LOC122341890 (grin2bb,LOC107725336,LOC107573036,LOC107698059,LOC108425688,LOC107758357,LOC107661082,LOC107676879)


Basic Information

Item Value
gene id LOC122341890
gene name grin2bb,LOC107725336,LOC107573036,LOC107698059,LOC108425688,LOC107758357,LOC107661082,LOC107676879
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 8616280 ~ 8660516 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235571.1
gtgagagagagagcccGCGCTCTCACCGGCAGCAGCAGCgctggagtgtgtgagtgagtgactgagtgcgtgtgtgtgtatgtgtgtgtgtttggcgcAGTCATAcagatgcagtgtgtgtgtcctgaCAGCGGCATGTGAGCcagcgcgagtgtgtgtgtgtgtgtgtgtgtgttgcgagCAGGTGTTTTTGCCAGGCGTCAGAGGGAGGGACACACACACCCTCCGAACGAGCAGCAGCACGGAGGCGGCCGGACTATTCGcttttttctttcgttttttgttcttcttcttcctcatcGTGGTCGTGGGAGGCGCGTGCTCCTCTCATCTGCTCGCGCTGTCCGTCATCTCCCTGCTCGTCTATTTCTCCATCTATCTCATCTATAATTTCTCTGATTTGTGAGCAGAGTTTGCGGAGGGACTGTGTGTTCTTCTTctgttctcctcctcttcctcctttgATTGTTTGATTGTAGACTATCTCGCTTCATTCATGAGACTGGACTGCGACGCCTTTCCAGATGAGCAAACACACGCGCCTCTTTCTGCTCTTTTACAATTGGACTAAATGCGGAGTGAAGCCGGTTCAGCGGAGGTGAATGTGAACGGGACGCCGGAGCCGCCGGAGGACGTGTGCGCCGCtcgACGCTCTGAAAACCAGGACGCTGAAGATCAGCAGTTccagaggacacacacacacacacacagaacagagaGAAATACTGCAGACCAACTGCTATCGGTGTccacagtAGGGTATGAGAGCGCTACAGAATCATGTGGTTTCTGAGATGGAGGAGTGAAAGTTCGGCTGAAAACACACgagGTTTTTCGCTCCTCCATCATGTCCGTCTGCATTTACCGTGGCTTGGCTCCACCCTCTCAGGAAAGGCGGGTGTGGCTTCATGTGCTGGCTCCGCCCTCGCGTCACTGGCCCTGCCCGTCGCTGCAGCAGCTGCTGGCCGTGTGTCTGCTTCTTCTCCTGCCGCTGGCCGTCCAATCGCGGCGCGAGCGGGGCGGAGGGGGCGTGGCCCACTACATCCCATCATCGGTGGCGCATTATCCACCCGTCTCCAAGCTGCTGCAGGGCCTGAGCATCGCGGTGGTGCTGGTGGGAAACTCCAGTGAGGTGGCACTCGCCGGCACGCGTGACAAGGACGACTTCGGCCACATGCCGTTGGCGCCCAATGTGGAGATGCTCACCATGAACGAGACGGACCCCAAGAGCATCATCAAAAGCATCTGCGACCTGATGACGGAGCACTGGCTGCAGGGCGTGGTGTTCGGAGATGACACCGACCAGGAGGCCATCGCACAGATCCTGGACTTCATCTCCGCGCAGACGCACATCCCTATCCTGGGCGTGAAGGGAGGCTCCTCCATGATCATGGCCGCTAAGGACGATAACTCCATGTTCTTTCAGTTCGGGCCCTCCATCGAGCAGCAGGCCTCTGTGATGCTCAACATCATGGAGGAGTATGACTGGTACATCTTCTCCATCGTCACCACATACTACCCCGGATACCAGGACTTTGTCACCAAGatccgGAGCACCATTGAGAACAGTTTTGTGGGCTGGGAGCTGGAGGAGGTGCTGCTGCTGGACATGTCTGTGGACGATGGAGACGCCAAGATCCAGAACCAGCTGAAGAAGCTGCAGAGCCCCGTCATCCTGCTCTACTCAACCAAAGAAGAGGCTAACATCATCTTCGAGGTGGCTCACTCTGTGGGCCTGACGGGGTACGGGTACACCTGGATCGTGCCGTCTCTGGTGGCGGGCGACGCTGACCACATCCCGCCGAGTTTTCCCACAGGCATGATCTCGGTGTCGTATGACGAGTGGGATTACGGTCTGGAGGCGCGTGTTCGTGACGGCGTGGCTGTGATTGCTTCGGCCACCTCCACCATGATGATGGACCGAGGGCCACACACACTGCTCAAGTCTGAGTGCCACGGGGCCCCAGACAAGAAGAGCCCTATCAGCAACGAAGTGCTcaggtaTCTGATGAACGTGACGTTTGAGGGCCGGAATCTCTCGTTCAGCGAGGACGGCTATCAGATGCACCCCAAACTGGTGATCATCCTGCTGAACAAGGACAGGCAGTGGGACAGAgtgGGCAAGTGGGAGAACGGCTCTCTGTCGATGAAGTTTCACGTGTGGCCGCGGTTCGAGCTGTACTCCGGGACGGAGAACCGTGAGGATGATCACCTGTCCATCGTGACGCTGGAGGAGGCTCCGTTCGTGATGGTGGAGGACGTGGATCCACTGAGCGGCACCTGCATGAGGAACACGGTCCCCTGCCGCAAGCAGCTCAAatcactGAATCGGACGGGGGATTCTGCCGTCTACATCAAGCGCTGCTGTAAAGGATTCTGCATCGACATCCTGAAGAAGATCGCCAAGTCTGTGAAGTTCACCTACGACCTTTATCTGGTCACCAACGGCAAACACGGCAAGAAGATCAACGGCACGTGGAACGGGATGGTGGGAGAGgtGGTGCTGAAGAACGCTCACATGGCTGTCGGCTCACTGACCATCAATGaggagaggtcagaggtcattgaTTTCTCGGTGCCCTTCATAGAGACAGGCATCAGCGTCATGGTGTCTCGAAGCAATGGGACTGTGTCTCCATCTGCGTTCCTCGAGCCATTCAGCGCAGACGTCTGGATCATGATGTTCGTCATGCTGCTGCTGGTTTGTGCCATCGCCGTGTTTGTCTTTGAATACTTCAGTCCCGTGGGCTACAATCGTCGTCTCATCGACGGCAGAGAGGCCGGTGGTCCGTCGTTCACCATCGGAAAGGCCATCTGGCTGCTCTGGGGTTTGGTCTTCAATAACTCCGTTCCAGTGCAGAACCCCAGAGGAACCACCAGCAAGATCATGGTGTCCGTCTGGGCCTTCTTTGCCGTGATTTTCTTGGCCAGCTATACTGCTAACCTGGCAGCGTTTATGATCCAGGAAGAGTATGTGGACCAGGTGTCGGGCCTCAGTGACAAAAAGtttcaGAGACCCAACGACTTCTCCCCGCCGTTTCGCTTTGGGACGGTGCCAAACGGCAGCACCGAGAGAAACATCCGCAATAACTATAAAGAGATGCACTCCTACATGGTGAAATTCCACCAGCGCAATGTGGATGAAGCGCTCTACAGTCTGAAGACCGGGAAGCTGGATGCCTTCATTTATGACGCGGCGGTGCTGAACTACATGGCAGGCAGAGACGAGGGATGCAAGCTGGTCACTATCGGCTCCGGGAAGGTGTTCGCCTCCACCGGCTACGGCATCGCCATCCAGAAGGACTCGGGCTGGAAGAGACAGGTGGACCTCGCCATCCTGCAGCTCTTTGGAGATGgtgatATGGAGGAGTTTGAGGCTCTCTGGCTCACTGGGATCTGTCACCACGAGAAGAATGAAGTGATGAGCAGTCAGCTGGATGTGGACAATATGGCGGGTGTGTTCTACATGCTGGGTGCCGCCATGGCTCTGTCGCCTATCACCTTCATCGCTGAACATGTCTTCTACTGGCACCTGCGCTTCTGCTTCATGGGCGTGTGTTCTGGGAAGCCAGGGCTCACCTTCACCATCAGCAGGGAGATTTTCAGCTGCATTCACGGAGTAGAAATCGAAGATAAGAGTTCAGCGCTCAATTCGCCCTCGGCTACCATGAACAACACACACTCGAATATCCTGCGTCTACTGCGCACCGCCAAGAACATGGCGTCCCTCTCCGGGGTCAACGGCTCTCCGCACAGCGCTCTGGATTTCATCCGTCGAGAGTCCTCCGTCTACGACATCAGCGAGCATCGCCGCAGCCTGGCTGGACACTCGGACTGCAAGGCCCCCTACCTGCCCGAGGACAACATGTTCAGCGACTACATCAGCGAGGTGGAGCGTACCTTCGGGAACCTGCACCTGAAGGACAGCAACCTGTACCAGGACCACTACCTGCACCACCACGGGGGCTCCACGCTGGGGCTGACAGGCCCCAACCGGCCCCACAGCCTGGGCTCCAGCAGTTCTCTGGAGGGCGGCATGTTTGACTGCGACAGCCTGGGCGGAGGTGTAGCCCCCATCTTCACCACACAGCCGCGCTCTGCGCTAACGCACAGGAATATGAGTAAATTCGACCTGCTGCAGAGCCAGACTCCTCCGTCTGGACCGGGATTGAAGCAGGGACTGGCTGACCTGTACGGAAAGTTCTCCTTTAAAGGTGGAGCTTCCAGTTCGGGATACATCGCAGGGCATGACCGGTTCTGCAGCGGAGCTGACGACGGTAACATCCGCTCCGACGTGTCTGACATTTCCACTCATACTGTCACCTACGGCAATCTGGAAGGAAATGCAAAGAAACGCAAGCAGTATAGAGACAGTTTAAAGAAGCGGCCAGCATCAGCAAAGTCCCGCAGGGAACTCGACGAGATCGAGCTGGGTTACCGCCGCCGCCagcatcaccaccaccaccacggACACCGCTCAGCTTCGCCTCCGTCCGAACGGAAACGAGGCGTGAGCTCCACCTCATATCTGCTTCAGGACAAGGAAAGCCTGAGGGATTTCTACCTGGATCAATTCCGGCCCAAGGAGGGGGTGCCGCAGTGGGAACATGTGGATCTTACCGATGGCCCCAGCGGGGGAGGAGGCAACTGCACCAGTTTGGTGTCTGTAGATGACTTCCTAAAAAGCAAACCTAAGAAAACGGAGAGCGGCGAGTGGGAATGTCGCAGCTGTCGGGCCAGCAGTGCAGGCAGCAAGCACGGAGCAGGAGTTCTGCACGTCGGGAGTGGCTGCGTGGCATCGGGAGCCGCAGGAAGAGTCGGAAGCAGCCGTCCCAGTTCTGCCACTTGTATGCGGTGCGAAGCCTGCAAGAAGTCTGGAAACCTGTACGACATCAGCGAGGACAGTAACCACCTGCTGGAGCAACTGGGAGGCAGCAGGGGCCAGACGCCATCACAGCGCCGCAGGGCCTTCAGTGGGAGGCCGTTACGCAGGCAACACTCCTATGATGCATTCGTGGACCTGCAGCGAGAAGAGTTAAGTGGAATAGGCGCGCCTCCTATGTTATGTGCAGTACCTCCACCACGCAGCGTCAGCCTCAAGGAGCGGGAGCGCTGCATGGATGCCTCCTTCGCACACATATTTGAGCGCCCCGAGCAGGACACGGAGCGAGACCCGCTGTTCTACGGAGCCACCGAGAGAGGTGCGGGATCACCATTTGGGTTGCAGAACGCCTCCCCACAGGCGCCTGTGGGAGAGAGGGACCTGAGAGACAGAGGACTCCTTGAGGGGCCTGTTCACGCTTTATCTATCCTCTATCCCGACCGAACCGACCACAACCCCTTCATCCCTACATTCGGAGATGACCAGTGCCTGCTGCACGGTGCCAAGTCCTACTACGTTACCAAGCAGCAGTCGCAGCACGGGATTTGCTCAGCCCCATGGGCTTCGCCATGCGAGCTGTGCATGGGGAACCACCACACCAGCAAGCTCAGCCTCGGCCCTCCTCGACCGTTCACCGGCAGCAACGGACACGTCGAGAAACTCTCCAGCATAGAGTCTGACGTGTGAGAATGAGTCCAGATTTTAGCAGGACATGCAGAACTTGAGAGaactgaaaatgtcatttcctGTGAAGTTCACGTTTGCACCGTTGGGTTTATCTCCACAAGCTGGTGAGAAGAACAAGAGCACGTCCATCTGCCACGTCAGATGGCCACCCAAACAGCCCAGTCCTGTACTCTTGTCTTTTGTGAAGATACAATcatgaaagcataaaaaatgtgcattgatttgttttttgttttttttgaaacagGGTAATAACTGTAACTCAGAGATGTAGTGAAGACACTGCTGACTGCTGGTAATCTGATGTTGAAATTGGGTTTCATTTGTCTGTCGTTTTTCTGAGGCCTTTGCTGAGCATTGGGGTTTAGAGTTTTTGAATGTGACGATCAATCCAGTCTCCGCATCAACCTAACGCATCCATGGCAACAGCCTCTCCCATGCTGGTTACTGCCGTGAAACACGCGTGCATTCGTGGAAGTGCACAATCCTCTGTTTTCTGCCGTCATTTATATTTGAGTCTCTACTGCCGTGATATTTCATATCCAATAAGAAACCGTGTTGATACGCCTTCGGTTACGCTCACGTGACTCTCGCTCAGAAGTTGAGAAATGAGGGACATGAGATGACAGTATCAACTTTTGGTTGTAAATACATTTCTCTTTATATAAGCCAACAAGGTCTACCTTTAATATAGCTTTTTCAAGTATAaccaaaataaagataaaaacagaacaaaataacaaaaacataaaatatgcaaaatttaGCTAAAGCATTATAACTCATGATAAGTGATATTTTTAAGCGatagtttgctttttaaatccATGTTTATTACTTGATTCTGATAGTTTACCGCCTCTTAACCcggctttattttaaggatttaCCTTTATTCAGATTTACCTTT

