XLOC_000663 (get3)


Basic Information

Item Value
gene id XLOC_000663
gene name get3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 52137528 ~ 52152993 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001128
TCCGTTCGTAACTGTTCACCCTACAAAGGACATCTTGAATCTAATCTTCCTCTATAACTAGCGTTCTCGCTTCCTTGGCTGAGCCAAAATGGCGGAGTGTGCAGATACTGCATTGGTGTATTCCGACTGACTTGAGCGCAAGATGGCAGCTTCAGTGGAAGACGAGTTTGAGGATGCCCCTGATGTAGAGCCTTTAGAGCCGACCTTAAAGAATATAATAGAGCAGAAATCACTTAAATGGATATTTGTCGGCGGTAAAGGAGGTGTGGGAAAGACGACATGCAGCTGCAGTCTGGCGGTTCAGTTGGCGGCGGTGAGGGAAAGCGTCCTCATCATATCCACAGATCCAGCACACAACATCTCAGACGCCTTTGACCAGAAGTTCTCCAAGGTTCCCACTAAAGTCAAGGGCTACGACAACCTCTTTGCTAtgGAGATCGACCCCAGTCTGGGTGTGGCAGAGCTGCCGGATGAGTTCTTCGAGGAGGACAACATGCTCAGTATGGGGAAAAAGATGATGCAGGAGGCCATGAGTGCTTTCCCTGGCATCGATGAGGCCATGAGCTACGCAGAGGTCATGAGGTTAGTGAAAGGCATGAATTTCTCAGTAGTGGTGTTTGACACGGCTCCCACAGGACACACTCTGCGTCTGCTCAACTTCCCCACCATCGTGGAGCGAGGTTTGGGACGCCTCATGCAGATCAAGAACCAGATCAGCCCCTTCATCTCACAGATGTGTAATATGTTGGGCCTGGGAGACATGAATGCAGATCAGCTGGCGTCCAAACTGGAGGAGACGCTGCCTGTCATCCGCTCCGTCAGCGAGCAGTTCAAGGACCCGGAGCAGACAACGTTCATCTGTGTGTGCATCGCAGAGTTTCTGTCTCTGTACGAGACGGAGCGTCTGATTCAGGAACTTGCCAAGTGTCGCATCGACACACACAACATTATCGTCAACCAGCTGGTTTTCCCTGACAATGAGCGGCCTTGCAAGATGTGTGAAGCCCGACACAAGATTCAGTCAAAGTACCTggaccagatgGAGGATTTATATGAAGATTTCCACATAGTAAAGTTGCCTCTGCTTCCTCACGAGGTTCGAGGAGCCGACAAGGTCAACACTTTCTCCAAGCAGCTGCTGGAGCCCTACAGCCCTCCCAAAAAGTGACTTAAACCATTCCCACGGATCAAACACACACCTCTTCTACACTCGCGCACAAACCCACTGTCTCTCTACTATCTGGTTTTCAGCTAATGCGCTAATTGACGCCGCTCCAGTGATCCGTAATGAATGTTGGGcaagatttaaagggacagttcacccaaataaagttcatttttactctccctcaagtacTTGCAAACATTTATGAGCTTCTtttttccattgaacacaaaagaagatattttgaaaaatgttgaaaactggtaagcattgacttccatagtagtaaaaaCAAATGGAAGTTATTCATTGCAACATTTAAGaacactatttactctccctcacaTGCTTGCAAACATTTAAGTACTTTTTCTTCCATCGAAcacaagacattttgaagaatgtcaaaaaccggtaaccattgacttccatagtaggaaaagcaaatggAAGTTGATGGTTACAACATTCATCAGTTCTATCTATGCTCCCTTTAATGCTTCCAAGCatttatgagcttctttcttcctttgaactcaaaagaagatattttgataaatgttgaaaaccggtcACCATTGACTTGCAAAGTTGGAAAATctaatggaagttaatggttacaacATTCATCAACACGAtctactctccctcaagtgtttgcaaacatttatgagcttctttcttccattaaacagaaaggaaggtattttgaagaatgctgaaaactggtaaccatagACTTCCTTTGTAGGCAAAACTAATGGAACAACTGAAAAGTGAGTTAATAATGATAGCATATAAATTTTGGAGTGAACGGTCCCTTTTAAACGGCCTGTTTAGAAACACACTTGATGATTTGTTGCTTTATGATGACGGTGTTTGTATTTAAGCGTGAGAAAACACTCATTCCTGTTGTGTGTTCAAGCAAAGACATCAAATTGATATGAATTCAGCGATTAAACATCAGAAAAAATGGTCTCTAGTTAAGATTCATCTGATTTCGGATCAGTAAAAGACACCATAAACCTGTGATTGCGATTCTGCTCACCGTTAATTGACTTTATTTTGGGTTCCGGACTGTGTGTTTAGTTTGAGAGGGTCcaaacttaaagggacagtttgccTAAAAGTACAAATTCTGCCATTTTACTCATTGCTTGTTTTAAACCTATATGAGgttaaacgcaaaagaagatattttgacgaaTGTTGGCGCTTACTGATTTCAATAGTATTTTattctacaatggaagtcaataggtgccaacattctttagaatatctccTTCTGTGTCCAACAaaatctcataaaggtttaagaGAAGAGTAAATGATCAGGTACTTtgtagtttttgggtgaactttcccctTTTAATGGGCATAACGCATATTTTAGTGAGTCATTAAAagattagttcaccccaaaatagtTCAATTgacattatttacttgttttgttcttttaaatgcaaaatgagagagattttgaagaatgttcatcTGATTTCGGATCAGTAAAAGACACCATAAATCAGTGATTGCGATTCTGCTCAGCGTTAATAGACTTCATTTTGGATTCCGGACTGTAGTTTTGTCATCTGAGAGAGTCCAAACTTGAAGGAATAGTTCGCCCAAATTGCAAATcctgtcatttactcatctttcatttgttcaaaacctatATGAGATTTCCTCTGagaagcacaaaagaagatattttgaagaatgttagcacttattgactttaatagtattttattttactatggaagtcaataggtgccaacatttctttagaatatctccttttgtgtttaacaatctcataaagatttaaaagaAGAGTAAATTATTGGTTAATTTGTagattttgggtgaacttttcctTTTAATGGGCATAATGCATATTTTAGTGAGTCGTTAAAGagaattagttcacccaaaaaagtccaattgtcatttattaacttgttttattctttataatgcaaaatgagagatagtttgaagaatgttgtatgaatcttttttttacggatctctttttgtgtttaacagaagaaagaaactcgagTAGAGGGTGAGTTAATAGTGACAGAttatacatttttgagtgaaccgtCCCTTTAAATGGCCTGTTTAGAAACACACATGATGGTTTGTTGCTTTATGATGACTGTGTTTGTATTTAGGCGTAAGAAAACACTCATTCTTGGTGTGTGTTCATGAAAGGACATCAAATTGATATGAATTCAGCAATTAAACAGTGTAACTAGTCTCTAGTTTAGATTCATCTGATTTCGGATCAGTAAAAGACACTATAAACCTGTGATTCAAATTTTGCTCAGCgtttatagactttttttttggGTTCCGGACTGTGTTTTTAGTTGAGAGGGTCCAAACTTTAAAGGGGTATTTCACCCAAAATTGCAAATTATGTCATGTACTCATTCTTTAAAACCTATATGAGGttttttcctctgttaaacacaaaagaagatattttgaataatgttggcacttattgacttctgtagtatttttttttatatatggaaGTATATAGGggccaacattctttaaaatatcttctttggtatCCAACAaaatctcataaaggtttaaaggaAGAGTAAATCGTCAGGTAATCtgtagtttttgggtgaactaatccctTTTAAGGGTCATATCGCATATTATAGTGAGTCGTTAAAGAGAAGTAATATCcgattgacattttttttttacttgatttaatctttcataatacaaaatgagagatattttgaagaatgttgtgtGAAAATTCTGACAAAATCTCTCTTTGTGTTGCATTAGACAAATATGGATTGcataaaatgagtaaataatgccTAAAACCCCCATTTTTGGGGATGAACTGTTCTTTTAAACTCGCATTTAATCAACTTCTTCTCGCAATGCATCAGTTGTAATTACCATGTACAAATGTTGTGATTTCAAGATATCTAATTTAATTTTTTGCAGTTTAAGTGGCGTATTTATATAGACTTCTAAGATGCTTTCTGTTCAGATCTTACAGCTTCTATCGCATTTACTTGGGAGATTTAGTTCTTCATCTCAGCTCTTCTTCAGGTTGTTTGGCTGTGATGTCCGCATGCATCAAAACACAGGTACAAACACCTACAAGGAGATCAGAAGCTCATTTAAACACTGCAGGATACCATCAATACTATACTCTACTTGACATTACATGTGTTTACTTGCTTTTCATCATTCTGTGGTTTCACGGCTTGAAGTAAGAGCTCACAAATATAGACAGAGAGATTTCAGTAATTCATTAGTCGTCAGTCAGTTTTCTTAAGGTTTTGTTTCTTATGACTTGTTACTGCCTTTACAAATTTGGCTTCTTTTTGTAGAAGCGCACCAAGTTTCAAAGCAAATAAACTCTCCTCCATCTACTGCA
>TCONS_00001129
ATAACTAGCGTTCTCGCTTCCTTGGCTGAGCCAAAATGGCGGAGTGTGCAGATACTGCATTGGTGTATTCCGACTGACTTGAGCGCAAGATGGCAGCTTCAGTGGAAGACGAGTTTGAGGATGCCCCTGATGTAGAGCCTTTAGAGCCGACCTTAAAGAATATAATAGAGCAGAAATCACTTAAATGGATATTTGTCGGCGGTAAAGGAGGTGTGGGAAAGACGACATGCAGCTGCAGTCTGGCGGTTCAGTTGGCGGCGGTGAGGGAAAGCGTCCTCACGAGGTTCGAGGAGCCGACAAGGTCAACACTTTCTCCAAGCAGCTGCTGGAGCCCTACAGCCCTCCCAAAAAGTGACTTAAACCATTCCCACGGATCAAACACACACCTCTTCTACACTCGCGCACAAACCCACTGTCTCTCTACTATCTGGTTTTCAGCTAATGCGCTAATTGACGCCGCTCCAGTGATCCGTAATGAATGTTGGGcaagatttaaagggacagttcacccaaataaagttcatttttactctccctcaagtacTTGCAAACATTTATGAGCTTCTtttttccattgaacacaaaagaagatattttgaaaaatgttgaaaactggtaagcattgacttccatagtagtaaaaaCAAATGGAAGTTATTCATTGCAACATTTAAGaacactatttactctccctcacaTGCTTGCAAACATTTAAGTACTTTTTCTTCCATCGAAcacaagacattttgaagaatgtcaaaaaccggtaaccattgacttccatagtaggaaaagcaaatggAAGTTGATGGTTACAACATTCATCAGTTCTATCTATGCTCCCTTTAATGCTTCCAAGCatttatgagcttctttcttcctttgaactcaaaagaagatattttgataaatgttgaaaaccggtcACCATTGACTTGCAAAGTTGGAAAATctaatggaagttaatggttacaacATTCATCAACACGAtctactctccctcaagtgtttgcaaacatttatgagcttctttcttccattaaacagaaaggaaggtattttgaagaatgctgaaaactggtaaccatagACTTCCTTTGTAGGCAAAACTAATGGAACAACTGAAAAGTGAGTTAATAATGATAGCATATAAATTTTGGAGTGAACGGTCCCTTTTAAACGGCCTGTTTAGAAACACACTTGATGATTTGTTGCTTTATGATGACGGTGTTTGTATTTAAGCGTGAGAAAACACTCATTCCTGTTGTGTGTTCAAGCAAAGACATCAAATTGATATGAATTCAGCGATTAAACATC

