G18949


Basic Information

Item Value
gene id G18949
gene name NA
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11368893 ~ 11369752 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU28236
CAGGAACTAACCGTTCAGTTCTGTTTCATAAGAGTTTTTCTGGGAGAGGCCTCGACGGTCAAGCGCTGGTCTTTCTGGCCCGAGATCCGTGTCAAGCCTCTCAGCATGATGGAAAGCTGGAGCTCAGTAACTTCCGTCCGTCACGAGGACAGACTCACTCCAGAGACGAACATGGCCCGAAGGACATCATACCACATTATATCCTGCGCAGAGCCAGGGCACAGAACAGGACGCAAAACCGTGAGGGGTTTGTGATGAAAGAGATCACCAGCCCTGCTGAGGCCGCGCTGTACCAGACAACCTATCAAACGGCGCATTGCGCCACTTCCAACAGATGTCAGACAAACGAAGCACGCGGACAGCCAGTCCTCCGGCACAGGCACGACATCATTACAGGAGAGGAGAAGGCAGCAGCTGGGCCCGGGGAGGTCAGAAGGCAGTCTGGGGAGAAGGTTCTGTGGGCAGCTCGGCGTTGGGAGATGCACAGCGACTCTTTTCGTTTGTATTGAACGTGTCGGcaataaacagctaa

Function

NR:

description
PREDICTED: bromodomain and WD repeat-containing protein 3-like, partial

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU28236 True 532 TUCP 0.33 3 11368893 11369752

Neighbor

gene id symbol gene type direction distance location
si:dkey-66i24.8 LOC107658431,LOC107583056,LOC107729444,LOC107732851 coding upstream 1778 11362983 ~ 11367115 (+)
si:dkey-66i24.7 si:dkey-66i24.7,LOC107674138,LOC107732877,LOC107658448,LOC107563999,LOC107729523 coding upstream 22959 11344269 ~ 11345934 (+)
prf1.1 prf1.1,LOC107658428,LOC107583105,LOC107729447,LOC107732857,LOC107674141,LOC107564016 coding upstream 55524 11308682 ~ 11313369 (+)
prf1.9 LOC107729509,LOC107583107,LOC107658427 coding upstream 60336 11305325 ~ 11308557 (+)
cldni LOC107729510 coding upstream 87152 11278737 ~ 11281741 (+)
clec19a clec19a,LOC107658453,LOC107583104,LOC107736754 coding downstream 38285 11408037 ~ 11413269 (+)
LOC122341817 c1ql1,LOC107729572,LOC107658458,LOC107583048,LOC107674128,LOC103367899,LOC101070426,LOC104923905 coding downstream 127901 11497653 ~ 11515159 (+)
ccdc43 LOC107674137,LOC107729438,LOC107583050,LOC107658459,LOC107721961,LOC107564021 coding downstream 221848 11591600 ~ 11594168 (+)
fzd2 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC107721960,LOC107564008,LOC107674136 coding downstream 233922 11603674 ~ 11606177 (+)
mylk5 LOC107583040,LOC107729567,LOC107658462 coding downstream 246443 11616195 ~ 11629282 (+)
G18960 paqr4a,paqr4,LOC107674132 non-coding upstream 74288 11289747 ~ 11294605 (+)
G18932 ppp1caa,pp1g,LOC105897688 non-coding upstream 97787 11270202 ~ 11271106 (+)
LOC122336311 NA non-coding upstream 175898 11189556 ~ 11192995 (+)
LOC122336295 NA non-coding upstream 205986 11161878 ~ 11162907 (+)
G18982 NA non-coding downstream 1750 11371502 ~ 11375401 (+)
G18946 smg1,LOC107729485,LOC107583093,LOC107658410,LOC107732845 non-coding downstream 10521 11380273 ~ 11380790 (+)
G19123 NA non-coding downstream 67192 11436944 ~ 11437197 (+)
G19126 NA non-coding downstream 70754 11440506 ~ 11441338 (+)
G19184 NA non-coding downstream 342857 11712609 ~ 11719579 (+)
LOC122331261 cox6a2,LOC107564019,LOC107658449,LOC107674165,LOC107583062,LOC103367329 other upstream 33068 11333741 ~ 11335825 (+)
kcna7 LOC106518874,LOC108237811,LOC102213725,LOC102789930,LOC102292646,LOC101488024,LOC100711099,LOC105891650,LOC107729520,LOC107097254,LOC107551170,LOC102237047,LOC107551147,LOC107732850,LOC107729474,LOC107561361,LOC107680852,LOC108434931,LOC108278793 other upstream 526386 10752759 ~ 10842507 (+)
LOC122333995 LOC107561345,LOC107732849,LOC107680844,LOC107729518,LOC107551149,LOC107690331,LOC107732905,LOC107561346,LOC107551141 other upstream 670353 10691890 ~ 10698540 (+)
G18574 LOC107568067,LOC107690317,LOC107733849 other upstream 1265432 10025818 ~ 10103461 (+)
hbbe1.3 LOC107596825,LOC107596828,LOC107674643,LOC107754023,LOC107587921 other upstream 1569097 9798815 ~ 9799796 (+)
kcnc3a kcnc3a,LOC107693499,LOC107548332,LOC107729449,LOC108427388 other downstream 403448 11773200 ~ 11833924 (+)
syt5a syt5a,LOC107658481,LOC107583026,LOC107730742,LOC107548337,LOC107689676 other downstream 515903 11885655 ~ 11893656 (+)
prr12b prr12b,LOC107689691,LOC107729421,LOC107583015,LOC107658420,LOC107554076,LOC107730729 other downstream 657397 12027149 ~ 12049422 (+)
LOC122342134 LOC107729418,LOC107658494,LOC107689662,LOC107554108,LOC107583010,LOC107730753,LOC100007086 other downstream 722851 12092603 ~ 12100852 (+)
pax10 pax10,LOC107554109,LOC107658497,LOC107730756 other downstream 744296 12114048 ~ 12117939 (+)

Expression


Co-expression Network