Function

symbol description
grin2bb Predicted to enable NMDA glutamate receptor activity. Predicted to be involved in excitatory postsynaptic potential and long-term synaptic potentiation. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of NMDA selective glutamate receptor complex. Predicted to be active in postsynaptic density membrane. Human ortholog(s) of this gene implicated in several diseases, including alcohol use disorder; autosomal dominant non-syndromic intellectual disability 6; bipolar disorder; developmental and epileptic encephalopathy 27; and neurodegenerative disease (multiple). Orthologous to human GRIN2B (glutamate ionotropic receptor NMDA type subunit 2B).

NR:

description
PREDICTED: glutamate receptor ionotropic, NMDA 2B-like

GO: NA

KEGG:

id description
K05210 GRIN2B; glutamate receptor ionotropic, NMDA 2B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235571.1 True 6479 mRNA 0.55 21 8616280 8660516

Neighbor

gene id symbol gene type direction distance location
ddx47 ddx47,LOC106601200 coding upstream 40567 8565400 ~ 8575713 (+)
LOC122341872 bglap,LOC107746533,LOC107676398 coding upstream 59970 8552086 ~ 8556310 (+)
LOC122341287 LOC107758354,LOC107569871 coding upstream 118001 8493695 ~ 8498279 (+)
LOC122341286 NA coding upstream 122054 8493421 ~ 8494226 (+)
wbp2nl wbp2nl,LOC107569878,LOC107661077,LOC107670540,LOC107749952,LOC107568364 coding upstream 315520 8296132 ~ 8300760 (+)
LOC122330982 emp1,LOC107573034,LOC107698066,LOC107732522,LOC107678994 coding downstream 43928 8704444 ~ 8708282 (+)
LOC122342001 cpt1cb,LOC107747872,LOC107667163,LOC100333227,LOC107730771,LOC107689673 coding downstream 174613 8835129 ~ 8854765 (+)
LOC122333359 hs3st4,LOC107703335,LOC107568293,LOC107741793,LOC106601107,LOC105013403,LOC106607349 coding downstream 315808 8976324 ~ 8979876 (+)
colgalt1a colgalt1,LOC107672476,LOC107757371,LOC107711180,LOC107670492,LOC107567242,LOC108429625,LOC108257422 coding downstream 352579 9013095 ~ 9021646 (+)
LOC122341294 gmip,LOC107672475,LOC107670530,LOC107587992,LOC107711163,LOC107757342 coding downstream 363862 9024378 ~ 9041533 (+)
G18055 NA non-coding upstream 125863 8474293 ~ 8490417 (+)
LOC122331402 NA non-coding upstream 301790 8312389 ~ 8314490 (+)
G18010 NA non-coding upstream 399063 8215252 ~ 8217217 (+)
G18025 fam234b,LOC107576065 non-coding upstream 399249 8216524 ~ 8217031 (+)
G18016 NA non-coding upstream 512863 8103050 ~ 8103417 (+)
G18092 NA non-coding downstream 11145 8671661 ~ 8675886 (+)
G18261 hs3st2,LOC107550309,LOC107703334,LOC107741797,LOC107574133,LOC107674621 non-coding downstream 220682 8881198 ~ 8882122 (+)
G18303 NA non-coding downstream 589583 9250099 ~ 9250630 (+)
G18305 NA non-coding downstream 601454 9261970 ~ 9262239 (+)
G18425 LOC105357980 non-coding downstream 753128 9413644 ~ 9414007 (+)
LOC122342110 wbp11,LOC107751605,LOC107678993 other upstream 52901 8260084 ~ 8563379 (+)
LOC122331854 mgp,LOC107574611,LOC107569876 other upstream 65129 8544291 ~ 8551151 (+)
LOC122341282 LOC107690132,LOC107722730,LOC107572760 other upstream 463386 8150743 ~ 8152894 (+)
G18008 LOC107572757,LOC107745393,LOC107676178,LOC107574638,LOC107690127 other upstream 556423 8056659 ~ 8059857 (+)
G17988 si:dkey-182i3.10,LOC107718276,LOC107690448,LOC107683827 other upstream 650086 7964749 ~ 7966194 (+)
LOC122341292 LOC107729471,LOC107687638 other downstream 320075 8980591 ~ 8988810 (+)
pgls pgls,LOC107672478,LOC107711179,LOC107757376,LOC107567243,LOC107670497 other downstream 349534 9010050 ~ 9012178 (+)
brd4 LOC107711252,LOC107587947,LOC107672460,LOC107670433,LOC107757365,LOC107563328 other downstream 477951 9138467 ~ 9183290 (+)
LOC122341719 pet100,LOC107563330,LOC107672445,LOC107587949 other downstream 523883 9184399 ~ 9185660 (+)
aanat2 aanat2,LOC107672440,LOC107670449,LOC107588006,LOC107596820,LOC107754039 other downstream 1032433 9692949 ~ 9697915 (+)

Expression


Co-expression Network