOC107672476,LOC107757371,LOC107711180,LOC107670492,LOC107567242,LOC108429625,LOC108257422 coding downstream 304813 9013095 ~ 9021646 (+)
LOC122341294 gmip,LOC107672475,LOC107670530,LOC107587992,LOC107711163,LOC107757342 coding downstream 316096 9024378 ~ 9041533 (+)
lmx1al lmx1al,LOC107672514,LOC107670451,LOC108429662,LOC108256788,LOC107567229 coding downstream 335156 9043438 ~ 9064147 (+)
G18092 NA non-coding upstream 28558 8671661 ~ 8675886 (+)
G18055 NA non-coding upstream 214027 8474293 ~ 8490417 (+)
LOC122331402 NA non-coding upstream 389954 8312389 ~ 8314490 (+)
G18010 NA non-coding upstream 487227 8215252 ~ 8217217 (+)
G18025 fam234b,LOC107576065 non-coding upstream 487413 8216524 ~ 8217031 (+)
G18261 hs3st2,LOC107550309,LOC107703334,LOC107741797,LOC107574133,LOC107674621 non-coding downstream 172916 8881198 ~ 8882122 (+)
G18303 NA non-coding downstream 541817 9250099 ~ 9250630 (+)
G18305 NA non-coding downstream 553688 9261970 ~ 9262239 (+)
G18425 LOC105357980 non-coding downstream 705362 9413644 ~ 9414007 (+)
G18429 NA non-coding downstream 776153 9484435 ~ 9484736 (+)
LOC122342110 wbp11,LOC107751605,LOC107678993 other upstream 141065 8260084 ~ 8563379 (+)
LOC122331854 mgp,LOC107574611,LOC107569876 other upstream 153293 8544291 ~ 8551151 (+)
LOC122341282 LOC107690132,LOC107722730,LOC107572760 other upstream 551550 8150743 ~ 8152894 (+)
G18008 LOC107572757,LOC107745393,LOC107676178,LOC107574638,LOC107690127 other upstream 644587 8056659 ~ 8059857 (+)
G17988 si:dkey-182i3.10,LOC107718276,LOC107690448,LOC107683827 other upstream 738250 7964749 ~ 7966194 (+)
LOC122341292 LOC107729471,LOC107687638 other downstream 272309 8980591 ~ 8988810 (+)
pgls pgls,LOC107672478,LOC107711179,LOC107757376,LOC107567243,LOC107670497 other downstream 301768 9010050 ~ 9012178 (+)
brd4 LOC107711252,LOC107587947,LOC107672460,LOC107670433,LOC107757365,LOC107563328 other downstream 430185 9138467 ~ 9183290 (+)
LOC122341719 pet100,LOC107563330,LOC107672445,LOC107587949 other downstream 476117 9184399 ~ 9185660 (+)
aanat2 aanat2,LOC107672440,LOC107670449,LOC107588006,LOC107596820,LOC107754039 other downstream 984667 9692949 ~ 9697915 (+)

Expression


Co-expression Network