Function

symbol description
get3 Predicted to enable ATP hydrolysis activity. Involved in posttranslational protein targeting to endoplasmic reticulum membrane. Acts upstream of or within synapse assembly. Predicted to be located in endoplasmic reticulum. Predicted to be part of GET complex. Orthologous to human GET3 (guided entry of tail-anchored proteins factor 3, ATPase).

GO:

id name namespace
GO:0006620 posttranslational protein targeting to endoplasmic reticulum membrane biological_process
GO:0007416 synapse assembly biological_process
GO:0045048 protein insertion into ER membrane biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0043529 GET complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-040625-120 Predicted to enable ATP hydrolysis activity. Involved in posttranslational protein targeting to endoplasmic reticulum membrane. Acts upstream of or within synapse assembly. Predicted to be located in endoplasmic reticulum. Predicted to be part of GET complex. Orthologous to human GET3 (guided entry of tail-anchored proteins factor 3, ATPase).

Ensembl:

ensembl_id ENSDARG00000018190

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001128 False 4613 mRNA 0.38 7 52137528 52152993
TCONS_00001129 True 1317 mRNA 0.40 3 52137581 52150510

Neighbor

gene id symbol gene type direction distance location
XLOC_000662 rnf11a coding upstream 215 52130164 ~ 52137313 (+)
XLOC_000661 nfixa coding upstream 51032 51896147 ~ 52086496 (+)
XLOC_000660 NA coding upstream 272763 51850561 ~ 51864765 (+)
XLOC_000659 dand5 coding upstream 308237 51827046 ~ 51829291 (+)
XLOC_000658 NA coding upstream 311508 51752978 ~ 51826020 (+)
XLOC_000664 best2 coding downstream 9649 52162642 ~ 52170135 (+)
XLOC_000665 NA coding downstream 192962 52345955 ~ 52346899 (+)
XLOC_000666 LO017718.1 coding downstream 200169 52353162 ~ 52363107 (+)
XLOC_000667 NA coding downstream 210409 52363402 ~ 52368198 (+)
XLOC_000668 NA coding downstream 212037 52365030 ~ 52367577 (+)
XLOC_000656 NA non-coding upstream 420313 51694751 ~ 51717215 (+)
XLOC_000655 CU464066.1 non-coding upstream 453910 51683519 ~ 51683618 (+)
XLOC_000651 BX547996.1 non-coding upstream 671946 51465468 ~ 51465582 (+)
XLOC_000673 BX323839.1 non-coding downstream 342050 52495043 ~ 52510756 (+)

Expression


Co-expression Network