XLOC_000684


Basic Information

Item Value
gene id XLOC_000684
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 53266400 ~ 53278288 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002877
GCTTGTTGTATTCACTGAATGCTGCCACaagaaagtgatttttgcataatagtgaTTTAAATGCATAAGAtaccctttttaaaaaaacacacaagacaacagacttttaaaaacatttccttCAGATATATTTGAAATTCAAAAAGGTGTCAGAAATATCGTTTCACATCTctatattattagacatttagtAAAAGGCCAAATATCAGACACAGTAAAGCTCACGTTTATTTCCATGACACTAAATCTtcatccacactgtaaaaaatacacgtaaataagcagttttccatattgtgttaatcatgtttttatttttcctcatttatttatgcttttgaactgcattatgaATGCTTAATATTTCTTCAAACAAATTTTAACCttaaagttggaaaaagtgacttttattaacatttgtaatggtttaaagtgatgtattgtctgcgttggtgttgtaaataatgatacaaaagccttgtaataaactgccagcacatttCCTGtgatttatttctatatataacATTTCTTAtgcataatattattttaaactactaaacaTGTCACTAAAACTCACTGTGACACTGTCGAAGtacattttcaacatcaaaagtggacagagcagagatcaacatcccataatgcaattcagaaccataaataaacaatacagaaGCTGTTGATCAACagatattgtttacagtgtacatcTGACCTTCTATTGTGTTTTTCCACTTGCTCCTATACTCAGATTAGAGAGTGAATCCTGGACCTCggcctcctcctcttcatcatcatcatcatcttcgtcCTCTTCTTCATCGTCCTCCTCCTCATCATAATCATCGTCCTCCTCCTCGTTGTCATCATCATCCAgatatcctcctcctccacctccagaTTCCAGATTTTTCCAGTAAGAGCTGTATCCTGACGCTCCGtatccatcatcatcatcgtctgCTCCGCTCTGACGGCCAAATTTGTGTGTTCGGGCTGCAGGAGGAATCAATCATGCGatgagcaaacaaaaacagcaagtTTCAGAAGACTGGACGAACAGAAAAACGCTTGATTGTGTATTatactgagtgtgtgtttgggggTCAGCAGGAGGAAGTGTGTATCCTCACCACACTGTGCGCACATGGGAAGTTTCTGCACCCATGAGCAGAAATAGCAGAACGCCCTGTTCTTTTGCCTCCTGAAAACACAGAAGGACAAAACATGATTATTAGTCCAGTTAAATAATAAACCTGGCTAATACTTAATCAGAAATACATATAATTACCTTTGACACTTGTCACATTCctaaaaaatggaaataaaaagagGTTTGGTCAGTACATGAATATACCAAACTAACAACAACTTACAGTAAAATAGAAACATGTTATAACATTACAATTTTAGGTTAGATCTAAAGTAGGTAGGAgctttgaaataaattaaaaatatatattaaattactttGGGCTTgaaattattacaataaataaatgttaatagagaatatcttctgtaaaaaaaaacaggtcaaatATCTTtataatgttaattatttataatgttaatgttaacatTACTCATgcaaaaaagaaatgaatatttatttgtattttataagaTCCGTTGTTAagtttttgtacatttaatacattatatacattaaaATGAGGCGATGCACAAATATTCATATTACTGAAGTTAAAGACGTATTAACGCACTGCAGTGGTATTGATCATAACGCATTTGCTGATTTAGATAAATATTCCCAATTCACATTGCAATGTAAAACAGACTCATATTACTACAACTACGTTCATGCACTATAGTGGTATTGatcctcaaaatcaccccagaatggataaaaacatccccagCAACCCACAAAGGTTAAATGATCTGCATTTTAGACATTCATTTAAATCGCTgtgtaaagtaaaaatgtaatttgttcattttaaagtgtGAAACACCAGTAATTACTCGTGTCAAGGCCTGAAATGTCTCACCATGGCGGCGTTACACGGGTGTTTAGCCACATCCACAGTTTCTCTATTCACACGACTCTGCTTTTCCCGCTCCTTTCTGCTCTCAGCCTTCTTCCGAGCTCCAGTCTTCTTCTTGGGCATCTTTTACCTTCAAAAACAGAAATGAAACGTGTTCAACTTTTACTCGCTTCAATCTGAAGCACACTGCGACTCTCTGTTGCTCGGGTTTGATGAACTCCTATGAGTGACGTAACAAACCTGTCAGTCACACGGTTGCTTTTACAACACTAGCGCTTTGGTGTACTGTTTAACACTATATAAATGACCACGTCTGTAAAGCGAAACATACCTGAATAAAAGTTTAATCGAGGAGAAAAAGACAGGTTGCTCACAGCTGATCCCGGTGACTGTGTAACAGTAAGTGGTTCCGGGTGGAAACGTGACCACCAGGCGAAGTTTGTAGTTCCGTTAATATTTACTAGAGTTGTATTTTAAACGTAATAAATCTTTctgtggaaaatatttaaaacattttattcaaaatatctaaaTGATATAAAACCCGTATAAATAAGTGGATTTTGAATAGATATGGAAGATGTAGTCCCACTCCATCACAGAGGAGGGCAACGCACATGTTCAGAGGTGTCCGTAACGGACTGGTTGCCAGATTATGTATAAATCCTCTTCTGCACACTGGATTATTTCAGAGTGAATGCTGCTTATTTTACACTTACTGAATGGAGGAGGATGCATCGtcttttaatattacaaaatctTATGTtggcaaaacttttttttttttacaataaatagtCATAATTCAGCTATTTGTACCCCTTTCCAAAGAGAAATTATCACTGTACTTTATATTCAATCCTATTGTATGTCTTTATTAAAGAATCAACTGATTTGCTGGAAATAAGTGTGGCTGTTACCACAAAAATAGCAtgttagaaataaaattaaaagaaatattcTATTAATTTCTCCACAAATTTTAtccagcagattttttttttacaaaaattacaCAATGGAATAGATGTGAATAGTATTTTTGTAGTAAATTTGAGGAGACTGCTTTACACTTATTTGACCATTGTGCATGCTCAGTCAACTTACGGAGTGAGGtgcaaaaatttattaataacaattttcaGTGTTCTAAAGCCCTTTTATTGTTGTGGAAAATGTACTTTTTGGCTTTACTATGTACCCTAGTCAAGAGGAAAATcgcttttatttaattaatttacttattttgcttacaaTATTTTACTTTCATTAATGTAAATGTCCCaat

