RNA id: TCONS_00001128


Basic Information

Item Value
RNA id TCONS_00001128
length 4613
RNA type mRNA
GC content 0.38
exon number 7
gene id XLOC_000663
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 52137528 ~ 52152993 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCGTTCGTAACTGTTCACCCTACAAAGGACATCTTGAATCTAATCTTCCTCTATAACTAGCGTTCTCGCTTCCTTGGCTGAGCCAAAATGGCGGAGTGTGCAGATACTGCATTGGTGTATTCCGACTGACTTGAGCGCAAGATGGCAGCTTCAGTGGAAGACGAGTTTGAGGATGCCCCTGATGTAGAGCCTTTAGAGCCGACCTTAAAGAATATAATAGAGCAGAAATCACTTAAATGGATATTTGTCGGCGGTAAAGGAGGTGTGGGAAAGACGACATGCAGCTGCAGTCTGGCGGTTCAGTTGGCGGCGGTGAGGGAAAGCGTCCTCATCATATCCACAGATCCAGCACACAACATCTCAGACGCCTTTGACCAGAAGTTCTCCAAGGTTCCCACTAAAGTCAAGGGCTACGACAACCTCTTTGCTAtgGAGATCGACCCCAGTCTGGGTGTGGCAGAGCTGCCGGATGAGTTCTTCGAGGAGGACAACATGCTCAGTATGGGGAAAAAGATGATGCAGGAGGCCATGAGTGCTTTCCCTGGCATCGATGAGGCCATGAGCTACGCAGAGGTCATGAGGTTAGTGAAAGGCATGAATTTCTCAGTAGTGGTGTTTGACACGGCTCCCACAGGACACACTCTGCGTCTGCTCAACTTCCCCACCATCGTGGAGCGAGGTTTGGGACGCCTCATGCAGATCAAGAACCAGATCAGCCCCTTCATCTCACAGATGTGTAATATGTTGGGCCTGGGAGACATGAATGCAGATCAGCTGGCGTCCAAACTGGAGGAGACGCTGCCTGTCATCCGCTCCGTCAGCGAGCAGTTCAAGGACCCGGAGCAGACAACGTTCATCTGTGTGTGCATCGCAGAGTTTCTGTCTCTGTACGAGACGGAGCGTCTGATTCAGGAACTTGCCAAGTGTCGCATCGACACACACAACATTATCGTCAACCAGCTGGTTTTCCCTGACAATGAGCGGCCTTGCAAGATGTGTGAAGCCCGACACAAGATTCAGTCAAAGTACCTggaccagatgGAGGATTTATATGAAGATTTCCACATAGTAAAGTTGCCTCTGCTTCCTCACGAGGTTCGAGGAGCCGACAAGGTCAACACTTTCTCCAAGCAGCTGCTGGAGCCCTACAGCCCTCCCAAAAAGTGACTTAAACCATTCCCACGGATCAAACACACACCTCTTCTACACTCGCGCACAAACCCACTGTCTCTCTACTATCTGGTTTTCAGCTAATGCGCTAATTGACGCCGCTCCAGTGATCCGTAATGAATGTTGGGcaagatttaaagggacagttcacccaaataaagttcatttttactctccctcaagtacTTGCAAACATTTATGAGCTTCTtttttccattgaacacaaaagaagatattttgaaaaatgttgaaaactggtaagcattgacttccatagtagtaaaaaCAAATGGAAGTTATTCATTGCAACATTTAAGaacactatttactctccctcacaTGCTTGCAAACATTTAAGTACTTTTTCTTCCATCGAAcacaagacattttgaagaatgtcaaaaaccggtaaccattgacttccatagtaggaaaagcaaatggAAGTTGATGGTTACAACATTCATCAGTTCTATCTATGCTCCCTTTAATGCTTCCAAGCatttatgagcttctttcttcctttgaactcaaaagaagatattttgataaatgttgaaaaccggtcACCATTGACTTGCAAAGTTGGAAAATctaatggaagttaatggttacaacATTCATCAACACGAtctactctccctcaagtgtttgcaaacatttatgagcttctttcttccattaaacagaaaggaaggtattttgaagaatgctgaaaactggtaaccatagACTTCCTTTGTAGGCAAAACTAATGGAACAACTGAAAAGTGAGTTAATAATGATAGCATATAAATTTTGGAGTGAACGGTCCCTTTTAAACGGCCTGTTTAGAAACACACTTGATGATTTGTTGCTTTATGATGACGGTGTTTGTATTTAAGCGTGAGAAAACACTCATTCCTGTTGTGTGTTCAAGCAAAGACATCAAATTGATATGAATTCAGCGATTAAACATCAGAAAAAATGGTCTCTAGTTAAGATTCATCTGATTTCGGATCAGTAAAAGACACCATAAACCTGTGATTGCGATTCTGCTCACCGTTAATTGACTTTATTTTGGGTTCCGGACTGTGTGTTTAGTTTGAGAGGGTCcaaacttaaagggacagtttgccTAAAAGTACAAATTCTGCCATTTTACTCATTGCTTGTTTTAAACCTATATGAGgttaaacgcaaaagaagatattttgacgaaTGTTGGCGCTTACTGATTTCAATAGTATTTTattctacaatggaagtcaataggtgccaacattctttagaatatctccTTCTGTGTCCAACAaaatctcataaaggtttaagaGAAGAGTAAATGATCAGGTACTTtgtagtttttgggtgaactttcccctTTTAATGGGCATAACGCATATTTTAGTGAGTCATTAAAagattagttcaccccaaaatagtTCAATTgacattatttacttgttttgttcttttaaatgcaaaatgagagagattttgaagaatgttcatcTGATTTCGGATCAGTAAAAGACACCATAAATCAGTGATTGCGATTCTGCTCAGCGTTAATAGACTTCATTTTGGATTCCGGACTGTAGTTTTGTCATCTGAGAGAGTCCAAACTTGAAGGAATAGTTCGCCCAAATTGCAAATcctgtcatttactcatctttcatttgttcaaaacctatATGAGATTTCCTCTGagaagcacaaaagaagatattttgaagaatgttagcacttattgactttaatagtattttattttactatggaagtcaataggtgccaacatttctttagaatatctccttttgtgtttaacaatctcataaagatttaaaagaAGAGTAAATTATTGGTTAATTTGTagattttgggtgaacttttcctTTTAATGGGCATAATGCATATTTTAGTGAGTCGTTAAAGagaattagttcacccaaaaaagtccaattgtcatttattaacttgttttattctttataatgcaaaatgagagatagtttgaagaatgttgtatgaatcttttttttacggatctctttttgtgtttaacagaagaaagaaactcgagTAGAGGGTGAGTTAATAGTGACAGAttatacatttttgagtgaaccgtCCCTTTAAATGGCCTGTTTAGAAACACACATGATGGTTTGTTGCTTTATGATGACTGTGTTTGTATTTAGGCGTAAGAAAACACTCATTCTTGGTGTGTGTTCATGAAAGGACATCAAATTGATATGAATTCAGCAATTAAACAGTGTAACTAGTCTCTAGTTTAGATTCATCTGATTTCGGATCAGTAAAAGACACTATAAACCTGTGATTCAAATTTTGCTCAGCgtttatagactttttttttggGTTCCGGACTGTGTTTTTAGTTGAGAGGGTCCAAACTTTAAAGGGGTATTTCACCCAAAATTGCAAATTATGTCATGTACTCATTCTTTAAAACCTATATGAGGttttttcctctgttaaacacaaaagaagatattttgaataatgttggcacttattgacttctgtagtatttttttttatatatggaaGTATATAGGggccaacattctttaaaatatcttctttggtatCCAACAaaatctcataaaggtttaaaggaAGAGTAAATCGTCAGGTAATCtgtagtttttgggtgaactaatccctTTTAAGGGTCATATCGCATATTATAGTGAGTCGTTAAAGAGAAGTAATATCcgattgacattttttttttacttgatttaatctttcataatacaaaatgagagatattttgaagaatgttgtgtGAAAATTCTGACAAAATCTCTCTTTGTGTTGCATTAGACAAATATGGATTGcataaaatgagtaaataatgccTAAAACCCCCATTTTTGGGGATGAACTGTTCTTTTAAACTCGCATTTAATCAACTTCTTCTCGCAATGCATCAGTTGTAATTACCATGTACAAATGTTGTGATTTCAAGATATCTAATTTAATTTTTTGCAGTTTAAGTGGCGTATTTATATAGACTTCTAAGATGCTTTCTGTTCAGATCTTACAGCTTCTATCGCATTTACTTGGGAGATTTAGTTCTTCATCTCAGCTCTTCTTCAGGTTGTTTGGCTGTGATGTCCGCATGCATCAAAACACAGGTACAAACACCTACAAGGAGATCAGAAGCTCATTTAAACACTGCAGGATACCATCAATACTATACTCTACTTGACATTACATGTGTTTACTTGCTTTTCATCATTCTGTGGTTTCACGGCTTGAAGTAAGAGCTCACAAATATAGACAGAGAGATTTCAGTAATTCATTAGTCGTCAGTCAGTTTTCTTAAGGTTTTGTTTCTTATGACTTGTTACTGCCTTTACAAATTTGGCTTCTTTTTGTAGAAGCGCACCAAGTTTCAAAGCAAATAAACTCTCCTCCATCTACTGCA

