XLOC_000673 (BX323839.1)


Basic Information

Item Value
gene id XLOC_000673
gene name BX323839.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 52495043 ~ 52510756 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001139
ACCGTCTCCCTTCTCCTTCCTCTGTCGCTCCATCTCCTGCACCAGGTACACACCCGACAGCTCATTTCCATGAGTGCCGCCACAAACAGCCACACCACCCAGAGCTGGCAGGAACACAGACGCCATCTACAACAGACAAAATGATCATCACCTGAAGCTGAGGATGAACAGCAGCGGTGAGATTTCGTGTCTCAGGATCTCTGGGATAATCCACACTTTTGATAAACTTGAAGACTTCCACATCTCCACCTTCAAATACTGTCCCTCCCGTGGGTTTGACAGTACAGTTGTTACAGGAATCGGCCACACACCGTCTCCCCTCTCCTTCCTCTGTCGCTCCATCTCCTGCACCAGGTACACACCCGACAGCTCATTTCCATGAGTGCCGCCACAAACAGCCACACCACCCAGAGCTGGCAGGAACACAGACGCCATCTACAACAGACAGCCTTTTCTTCAGTCATCAGCTCTGGTTCATCTTTCACACATAATGATGTGGTCACTGAAGCTCGCAATTTCACTGACCGTGAAGCTTCAGCATGGAGCTAATGTTTTGCTGACTAATGCATGCGCTTAAAGGAGAGCATGTGGTGAAGGACGAGACAGAGTGGGAGGAGAAACATGTCAAATGAGAGGACTGCAGTGCTTTGGTTACCAGCTAAACATTACAGCTAGATGGGAAGTGGTTTAATAAACCAGCATTTCCTGTCACAGTTCCCTCCTACTTAAAGGAGGTCTCGCAGCAGGATTGTAGCTGACGGAGGAAGTGGAAATAAAGAGGAAAACCGAGAActgcatttttttccttttatataaTTCAAGTTAATAGTTGCTGACACTTTTAGAGTCAAAAAACAAATAGAGGTAAGGCAAAAATAAAACCTGTGGCTCCCGATGAGTTCTTAAAAAGTAATATGATTGGTCTCTGCAAGAAATGATCattatttacagcattattacctttaatccacagcctttGCAAATTTTGAGCTTCCTGTTTCCACTACCAGTTTCATCCACAAATCTTCTGTAATGTGCTTCTGAAGAAAGAAAAGTCATGTACATCTTGAATGGCTTGAGAGAgactaaattaacagcaaattgtAAATTTTGGG
>TCONS_00001140
AATGATCATCACCTGAAGCTGAGGATGAACAGCAGCGGTGAGATTTCGTGTCTCAGGATCTCTGGGATAATCCACACTTTTGATAAACTTGAAGACTTCCACATCTCCACCTTCAAATACTGTCCCTCCCGTGGGTTTGACAGTACAGTTGTTACAGGAATCGGCCACACACCGTCTCCCCTCTCCTTCCTCTGTCGCTCCATCTCCTGCACCAGGTACACACCCGACAGCTCATTTCCATGAGTGCCGCCACAAACAGCCACACCACCCAGAGCTGGCAGGAACACAGACGCCATCTACAACAGACAGtttgcatgttctccctgtgttgtggctttcctccgggtgctatggtttcccccacaagtccaaagacatgcggtacaggtaaattggCCTTTTCTTCAGTCATCAGCTCTGGTTCATCTTTCACACATAATGATGTGGTCACTGAAGCTCGCAATTTCACTGACCGTGAAGCTTCAGCATGGAGCTAATGTT

Function

GO:

id name namespace
GO:0004997 thyrotropin-releasing hormone receptor activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000095518

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001139 False 1115 lncRNA 0.45 5 52495043 52510756
TCONS_00001140 True 501 lncRNA 0.50 4 52500945 52505169

Neighbor

gene id symbol gene type direction distance location
XLOC_000672 cldnd1b coding upstream 8048 52481332 ~ 52486995 (+)
XLOC_000671 glb1 coding upstream 16297 52462068 ~ 52478746 (+)
XLOC_000670 si:ch211-217k17.9 coding upstream 94383 52398205 ~ 52400660 (+)
XLOC_000669 si:ch211-217k17.8 coding upstream 98779 52392511 ~ 52396264 (+)
XLOC_000667 NA coding upstream 126845 52363402 ~ 52368198 (+)
XLOC_000674 tacr3l coding downstream 7420 52518176 ~ 52538517 (+)
XLOC_000675 abca1a coding downstream 49793 52560549 ~ 52628407 (+)
XLOC_000676 slc44a1a coding downstream 122100 52632856 ~ 52652163 (+)
XLOC_000677 osbp coding downstream 151447 52662203 ~ 52699063 (+)
XLOC_000678 CABZ01021532.1 coding downstream 224728 52735484 ~ 52736125 (+)
XLOC_000668 NA non-coding upstream 127466 52365030 ~ 52367577 (+)
XLOC_000666 LO017718.1 non-coding upstream 131936 52353162 ~ 52363107 (+)
XLOC_000665 NA non-coding upstream 148144 52345955 ~ 52346899 (+)
XLOC_000660 NA non-coding upstream 630278 51850561 ~ 51864765 (+)
XLOC_000681 NA non-coding downstream 296876 52807632 ~ 52807843 (+)
XLOC_000684 NA non-coding downstream 755644 53266400 ~ 53278288 (+)
XLOC_000686 NA non-coding downstream 809403 53320159 ~ 53320674 (+)
XLOC_000687 NA non-coding downstream 810175 53320931 ~ 53321338 (+)
XLOC_000689 AL935166.1 non-coding downstream 853754 53364510 ~ 53368034 (+)

Expression


Co-expression Network