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0035270 endocrine system development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0072175 epithelial tube formation biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0035113 embryonic appendage morphogenesis biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0035138 pectoral fin morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0035148 tube formation biological_process
GO:0007389 pattern specification process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0033333 fin development biological_process
GO:0033339 pectoral fin development biological_process
GO:0030901 midbrain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0030902 hindbrain development biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002877 True 3303 lncRNA 0.34 2 53266400 53278288

Neighbor

gene id symbol gene type direction distance location
XLOC_000682 inpp4b coding upstream 41279 52929185 ~ 53225121 (+)
XLOC_000680 smarca5 coding upstream 445446 52792439 ~ 52820954 (+)
XLOC_000681 NA coding upstream 458557 52807632 ~ 52807843 (+)
XLOC_000679 wu:fc75a09 coding upstream 502953 52754085 ~ 52763447 (+)
XLOC_000678 CABZ01021532.1 coding upstream 530275 52735484 ~ 52736125 (+)
XLOC_000685 rnf150a coding downstream 1573 53279861 ~ 53299024 (+)
XLOC_000686 NA coding downstream 41871 53320159 ~ 53320674 (+)
XLOC_000687 NA coding downstream 42643 53320931 ~ 53321338 (+)
XLOC_000688 tbc1d9 coding downstream 43590 53321878 ~ 53361108 (+)
XLOC_000689 AL935166.1 coding downstream 86222 53364510 ~ 53368034 (+)
XLOC_000673 BX323839.1 non-coding upstream 755644 52495043 ~ 52510756 (+)
XLOC_000667 NA non-coding upstream 898202 52363402 ~ 52368198 (+)
XLOC_000668 NA non-coding upstream 898823 52365030 ~ 52367577 (+)
XLOC_000666 LO017718.1 non-coding upstream 903293 52353162 ~ 52363107 (+)
XLOC_000691 NA non-coding downstream 211811 53490099 ~ 53491305 (+)
XLOC_000692 NA non-coding downstream 230217 53508505 ~ 53510623 (+)

Expression


Co-expression Network