Function

GO:

id name namespace
GO:0006620 posttranslational protein targeting to endoplasmic reticulum membrane biological_process
GO:0007416 synapse assembly biological_process
GO:0045048 protein insertion into ER membrane biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0043529 GET complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-040625-120 Predicted to enable ATP hydrolysis activity. Involved in posttranslational protein targeting to endoplasmic reticulum membrane. Acts upstream of or within synapse assembly. Predicted to be located in endoplasmic reticulum. Predicted to be part of GET complex. Orthologous to human GET3 (guided entry of tail-anchored proteins factor 3, ATPase).

Ensembl:

ensembl_id ENSDART00000007079

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003165 lncRNA upstream 272763 51850561 ~ 51864765 (+) True XLOC_000660
TCONS_00001122 lncRNA upstream 311508 51823724 ~ 51826020 (+) False XLOC_000658
TCONS_00003166 lncRNA downstream 192962 52345955 ~ 52346899 (+) True XLOC_000665
TCONS_00001133 lncRNA downstream 200169 52353162 ~ 52363107 (+) True XLOC_000666
TCONS_00003167 lncRNA downstream 210409 52363402 ~ 52368198 (+) True XLOC_000667
TCONS_00002875 lncRNA downstream 212037 52365030 ~ 52367577 (+) True XLOC_000668
TCONS_00001136 lncRNA downstream 245749 52398742 ~ 52399683 (+) True XLOC_000670
TCONS_00001127 mRNA upstream 215 52130213 ~ 52137313 (+) True XLOC_000662
TCONS_00001124 mRNA upstream 51032 51896147 ~ 52086496 (+) False XLOC_000661
TCONS_00001125 mRNA upstream 175796 51903413 ~ 51961732 (+) True XLOC_000661
TCONS_00001123 mRNA upstream 308237 51827046 ~ 51829291 (+) True XLOC_000659
TCONS_00001120 mRNA upstream 407666 51721851 ~ 51729862 (+) True XLOC_000657
TCONS_00001130 mRNA downstream 9649 52162642 ~ 52165830 (+) False XLOC_000664
TCONS_00001131 mRNA downstream 9649 52162642 ~ 52170135 (+) False XLOC_000664
TCONS_00001132 mRNA downstream 11900 52164893 ~ 52167104 (+) True XLOC_000664
TCONS_00001134 mRNA downstream 239518 52392511 ~ 52396264 (+) True XLOC_000669
TCONS_00001135 mRNA downstream 245212 52398205 ~ 52400660 (+) False XLOC_000670
TCONS_00001126 other upstream 2026 52130164 ~ 52135502 (+) False XLOC_000662
TCONS_00001119 other upstream 453910 51683519 ~ 51683618 (+) True XLOC_000655
TCONS_00001111 other upstream 671946 51465468 ~ 51465582 (+) True XLOC_000651
TCONS_00001097 other upstream 1064421 51066782 ~ 51073107 (+) False XLOC_000645
TCONS_00001084 other upstream 1283050 50854364 ~ 50854478 (+) True XLOC_000638
TCONS_00001154 other downstream 846839 52999832 ~ 53061197 (+) False XLOC_000682
TCONS_00001160 other downstream 1211517 53364510 ~ 53368034 (+) True XLOC_000689
TCONS_00001166 other downstream 1234772 53387765 ~ 53387881 (+) True XLOC_000690
TCONS_00001180 other downstream 1900111 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001186 other downstream 2033046 54186039 ~ 54186156 (+) True XLOC_000710

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000301_01733407_01741572.mRNA True 1094 mRNA 0.51 7 CI01000301 1733407 ~ 1741634 (+)
bowfin (Amia calva) AMCG00008520 True 1188 mRNA 0.60 8 CM030126.1 3116825 ~ 3121999 (-)