LOC122331261 (cox6a2,LOC107564019,LOC107658449,LOC107674165,LOC107583062,LOC103367329)


Basic Information

Item Value
gene id LOC122331261
gene name cox6a2,LOC107564019,LOC107658449,LOC107674165,LOC107583062,LOC103367329
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11333741 ~ 11335825 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU28257
GGGGAGGAGTCTCATGGTTTAGGCCAGGACAGACCAAaggacaaacagacagaggtGTAGAAAGAGAAAGTAGCTAATAACTGAGAAACAAAGAACGAAAACACCTGATCAACCTCTTTGGAAGCAGAAGATGGCGATGTCTCCCACTGCTGTGGTGGCCCGCCGGGTTCTTGCCGCTGCATCACATGGAAGCCATGAAGGAGGAGCAAGGACCTGGAAGATCCTGTCCTTTGTATTAGCTCTGCCTGGTGTGGGTGTCTGCATGGCAAACACTTACATGAAGATGCTGGCCCATTCCCATGATCACCCAGAGTTTGTGCCGTACCCACACCTCCGCATTCGAACCAAGCCATGGCCATGGGGTGATGGGAATCACTCTCTCTTCCACAACTCTCATACGAACCCTCTGCCCACCGGTTACGAGGAATCTCACCACTGAGCAGGACGCCCCCTGCTGTCTCAACTGTTTGTCCCCTCAGATGCTGATCAATACTGATGGACAAGCTTCTAACACAAATTCTaacattaacagaaataaacagttttcacattaattgtgtgtgtgtgtgtgtgactgattAAGAAAGGTTGTGAAAAAC
>XM_043228831.1
agacagacagatttcaGTGGGGAGGAGTCTCATGGTTTAGGCCAGGACAGACCAAaggacaaacagacagaggtGTAGAAAGAGAAAGTAGCTAATAACTGAGAAACAAAGAACGAAAACACCTGATCAACCTCTTTGGAAGCAGAGTATAGATGGCGATGTCTCCCACTGCTGTGGTGGCCCGCCGGGTTCTTGCCGCTGCATCACATGGAAGCCATGAAGGAGGAGCAAGGACCTGGAAGATCCTGTCCTTTGTATTAGCTCTGCCTGGTGTGGGTGTCTGCATGGCAAACACTTACATGAAGATGCTGGCCCATTCCCATGATCACCCAGAGTTTGTGCCGTACCCACACCTCCGCATTCGAACCAAGCCATGGCCATGGGGTGATGGGAATCACTCTCTCTTCCACAACTCTCATACGAACCCTCTGCCCACCGGTTACGAGGAATCTCACCACTGAGCAGGACGCCCCCTGCTGTCTCAACTGTTTGTCCCCTCAGATGCTGATCAATACTGATGGACAAGCTTCTAACACAAATTCTaacattaacagaaataaacagttttcacattaa
>XM_043228836.1
gacagacagatttcaGTGGGGAGGAGTCTCATGGTTTAGGCCAGGACAGACCAAaggacaaacagacagaggtGTAGAAAGAGAAAGTAGCTAATAACTGAGAAACAAAGAACGAAAACACCTGATCAACCTCTTTGGAAGCAGAAGATGGCGATGTCTCCCACTGCTGTGGTGGCCCGCCGGGTTCTTGCCGCTGCATCACATGGAAGCCATGAAGGAGGAGCAAGGACCTGGAAGATCCTGTCCTTTGTATTAGCTCTGCCTGGTGTGGGTGTCTGCATGGCAAACACTTACATGAAGATGCTGGCCCATTCCCATGATCACCCAGAGTTTGTGCCGTACCCACACCTCCGCATTCGAACCAAGCCATGGCCATGGGGTGATGGGAATCACTCTCTCTTCCACAACTCTCATACGAACCCTCTGCCCACCGGTTACGAGGAATCTCACCACTGAGCAGGACGCCCCCTGCTGTCTCAACTGTTTGTCCCCTCAGATGCTGATCAATACTGATGGACAAGCTTCTAACACAAATTCTaacattaacagaaataaacagttttcacattaa

Function

symbol description
cox6a2 Predicted to enable enzyme regulator activity. Predicted to be involved in mitochondrial electron transport, cytochrome c to oxygen. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial respiratory chain complex IV. Is expressed in brain; gill; heart; liver; and skeletal muscle. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease recessive intermediate D and cytochrome-c oxidase deficiency disease. Orthologous to several human genes including COX6A2 (cytochrome c oxidase subunit 6A2).

