XLOC_000660


Basic Information

Item Value
gene id XLOC_000660
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 51850561 ~ 51864765 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003165
CCTGTGTGTATCACCTGACTGCGTTCGCGGTATTTTTTCCCGCCCGGAAACAGTCTGTTGTTTCAGGTGGAGCAAATGCACATCATTAGTCAAAAAAAGGCAGCATATCGTGCTGTTTTGTCATCGTGTTCACAACAGTAAATCTTCTTGGCCTTCCGGAGATCTGTGTGGAAATCTGGTTCATGTTTGCCCTTGTTGTTCACAGcagaggaagaagaaactaaaatgtttggaaacacttgaagataacacacacatgcacacaccgcAGCATTGTTATCATCCCACATCCAGCGATCCTCTTTCACACGCCAATGACCCCCCAGAATCTGCCCGAATGCCCTCAGGCTGCGCTCTGAAAGACCCCAGAGAGCCAAAGTCAACGCCCCGGACCGACCGAAACGGTGGCGCCCACCCAGGAGTCCGACCTCTCGCCTCGCAGGAGCGTCCAGAAGCGAAAACAATGAGGACCAGCATTGTCATCAAACAACTGGCTTGCAGATCAACCCCAAAACCTGCAGGAGGCAAGAAATTTCACAGCCGCTGGAGAAGCTCTCAAAGTCCGCTCTGGTGGCACACAAATGGGTTTTGCGTTTGGCTGGTGGCTGTAAGCAAAGGGACAGGAGCGAGTCTGAAGAACAGCCAGGCGTATGCAGTGACCCCGAGCGCGTATCGGGCCAAACGCCACGGGCAGCTGATAAGGTCACTTTGCGCTGATCCAGTGCATGATTTGGCTTTTAGGGAACGTCCTTTGTGTTGGGTTACTTGTGGAGATGCTGGTCCTGGTTTACAAATCACAGACAGGCCTCGGGATAAGACTGAACTTTAGCACAAATCCAGTGAAGAGTTGCAGGAGGTGCACCTGGTCTTCAGCTGGTCCAAGAGAAGCGGCTTTGTTGGCCAATCAACATCCCTTGACCAAAAGCCTAGTAGGGTTTCCTATTGGACTTTTAGATTATTGCTAGAAATAATCTTTGTGGCCAGAAAAAAGTTTTGCTAATTAAGATGCATTTGTGTCTCCAAAATCAATCTTGAAGCTTTGATTGAATGGTTGTATGACTTTAACCTCAAagtaaagggatagctcaccccaaa

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003165 True 1095 lncRNA 0.49 3 51850561 51864765

Neighbor

gene id symbol gene type direction distance location
XLOC_000659 dand5 coding upstream 21270 51827046 ~ 51829291 (+)
XLOC_000658 NA coding upstream 24541 51752978 ~ 51826020 (+)
XLOC_000657 prdx2 coding upstream 120699 51721851 ~ 51729862 (+)
XLOC_000656 NA coding upstream 133346 51694751 ~ 51717215 (+)
XLOC_000655 CU464066.1 coding upstream 166943 51683519 ~ 51683618 (+)
XLOC_000661 nfixa coding downstream 31382 51896147 ~ 52086496 (+)
XLOC_000662 rnf11a coding downstream 265399 52130164 ~ 52137313 (+)
XLOC_000663 get3 coding downstream 272763 52137528 ~ 52152993 (+)
XLOC_000664 best2 coding downstream 297877 52162642 ~ 52170135 (+)
XLOC_000665 NA coding downstream 481190 52345955 ~ 52346899 (+)
XLOC_000651 BX547996.1 non-coding upstream 384979 51465468 ~ 51465582 (+)
XLOC_000643 NA non-coding upstream 832010 51015858 ~ 51018551 (+)
XLOC_000666 LO017718.1 non-coding downstream 488397 52353162 ~ 52363107 (+)
XLOC_000667 NA non-coding downstream 498637 52363402 ~ 52368198 (+)
XLOC_000668 NA non-coding downstream 500265 52365030 ~ 52367577 (+)
XLOC_000673 BX323839.1 non-coding downstream 630278 52495043 ~ 52510756 (+)

Expression


Co-expression Network