NR:

description
PREDICTED: cytochrome c oxidase subunit 6A, mitochondrial

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005751 mitochondrial respiratory chain complex IV cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU28257 True 599 TUCP 0.49 4 11333759 11335825
XM_043228831.1 False 576 mRNA 0.49 4 11333741 11335780
XM_043228836.1 False 571 mRNA 0.50 4 11333742 11335780

Neighbor

gene id symbol gene type direction distance location
prf1.1 prf1.1,LOC107658428,LOC107583105,LOC107729447,LOC107732857,LOC107674141,LOC107564016 coding upstream 20372 11308682 ~ 11313369 (+)
prf1.9 LOC107729509,LOC107583107,LOC107658427 coding upstream 25184 11305325 ~ 11308557 (+)
cldni LOC107729510 coding upstream 52000 11278737 ~ 11281741 (+)
mybpc2a mybpc2,LOC107729557,LOC107687621,LOC107680879,LOC107732898 coding upstream 327107 10978149 ~ 11006634 (+)
akt1s1 akt1s1,LOC107729505,LOC107687628,LOC107551160,LOC107732888,LOC107577586,LOC107564011 coding upstream 379012 10948678 ~ 10954729 (+)
si:dkey-66i24.7 si:dkey-66i24.7,LOC107674138,LOC107732877,LOC107658448,LOC107563999,LOC107729523 coding downstream 8444 11344269 ~ 11345934 (+)
si:dkey-66i24.8 LOC107658431,LOC107583056,LOC107729444,LOC107732851 coding downstream 27158 11362983 ~ 11367115 (+)
clec19a clec19a,LOC107658453,LOC107583104,LOC107736754 coding downstream 72212 11408037 ~ 11413269 (+)
LOC122341817 c1ql1,LOC107729572,LOC107658458,LOC107583048,LOC107674128,LOC103367899,LOC101070426,LOC104923905 coding downstream 161828 11497653 ~ 11515159 (+)
ccdc43 LOC107674137,LOC107729438,LOC107583050,LOC107658459,LOC107721961,LOC107564021 coding downstream 255775 11591600 ~ 11594168 (+)
G18960 paqr4a,paqr4,LOC107674132 non-coding upstream 39136 11289747 ~ 11294605 (+)
G18932 ppp1caa,pp1g,LOC105897688 non-coding upstream 62635 11270202 ~ 11271106 (+)
LOC122336311 NA non-coding upstream 140746 11189556 ~ 11192995 (+)
LOC122336295 NA non-coding upstream 170834 11161878 ~ 11162907 (+)
LOC122342197 NA non-coding upstream 171298 11162354 ~ 11162443 (+)
G18982 NA non-coding downstream 35677 11371502 ~ 11375401 (+)
G18946 smg1,LOC107729485,LOC107583093,LOC107658410,LOC107732845 non-coding downstream 44448 11380273 ~ 11380790 (+)
G19123 NA non-coding downstream 101119 11436944 ~ 11437197 (+)
G19126 NA non-coding downstream 104681 11440506 ~ 11441338 (+)
G19184 NA non-coding downstream 376784 11712609 ~ 11719579 (+)
kcna7 LOC106518874,LOC108237811,LOC102213725,LOC102789930,LOC102292646,LOC101488024,LOC100711099,LOC105891650,LOC107729520,LOC107097254,LOC107551170,LOC102237047,LOC107551147,LOC107732850,LOC107729474,LOC107561361,LOC107680852,LOC108434931,LOC108278793 other upstream 491234 10752759 ~ 10842507 (+)
LOC122333995 LOC107561345,LOC107732849,LOC107680844,LOC107729518,LOC107551149,LOC107690331,LOC107732905,LOC107561346,LOC107551141 other upstream 635201 10691890 ~ 10698540 (+)
G18574 LOC107568067,LOC107690317,LOC107733849 other upstream 1230280 10025818 ~ 10103461 (+)
hbbe1.3 LOC107596825,LOC107596828,LOC107674643,LOC107754023,LOC107587921 other upstream 1533945 9798815 ~ 9799796 (+)
G18491 NA other upstream 1583861 9739796 ~ 9749880 (+)
G18949 NA other downstream 33068 11368893 ~ 11369752 (+)
kcnc3a kcnc3a,LOC107693499,LOC107548332,LOC107729449,LOC108427388 other downstream 437375 11773200 ~ 11833924 (+)
syt5a syt5a,LOC107658481,LOC107583026,LOC107730742,LOC107548337,LOC107689676 other downstream 549830 11885655 ~ 11893656 (+)
prr12b prr12b,LOC107689691,LOC107729421,LOC107583015,LOC107658420,LOC107554076,LOC107730729 other downstream 691324 12027149 ~ 12049422 (+)
LOC122342134 LOC107729418,LOC107658494,LOC107689662,LOC107554108,LOC107583010,LOC107730753,LOC100007086 other downstream 756778 12092603 ~ 12100852 (+)

Expression


Co-expression Network